data_RNQ
# 
_chem_comp.id                                    RNQ 
_chem_comp.name                                  "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2,4-bis(oxidanyl)oxan-3-yl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H25 N O11" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-10-12 
_chem_comp.pdbx_modified_date                    2025-11-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        383.348 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RNQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7AN1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RNQ O3   O1  O 0 1 N N N N N N 53.005 40.629 -1.582 5.505  0.761  0.943  O3   RNQ 1  
RNQ C1   C1  C 0 1 N N S N N N 49.735 41.920 0.057  1.856  0.405  0.131  C1   RNQ 2  
RNQ O5   O2  O 0 1 N N N N N N 49.388 42.709 -1.095 1.936  -0.969 -0.251 O5   RNQ 3  
RNQ C5   C2  C 0 1 N N R N N N 50.466 43.512 -1.564 3.073  -1.286 -1.057 C5   RNQ 4  
RNQ C6   C3  C 0 1 N N N N N N 49.943 44.436 -2.656 3.039  -2.770 -1.427 C6   RNQ 5  
RNQ O6   O3  O 0 1 N N N N N N 50.961 45.380 -3.052 1.904  -3.027 -2.257 O6   RNQ 6  
RNQ C4   C4  C 0 1 N N R N N N 51.551 42.568 -2.101 4.352  -0.985 -0.272 C4   RNQ 7  
RNQ O4   O4  O 0 1 N N N N N N 51.036 41.797 -3.189 4.404  -1.812 0.892  O4   RNQ 8  
RNQ C3   C5  C 0 1 N N S N N N 52.035 41.573 -1.022 4.350  0.489  0.147  C3   RNQ 9  
RNQ C2   C6  C 0 1 N N R N N N 50.822 40.908 -0.297 3.086  0.775  0.964  C2   RNQ 10 
RNQ O2   O5  O 0 1 N N N N N N 51.199 40.209 0.878  3.038  2.163  1.298  O2   RNQ 11 
RNQ C11  C7  C 0 1 N N R N N N 45.338 42.260 2.908  -3.329 1.197  -0.130 C11  RNQ 12 
RNQ O1   O6  O 0 1 N N N N N N 44.519 42.755 3.977  -4.527 1.180  -0.909 O1   RNQ 13 
RNQ O51  O7  O 0 1 N N N N N N 46.434 41.476 3.446  -2.288 1.837  -0.870 O51  RNQ 14 
RNQ C51  C8  C 0 1 N N R N N N 47.171 40.759 2.440  -1.047 1.931  -0.168 C51  RNQ 15 
RNQ C61  C9  C 0 1 N N N N N N 48.225 39.841 3.105  -0.020 2.656  -1.042 C61  RNQ 16 
RNQ O61  O8  O 0 1 N N N N N N 47.688 39.118 4.247  -0.438 4.007  -1.245 O61  RNQ 17 
RNQ C41  C10 C 0 1 N N S N N N 47.728 41.813 1.464  -0.538 0.524  0.156  C41  RNQ 18 
RNQ O41  O9  O 0 1 N N N N N N 48.560 41.209 0.465  0.675  0.616  0.907  O41  RNQ 19 
RNQ C31  C11 C 0 1 N N R N N N 46.569 42.609 0.858  -1.597 -0.215 0.980  C31  RNQ 20 
RNQ O31  O10 O 0 1 N N N N N N 47.047 43.501 -0.142 -1.162 -1.554 1.225  O31  RNQ 21 
RNQ C21  C12 C 0 1 N N R N N N 45.858 43.378 1.980  -2.912 -0.239 0.197  C21  RNQ 22 
RNQ N2   N1  N 0 1 N N N N N N 44.775 44.273 1.554  -3.953 -0.879 1.006  N2   RNQ 23 
RNQ C7   C13 C 0 1 N N N N N N 44.927 45.545 1.135  -5.008 -1.466 0.406  C7   RNQ 24 
RNQ C8   C14 C 0 1 N N N N N N 43.654 46.344 0.960  -6.077 -2.124 1.239  C8   RNQ 25 
RNQ O7   O11 O 0 1 N N N N N N 46.023 46.054 0.930  -5.096 -1.464 -0.803 O7   RNQ 26 
RNQ HO3  H1  H 0 1 N N N N N N 53.290 40.027 -0.904 5.569  1.678  1.244  HO3  RNQ 27 
RNQ H1   H2  H 0 1 N N N N N N 50.095 42.567 0.870  1.821  1.030  -0.762 H1   RNQ 28 
RNQ H5   H3  H 0 1 N N N N N N 50.886 44.116 -0.746 3.054  -0.684 -1.965 H5   RNQ 29 
RNQ H62  H4  H 0 1 N N N N N N 49.068 44.985 -2.277 3.950  -3.031 -1.966 H62  RNQ 30 
RNQ H61  H5  H 0 1 N N N N N N 49.649 43.834 -3.529 2.969  -3.369 -0.520 H61  RNQ 31 
RNQ HO6  H6  H 0 1 N N N N N N 50.619 45.948 -3.733 1.819  -3.951 -2.531 HO6  RNQ 32 
RNQ H4   H7  H 0 1 N N N N N N 52.409 43.169 -2.435 5.221  -1.184 -0.900 H4   RNQ 33 
RNQ HO4  H8  H 0 1 N N N N N N 51.714 41.216 -3.515 5.190  -1.674 1.438  HO4  RNQ 34 
RNQ H3   H9  H 0 1 N N N N N N 52.559 42.170 -0.261 4.363  1.120  -0.741 H3   RNQ 35 
RNQ H2   H10 H 0 1 N N N N N N 50.381 40.191 -1.006 3.100  0.179  1.877  H2   RNQ 36 
RNQ HO2  H11 H 0 1 N N N N N N 50.428 39.825 1.279  2.261  2.416  1.817  HO2  RNQ 37 
RNQ H11  H12 H 0 1 N N N N N N 44.721 41.594 2.287  -3.506 1.744  0.797  H11  RNQ 38 
RNQ HO1  H13 H 0 1 N N N N N N 44.227 42.029 4.515  -4.849 2.059  -1.154 HO1  RNQ 39 
RNQ H51  H14 H 0 1 N N N N N N 46.477 40.116 1.878  -1.193 2.488  0.757  H51  RNQ 40 
RNQ H611 H15 H 0 0 N N N N N N 48.579 39.113 2.361  0.950  2.646  -0.546 H611 RNQ 41 
RNQ H621 H16 H 0 0 N N N N N N 49.069 40.460 3.444  0.058  2.151  -2.005 H621 RNQ 42 
RNQ HO61 H17 H 0 0 N N N N N N 48.367 38.569 4.623  0.167  4.528  -1.791 HO61 RNQ 43 
RNQ H41  H18 H 0 1 N N N N N N 48.337 42.515 2.052  -0.352 -0.019 -0.770 H41  RNQ 44 
RNQ H31  H19 H 0 1 N N N N N N 45.854 41.900 0.416  -1.746 0.300  1.929  H31  RNQ 45 
RNQ HO31 H20 H 0 0 N N N N N N 46.786 44.389 0.074  -1.785 -2.082 1.743  HO31 RNQ 46 
RNQ H21  H21 H 0 1 N N N N N N 46.611 43.960 2.531  -2.775 -0.798 -0.729 H21  RNQ 47 
RNQ HN2  H22 H 0 1 N N N N N N 43.844 43.907 1.577  -3.882 -0.881 1.973  HN2  RNQ 48 
RNQ H83  H23 H 0 1 N N N N N N 43.903 47.368 0.644  -6.851 -1.395 1.478  H83  RNQ 49 
RNQ H82  H24 H 0 1 N N N N N N 43.024 45.867 0.195  -6.517 -2.950 0.679  H82  RNQ 50 
RNQ H81  H25 H 0 1 N N N N N N 43.109 46.378 1.915  -5.638 -2.504 2.161  H81  RNQ 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RNQ O4  C4   SING N N 1  
RNQ O6  C6   SING N N 2  
RNQ C6  C5   SING N N 3  
RNQ C4  C5   SING N N 4  
RNQ C4  C3   SING N N 5  
RNQ O3  C3   SING N N 6  
RNQ C5  O5   SING N N 7  
RNQ O5  C1   SING N N 8  
RNQ C3  C2   SING N N 9  
RNQ C2  C1   SING N N 10 
RNQ C2  O2   SING N N 11 
RNQ O31 C31  SING N N 12 
RNQ C1  O41  SING N N 13 
RNQ O41 C41  SING N N 14 
RNQ C31 C41  SING N N 15 
RNQ C31 C21  SING N N 16 
RNQ O7  C7   DOUB N N 17 
RNQ C8  C7   SING N N 18 
RNQ C7  N2   SING N N 19 
RNQ C41 C51  SING N N 20 
RNQ N2  C21  SING N N 21 
RNQ C21 C11  SING N N 22 
RNQ C51 C61  SING N N 23 
RNQ C51 O51  SING N N 24 
RNQ C11 O51  SING N N 25 
RNQ C11 O1   SING N N 26 
RNQ C61 O61  SING N N 27 
RNQ O3  HO3  SING N N 28 
RNQ C1  H1   SING N N 29 
RNQ C5  H5   SING N N 30 
RNQ C6  H62  SING N N 31 
RNQ C6  H61  SING N N 32 
RNQ O6  HO6  SING N N 33 
RNQ C4  H4   SING N N 34 
RNQ O4  HO4  SING N N 35 
RNQ C3  H3   SING N N 36 
RNQ C2  H2   SING N N 37 
RNQ O2  HO2  SING N N 38 
RNQ C11 H11  SING N N 39 
RNQ O1  HO1  SING N N 40 
RNQ C51 H51  SING N N 41 
RNQ C61 H611 SING N N 42 
RNQ C61 H621 SING N N 43 
RNQ O61 HO61 SING N N 44 
RNQ C41 H41  SING N N 45 
RNQ C31 H31  SING N N 46 
RNQ O31 HO31 SING N N 47 
RNQ C21 H21  SING N N 48 
RNQ N2  HN2  SING N N 49 
RNQ C8  H83  SING N N 50 
RNQ C8  H82  SING N N 51 
RNQ C8  H81  SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RNQ InChI            InChI                1.03  "InChI=1S/C14H25NO11/c1-4(18)15-7-9(20)12(6(3-17)24-13(7)23)26-14-11(22)10(21)8(19)5(2-16)25-14/h5-14,16-17,19-23H,2-3H2,1H3,(H,15,18)/t5-,6-,7-,8+,9-,10+,11-,12-,13-,14+/m1/s1" 
RNQ InChIKey         InChI                1.03  KFEUJDWYNGMDBV-LODBTCKLSA-N                                                                                                                                                       
RNQ SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H]1O"                                                                                        
RNQ SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH]1O"                                                                                                     
RNQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O"                                                                                      
RNQ SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1O)CO)OC2C(C(C(C(O2)CO)O)O)O)O"                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           RNQ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2,4-bis(oxidanyl)oxan-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RNQ "Create component" 2020-10-12 PDBE 
RNQ "Initial release"  2025-11-12 RCSB 
# 
