data_XYQ
#

_chem_comp.id                                   XYQ
_chem_comp.name                                 "(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL ACETATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H25 N5 O15 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ACETYL-RIBOSYL-ADP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-07-13
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       601.352
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XYQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XYQ  O5    O5    O  0  1  N  N  N   -0.359  39.124   84.350  -7.889   1.042  -3.134  O5    XYQ   1  
XYQ  CH    CH    C  0  1  N  N  N   -0.456  39.139   85.683  -8.361   1.931  -2.464  CH    XYQ   2  
XYQ  CH3   CH3   C  0  1  N  N  N    0.730  39.155   86.487  -8.775   3.226  -3.115  CH3   XYQ   3  
XYQ  OH    OH    O  0  1  N  N  N   -1.698  39.087   86.328  -8.516   1.764  -1.142  OH    XYQ   4  
XYQ  C1N   C1N   C  0  1  N  N  R   -1.665  38.933   87.761  -8.118   0.517  -0.515  C1N   XYQ   5  
XYQ  C2N   C2N   C  0  1  N  N  R   -1.907  37.439   87.981  -8.619   0.480   0.945  C2N   XYQ   6  
XYQ  C3N   C3N   C  0  1  N  N  S   -3.392  37.345   88.015  -7.425  -0.186   1.685  C3N   XYQ   7  
XYQ  O3N   O3N   O  0  1  N  N  N   -3.869  36.983   86.685  -7.363   0.237   3.049  O3N   XYQ   8  
XYQ  O2N   O2N   O  0  1  N  N  N   -1.223  36.535   87.161  -8.852   1.800   1.439  O2N   XYQ   9  
XYQ  O4N   O4N   O  0  1  N  N  N   -2.827  39.638   88.009  -6.689   0.422  -0.486  O4N   XYQ  10  
XYQ  C4N   C4N   C  0  1  N  N  R   -3.903  38.715   88.222  -6.228   0.370   0.873  C4N   XYQ  11  
XYQ  C5N   C5N   C  0  1  N  N  N   -4.349  38.784   89.699  -5.024  -0.568   0.990  C5N   XYQ  12  
XYQ  O5N   O5N   O  0  1  N  N  N   -5.606  38.139   89.849  -3.917  -0.012   0.277  O5N   XYQ  13  
XYQ  PN    PN    P  0  1  N  N  R   -5.873  37.012   90.997  -2.693  -1.045   0.442  PN    XYQ  14  
XYQ  ON2   ON2   O  0  1  N  N  N   -4.740  36.078   91.073  -3.059  -2.432  -0.289  ON2   XYQ  15  
XYQ  ON1   ON1   O  0  1  N  N  N   -7.255  36.600   90.834  -2.447  -1.294   1.880  ON1   XYQ  16  
XYQ  ON3   ON3   O  0  1  N  N  N   -5.681  37.923   92.320  -1.369  -0.419  -0.228  ON3   XYQ  17  
XYQ  PA    PA    P  0  1  N  N  R   -6.798  38.912   92.951  -0.122  -1.286   0.307  PA    XYQ  18  
XYQ  OA2   OA2   O  0  1  N  N  N   -6.003  39.618   93.994   0.193  -0.887   1.834  OA2   XYQ  19  
XYQ  O5A   O5A   O  0  1  N  N  N   -7.927  37.989   93.523   1.170  -0.986  -0.605  O5A   XYQ  20  
XYQ  C5A   C5A   C  0  1  N  N  N   -7.730  37.201   94.708   2.204  -1.866  -0.159  C5A   XYQ  21  
XYQ  C4A   C4A   C  0  1  N  N  R   -9.048  36.584   95.072   3.468  -1.631  -0.988  C4A   XYQ  22  
XYQ  O4A   O4A   O  0  1  N  N  N   -8.893  35.536   96.052   3.994  -0.321  -0.716  O4A   XYQ  23  
XYQ  C1A   C1A   C  0  1  N  N  R   -9.618  35.894   97.258   5.432  -0.419  -0.801  C1A   XYQ  24  
XYQ  N9    N9    N  0  1  Y  N  N   -8.875  35.334   98.387   6.068   0.680  -0.070  N9    XYQ  25  
XYQ  C8    C8    C  0  1  Y  N  N   -7.735  35.780   98.970   5.516   1.397   0.949  C8    XYQ  26  
XYQ  N7    N7    N  0  1  Y  N  N   -7.350  34.875   99.932   6.359   2.296   1.368  N7    XYQ  27  
XYQ  C5    C5    C  0  1  Y  N  N   -8.245  33.889   99.883   7.502   2.214   0.645  C5    XYQ  28  
XYQ  C4    C4    C  0  1  Y  N  N   -9.130  34.152   98.899   7.331   1.172  -0.283  C4    XYQ  29  
XYQ  N3    N3    N  0  1  Y  N  N  -10.227  33.291   98.602   8.319   0.890  -1.125  N3    XYQ  30  
XYQ  C2    C2    C  0  1  Y  N  N  -10.320  32.122   99.275   9.448   1.567  -1.088  C2    XYQ  31  
XYQ  N1    N1    N  0  1  Y  N  N   -9.374  31.868  100.211   9.656   2.550  -0.231  N1    XYQ  32  
XYQ  C6    C6    C  0  1  Y  N  N   -8.382  32.698  100.519   8.724   2.908   0.646  C6    XYQ  33  
XYQ  N6    N6    N  0  1  N  N  N   -7.391  32.465  101.428   8.952   3.939   1.541  N6    XYQ  34  
XYQ  C2A   C2A   C  0  1  N  N  R  -10.053  37.374   97.173   5.743  -1.780  -0.127  C2A   XYQ  35  
XYQ  C3A   C3A   C  0  1  N  N  S   -9.898  37.678   95.682   4.551  -2.654  -0.595  C3A   XYQ  36  
XYQ  O3A   O3A   O  0  1  N  N  N  -11.187  37.406   95.070   4.927  -3.451  -1.720  O3A   XYQ  37  
XYQ  O2A   O2A   O  0  1  N  N  N  -11.319  37.542   97.718   6.982  -2.312  -0.600  O2A   XYQ  38  
XYQ  OA1   OA1   O  0  1  N  N  N   -7.472  39.767   91.881  -0.455  -2.726   0.231  OA1   XYQ  39  
XYQ  HH31  1HH3  H  0  0  N  N  N    0.751  38.261   87.127  -8.574   3.175  -4.185  HH31  XYQ  40  
XYQ  HH32  2HH3  H  0  0  N  N  N    0.734  40.057   87.116  -9.840   3.390  -2.952  HH32  XYQ  41  
XYQ  HH33  3HH3  H  0  0  N  N  N    1.616  39.159   85.835  -8.210   4.049  -2.678  HH33  XYQ  42  
XYQ  H1N   H1N   H  0  1  N  N  N   -0.783  39.244   88.340  -8.532  -0.325  -1.070  H1N   XYQ  43  
XYQ  H2N   H2N   H  0  1  N  N  N   -1.444  37.086   88.914  -9.518  -0.130   1.033  H2N   XYQ  44  
XYQ  H3N   H3N   H  0  1  N  N  N   -3.707  36.625   88.785  -7.477  -1.272   1.615  H3N   XYQ  45  
XYQ  HO3N  HO3N  H  0  0  N  N  N   -4.816  36.904   86.698  -8.133  -0.142   3.494  HO3N  XYQ  46  
XYQ  HO2N  HO2N  H  0  0  N  N  N   -1.068  36.932   86.312  -9.601   2.157   0.942  HO2N  XYQ  47  
XYQ  H4N   H4N   H  0  1  N  N  N   -4.730  38.960   87.539  -5.964   1.368   1.222  H4N   XYQ  48  
XYQ  H5N1  1H5N  H  0  0  N  N  N   -4.440  39.837   90.004  -4.757  -0.688   2.040  H5N1  XYQ  49  
XYQ  H5N2  2H5N  H  0  0  N  N  N   -3.602  38.281   90.330  -5.278  -1.540   0.566  H5N2  XYQ  50  
XYQ  HON2  HON2  H  0  0  N  N  N   -4.436  35.877   90.196  -3.211  -2.226  -1.221  HON2  XYQ  51  
XYQ  HOA2  HOA2  H  0  0  N  N  N   -5.122  39.768   93.673   0.404   0.056   1.839  HOA2  XYQ  52  
XYQ  H5A1  1H5A  H  0  0  N  N  N   -7.361  37.831   95.531   2.418  -1.672   0.893  H5A1  XYQ  53  
XYQ  H5A2  2H5A  H  0  0  N  N  N   -6.985  36.414   94.518   1.878  -2.899  -0.279  H5A2  XYQ  54  
XYQ  H4A   H4A   H  0  1  N  N  N   -9.503  36.146   94.171   3.237  -1.724  -2.049  H4A   XYQ  55  
XYQ  H1A   H1A   H  0  1  N  N  N  -10.610  35.445   97.414   5.755  -0.424  -1.842  H1A   XYQ  56  
XYQ  H8    H8    H  0  1  N  N  N   -7.216  36.694   98.721   4.526   1.241   1.351  H8    XYQ  57  
XYQ  H2    H2    H  0  1  N  N  N  -11.116  31.420   99.075  10.232   1.309  -1.784  H2    XYQ  58  
XYQ  HN61  1HN6  H  0  0  N  N  N   -7.365  33.213  102.092   8.263   4.190   2.176  HN61  XYQ  59  
XYQ  HN62  2HN6  H  0  0  N  N  N   -6.511  32.408  100.956   9.799   4.410   1.532  HN62  XYQ  60  
XYQ  H2A   H2A   H  0  1  N  N  N   -9.461  38.089   97.763   5.753  -1.682   0.959  H2A   XYQ  61  
XYQ  H3A   H3A   H  0  1  N  N  N   -9.506  38.696   95.544   4.199  -3.288   0.219  H3A   XYQ  62  
XYQ  HO3A  HO3A  H  0  0  N  N  N  -11.852  37.347   95.745   5.646  -4.027  -1.427  HO3A  XYQ  63  
XYQ  HO2A  HO2A  H  0  0  N  N  N  -11.254  37.580   98.665   7.116  -3.154  -0.144  HO2A  XYQ  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XYQ  O5   CH    DOUB  N  N   1  
XYQ  CH   CH3   SING  N  N   2  
XYQ  CH   OH    SING  N  N   3  
XYQ  CH3  HH31  SING  N  N   4  
XYQ  CH3  HH32  SING  N  N   5  
XYQ  CH3  HH33  SING  N  N   6  
XYQ  OH   C1N   SING  N  N   7  
XYQ  C1N  C2N   SING  N  N   8  
XYQ  C1N  O4N   SING  N  N   9  
XYQ  C1N  H1N   SING  N  N  10  
XYQ  C2N  C3N   SING  N  N  11  
XYQ  C2N  O2N   SING  N  N  12  
XYQ  C2N  H2N   SING  N  N  13  
XYQ  C3N  O3N   SING  N  N  14  
XYQ  C3N  C4N   SING  N  N  15  
XYQ  C3N  H3N   SING  N  N  16  
XYQ  O3N  HO3N  SING  N  N  17  
XYQ  O2N  HO2N  SING  N  N  18  
XYQ  O4N  C4N   SING  N  N  19  
XYQ  C4N  C5N   SING  N  N  20  
XYQ  C4N  H4N   SING  N  N  21  
XYQ  C5N  O5N   SING  N  N  22  
XYQ  C5N  H5N1  SING  N  N  23  
XYQ  C5N  H5N2  SING  N  N  24  
XYQ  O5N  PN    SING  N  N  25  
XYQ  PN   ON2   SING  N  N  26  
XYQ  PN   ON1   DOUB  N  N  27  
XYQ  PN   ON3   SING  N  N  28  
XYQ  ON2  HON2  SING  N  N  29  
XYQ  ON3  PA    SING  N  N  30  
XYQ  PA   OA2   SING  N  N  31  
XYQ  PA   O5A   SING  N  N  32  
XYQ  PA   OA1   DOUB  N  N  33  
XYQ  OA2  HOA2  SING  N  N  34  
XYQ  O5A  C5A   SING  N  N  35  
XYQ  C5A  C4A   SING  N  N  36  
XYQ  C5A  H5A1  SING  N  N  37  
XYQ  C5A  H5A2  SING  N  N  38  
XYQ  C4A  O4A   SING  N  N  39  
XYQ  C4A  C3A   SING  N  N  40  
XYQ  C4A  H4A   SING  N  N  41  
XYQ  O4A  C1A   SING  N  N  42  
XYQ  C1A  N9    SING  N  N  43  
XYQ  C1A  C2A   SING  N  N  44  
XYQ  C1A  H1A   SING  N  N  45  
XYQ  N9   C8    SING  Y  N  46  
XYQ  N9   C4    SING  Y  N  47  
XYQ  C8   N7    DOUB  Y  N  48  
XYQ  C8   H8    SING  N  N  49  
XYQ  N7   C5    SING  Y  N  50  
XYQ  C5   C4    SING  Y  N  51  
XYQ  C5   C6    DOUB  Y  N  52  
XYQ  C4   N3    DOUB  Y  N  53  
XYQ  N3   C2    SING  Y  N  54  
XYQ  C2   N1    DOUB  Y  N  55  
XYQ  C2   H2    SING  N  N  56  
XYQ  N1   C6    SING  Y  N  57  
XYQ  C6   N6    SING  N  N  58  
XYQ  N6   HN61  SING  N  N  59  
XYQ  N6   HN62  SING  N  N  60  
XYQ  C2A  C3A   SING  N  N  61  
XYQ  C2A  O2A   SING  N  N  62  
XYQ  C2A  H2A   SING  N  N  63  
XYQ  C3A  O3A   SING  N  N  64  
XYQ  C3A  H3A   SING  N  N  65  
XYQ  O3A  HO3A  SING  N  N  66  
XYQ  O2A  HO2A  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XYQ  SMILES            ACDLabs               10.04  "O=C(OC1OC(C(O)C1O)COP(=O)(O)OP(=O)(O)OCC4OC(n2c3ncnc(N)c3nc2)C(O)C4O)C"  
XYQ  SMILES_CANONICAL  CACTVS                3.341  "CC(=O)O[C@H]1O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@@H](O)[C@H]1O"  
XYQ  SMILES            CACTVS                3.341  "CC(=O)O[CH]1O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH](O)[CH]1O"  
XYQ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(=O)O[C@@H]1[C@@H]([C@@H]([C@H](O1)CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O)O"  
XYQ  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(=O)OC1C(C(C(O1)COP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O)O"  
XYQ  InChI             InChI                 1.03   "InChI=1S/C17H25N5O15P2/c1-6(23)34-17-13(27)11(25)8(36-17)3-33-39(30,31)37-38(28,29)32-2-7-10(24)12(26)16(35-7)22-5-21-9-14(18)19-4-20-15(9)22/h4-5,7-8,10-13,16-17,24-27H,2-3H2,1H3,(H,28,29)(H,30,31)(H2,18,19,20)/t7-,8-,10-,11-,12-,13-,16-,17+/m1/s1"  
XYQ  InChIKey          InChI                 1.03   IJOUKWCBVUMMCR-DLFWLGJNSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XYQ  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxytetrahydrofuran-2-yl acetate (non-preferred name)"  
XYQ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3R,4S,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxymethyl]-3,4-dihydroxy-oxolan-2-yl] ethanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XYQ  "Create component"   2006-07-13  RCSB  
XYQ  "Modify descriptor"  2011-06-04  RCSB  
XYQ  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     XYQ
_pdbx_chem_comp_synonyms.name        ACETYL-RIBOSYL-ADP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
