data_JIT
# 
_chem_comp.id                                    JIT 
_chem_comp.name                                  "beta-D-manno-configured cyclophellitol aziridine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H13 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-28 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        175.182 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JIT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7OP6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JIT C1  C1  C 0 1 N N R -20.067 58.011 49.208 1.314  -1.514 0.588  C1  JIT 1  
JIT C2  C2  C 0 1 N N R -19.495 57.227 47.999 1.939  -0.155 0.309  C2  JIT 2  
JIT C3  C3  C 0 1 N N S -19.890 57.836 46.631 0.969  0.983  0.549  C3  JIT 3  
JIT C4  C4  C 0 1 N N R -19.841 59.385 46.646 -0.390 0.736  -0.068 C4  JIT 4  
JIT C5  C5  C 0 1 N N R -19.165 59.891 47.943 -1.096 -0.465 0.524  C5  JIT 5  
JIT C6  C6  C 0 1 N N N -18.702 61.347 47.993 -2.299 -0.814 -0.354 C6  JIT 6  
JIT C7  C7  C 0 1 N N R -20.048 59.538 49.138 -0.196 -1.684 0.602  C7  JIT 7  
JIT N8  N1  N 0 1 N N N -21.324 58.774 48.999 0.574  -2.132 -0.530 N8  JIT 8  
JIT O2  O1  O 0 1 N N N -19.896 55.868 48.122 2.373  -0.115 -1.051 O2  JIT 9  
JIT O3  O2  O 0 1 N N N -21.196 57.394 46.199 1.517  2.180  -0.006 O3  JIT 10 
JIT O4  O3  O 0 1 N N N -19.163 59.862 45.465 -1.204 1.894  0.133  O4  JIT 11 
JIT O6  O4  O 0 1 N N N -19.721 62.246 48.447 -3.249 0.253  -0.307 O6  JIT 12 
JIT H1  H1  H 0 1 N N N -19.906 57.561 50.199 1.898  -2.176 1.227  H1  JIT 13 
JIT H2  H2  H 0 1 N N N -18.399 57.278 48.071 2.804  -0.023 0.960  H2  JIT 14 
JIT H3  H3  H 0 1 N N N -19.146 57.495 45.896 0.848  1.120  1.624  H3  JIT 15 
JIT H4  H4  H 0 1 N N N -20.877 59.754 46.641 -0.266 0.579  -1.139 H4  JIT 16 
JIT H5  H5  H 0 1 N N N -18.254 59.285 48.056 -1.452 -0.208 1.522  H5  JIT 17 
JIT H6  H6  H 0 1 N N N -17.843 61.418 48.676 -1.968 -0.960 -1.383 H6  JIT 18 
JIT H7  H7  H 0 1 N N N -18.392 61.651 46.982 -2.763 -1.730 0.011  H7  JIT 19 
JIT H8  H8  H 0 1 N N N -19.872 60.085 50.076 -0.565 -2.481 1.248  H8  JIT 20 
JIT H9  H9  H 0 1 N N N -22.007 58.813 49.728 0.673  -3.136 -0.526 H9  JIT 21 
JIT H11 H11 H 0 1 N N N -19.635 55.536 48.973 2.784  0.722  -1.309 H11 JIT 22 
JIT H12 H12 H 0 1 N N N -21.223 56.444 46.191 0.979  2.968  0.150  H12 JIT 23 
JIT H13 H13 H 0 1 N N N -19.135 60.811 45.477 -0.846 2.700  -0.263 H13 JIT 24 
JIT H14 H14 H 0 1 N N N -19.380 63.133 48.458 -4.039 0.100  -0.842 H14 JIT 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JIT O4 C4  SING N N 1  
JIT O3 C3  SING N N 2  
JIT C3 C4  SING N N 3  
JIT C3 C2  SING N N 4  
JIT C4 C5  SING N N 5  
JIT C5 C6  SING N N 6  
JIT C5 C7  SING N N 7  
JIT C6 O6  SING N N 8  
JIT C2 O2  SING N N 9  
JIT C2 C1  SING N N 10 
JIT N8 C7  SING N N 11 
JIT N8 C1  SING N N 12 
JIT C7 C1  SING N N 13 
JIT C1 H1  SING N N 14 
JIT C2 H2  SING N N 15 
JIT C3 H3  SING N N 16 
JIT C4 H4  SING N N 17 
JIT C5 H5  SING N N 18 
JIT C6 H6  SING N N 19 
JIT C6 H7  SING N N 20 
JIT C7 H8  SING N N 21 
JIT N8 H9  SING N N 22 
JIT O2 H11 SING N N 23 
JIT O3 H12 SING N N 24 
JIT O4 H13 SING N N 25 
JIT O6 H14 SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JIT InChI            InChI                1.06  "InChI=1S/C7H13NO4/c9-1-2-3-4(8-3)6(11)7(12)5(2)10/h2-12H,1H2/t2-,3+,4+,5+,6+,7-/m0/s1" 
JIT InChIKey         InChI                1.06  GPIFFOGPRPKRHS-IVZITJRKSA-N                                                             
JIT SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@H](O)[C@@H]2N[C@H]12"                                     
JIT SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]2N[CH]12"                                              
JIT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@@H]2[C@@H](N2)[C@H]([C@H]([C@@H]1O)O)O)O"                                   
JIT SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C2C(N2)C(C(C1O)O)O)O"                                                              
# 
_pdbx_chem_comp_identifier.comp_id           JIT 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{R},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JIT "Create component"  2022-04-28 PDBE 
JIT "Initial release"   2022-05-18 RCSB 
JIT "Modify descriptor" 2022-08-22 RCSB 
# 
