data_XRW
# 
_chem_comp.id                                    XRW 
_chem_comp.name                                  "N~6~-[(2S)-2-hydroxypropanoyl]-L-lysine" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H18 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-06 
_chem_comp.pdbx_modified_date                    2025-04-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        218.250 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XRW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8HLY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XRW C    C1  C 0 1 N N N Y N Y -13.996 -24.842 10.786 -4.959 0.335  0.113  C    XRW 1  
XRW CB   C2  C 0 1 N N N N N N -12.124 -23.255 10.539 -2.480 0.345  0.034  CB   XRW 2  
XRW CA   C3  C 0 1 N N S Y N N -12.504 -24.736 10.550 -3.728 -0.534 0.141  CA   XRW 3  
XRW N    N1  N 0 1 N N N Y Y N -12.191 -25.359 9.283  -3.765 -1.472 -0.990 N    XRW 4  
XRW O    O1  O 0 1 N N N Y N Y -14.743 -24.402 9.983  -5.592 0.453  -0.909 O    XRW 5  
XRW CE   C4  C 0 1 N N N N N N -11.120 -20.758 12.852 1.268  -0.514 0.233  CE   XRW 6  
XRW C22  C5  C 0 1 N N N N N N -11.275 -18.491 14.034 3.687  -0.226 0.236  C22  XRW 7  
XRW C24  C6  C 0 1 N N S N N N -11.007 -16.988 14.011 4.917  0.640  0.130  C24  XRW 8  
XRW CG   C7  C 0 1 N N N N N N -12.473 -22.599 11.881 -1.230 -0.524 0.187  CG   XRW 9  
XRW CD   C8  C 0 1 N N N N N N -12.204 -21.096 11.838 0.018  0.354  0.080  CD   XRW 10 
XRW C25  C9  C 0 1 N N N N N N -9.505  -16.725 13.934 4.939  1.330  -1.235 C25  XRW 11 
XRW NZ   N2  N 0 1 N N N N N N -10.927 -19.322 12.899 2.463  0.327  0.130  NZ   XRW 12 
XRW O23  O2  O 0 1 N N N N N N -11.790 -18.985 14.982 3.800  -1.420 0.416  O23  XRW 13 
XRW O26  O3  O 0 1 N N N N N N -11.515 -16.422 15.191 6.084  -0.171 0.274  O26  XRW 14 
XRW OXT  O4  O 0 1 N Y N Y N Y -14.477 -25.479 11.993 -5.354 0.974  1.225  OXT  XRW 15 
XRW HB3  H1  H 0 1 N N N N N N -11.043 -23.160 10.361 -2.464 0.836  -0.939 HB3  XRW 16 
XRW HB2  H2  H 0 1 N N N N N N -12.674 -22.746 9.734  -2.498 1.098  0.821  HB2  XRW 17 
XRW HA   H3  H 0 1 N N N Y N N -11.968 -25.241 11.367 -3.699 -1.094 1.076  HA   XRW 18 
XRW H    H4  H 0 1 N N N Y Y N -12.448 -26.325 9.314  -4.545 -2.106 -0.908 H    XRW 19 
XRW H2   H5  H 0 1 N Y N Y Y N -12.699 -24.902 8.553  -3.792 -0.977 -1.869 H2   XRW 20 
XRW HE2  H7  H 0 1 N N N N N N -11.423 -21.119 13.846 1.252  -1.005 1.206  HE2  XRW 21 
XRW HE3  H8  H 0 1 N N N N N N -10.178 -21.244 12.557 1.286  -1.268 -0.554 HE3  XRW 22 
XRW H241 H9  H 0 0 N N N N N N -11.494 -16.550 13.127 4.899  1.393  0.918  H241 XRW 23 
XRW HG2  H10 H 0 1 N N N N N N -13.538 -22.768 12.099 -1.246 -1.015 1.160  HG2  XRW 24 
XRW HG3  H11 H 0 1 N N N N N N -11.860 -23.052 12.674 -1.212 -1.278 -0.601 HG3  XRW 25 
XRW HD2  H12 H 0 1 N N N N N N -11.869 -20.810 10.830 0.000  1.108  0.867  HD2  XRW 26 
XRW HD3  H13 H 0 1 N N N N N N -13.125 -20.549 12.087 0.034  0.846  -0.893 HD3  XRW 27 
XRW H252 H14 H 0 0 N N N N N N -9.322  -15.640 13.918 4.957  0.576  -2.023 H252 XRW 28 
XRW H253 H15 H 0 0 N N N N N N -9.010  -17.167 14.811 4.048  1.948  -1.344 H253 XRW 29 
XRW H251 H16 H 0 0 N N N N N N -9.100  -17.178 13.017 5.828  1.956  -1.311 H251 XRW 30 
XRW HZ2  H17 H 0 1 N N N N N N -10.528 -18.877 12.097 2.373  1.282  -0.014 HZ2  XRW 31 
XRW H261 H18 H 0 0 N N N N N N -11.889 -17.105 15.735 6.915  0.321  0.216  H261 XRW 32 
XRW HXT  H19 H 0 1 N Y N Y N Y -15.427 -25.468 12.000 -6.149 1.520  1.158  HXT  XRW 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XRW N   CA   SING N N 1  
XRW O   C    DOUB N N 2  
XRW CB  CA   SING N N 3  
XRW CB  CG   SING N N 4  
XRW CA  C    SING N N 5  
XRW CD  CG   SING N N 6  
XRW CD  CE   SING N N 7  
XRW CE  NZ   SING N N 8  
XRW NZ  C22  SING N N 9  
XRW C25 C24  SING N N 10 
XRW C24 C22  SING N N 11 
XRW C24 O26  SING N N 12 
XRW C22 O23  DOUB N N 13 
XRW C   OXT  SING N N 14 
XRW CB  HB3  SING N N 15 
XRW CB  HB2  SING N N 16 
XRW CA  HA   SING N N 17 
XRW N   H    SING N N 18 
XRW N   H2   SING N N 19 
XRW CE  HE2  SING N N 20 
XRW CE  HE3  SING N N 21 
XRW C24 H241 SING N N 22 
XRW CG  HG2  SING N N 23 
XRW CG  HG3  SING N N 24 
XRW CD  HD2  SING N N 25 
XRW CD  HD3  SING N N 26 
XRW C25 H252 SING N N 27 
XRW C25 H253 SING N N 28 
XRW C25 H251 SING N N 29 
XRW NZ  HZ2  SING N N 30 
XRW O26 H261 SING N N 31 
XRW OXT HXT  SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XRW SMILES           ACDLabs              12.01 "O=C(NCCCCC(N)C(=O)O)C(C)O"                                                                                     
XRW InChI            InChI                1.06  "InChI=1S/C9H18N2O4/c1-6(12)8(13)11-5-3-2-4-7(10)9(14)15/h6-7,12H,2-5,10H2,1H3,(H,11,13)(H,14,15)/t6-,7-/m0/s1" 
XRW InChIKey         InChI                1.06  TVFTZQHBUQYHFH-BQBZGAKWSA-N                                                                                     
XRW SMILES_CANONICAL CACTVS               3.385 "C[C@H](O)C(=O)NCCCC[C@H](N)C(O)=O"                                                                             
XRW SMILES           CACTVS               3.385 "C[CH](O)C(=O)NCCCC[CH](N)C(O)=O"                                                                               
XRW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)NCCCC[C@@H](C(=O)O)N)O"                                                                           
XRW SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)NCCCCC(C(=O)O)N)O"                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XRW "SYSTEMATIC NAME" ACDLabs              12.01 "N~6~-[(2S)-2-hydroxypropanoyl]-L-lysine"                              
XRW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyl-6-[[(2~{S})-2-oxidanylpropanoyl]amino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XRW "Create component" 2022-12-06 RCSB 
XRW "Modify backbone"  2024-09-25 PDBE 
XRW "Modify PCM"       2024-09-27 PDBE 
XRW "Initial release"  2025-04-23 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XRW 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               Lactoylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      PTM-0682 
# 
