data_A1CDX
# 
_chem_comp.id                                    A1CDX 
_chem_comp.name                                  "2-[(1S)-2,2-difluorocyclopentyl]ethan-1-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H13 F2 N" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2025-05-21 
_chem_comp.pdbx_modified_date                    2025-10-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        149.182 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1CDX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7IAX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1CDX N1  N1  N 0 1 N N N N N N 8.215  -24.091 1.013  3.787  -0.222 0.225  N1  A1CDX 1  
A1CDX C4  C1  C 0 1 N N S N N N 10.839 -21.665 0.214  0.087  0.237  -0.476 C4  A1CDX 2  
A1CDX C5  C2  C 0 1 N N N N N N 11.515 -21.718 -1.164 -0.108 1.695  -0.012 C5  A1CDX 3  
A1CDX C6  C3  C 0 1 N N N N N N 12.972 -21.543 -0.886 -1.643 1.845  0.135  C6  A1CDX 4  
A1CDX C7  C4  C 0 1 N N N N N N 12.978 -20.506 0.230  -2.066 0.471  0.713  C7  A1CDX 5  
A1CDX C8  C5  C 0 1 N N N N N N 11.817 -20.898 1.093  -1.158 -0.541 -0.015 C8  A1CDX 6  
A1CDX C2  C6  C 0 1 N N N N N N 9.231  -23.593 0.060  2.581  0.346  -0.394 C2  A1CDX 7  
A1CDX C3  C7  C 0 1 N N N N N N 10.416 -23.030 0.754  1.342  -0.354 0.168  C3  A1CDX 8  
A1CDX F10 F1  F 0 1 N N N N N N 12.217 -21.546 2.232  -0.786 -1.567 0.860  F10 A1CDX 9  
A1CDX F9  F2  F 0 1 N N N N N N 11.147 -19.808 1.538  -1.827 -1.075 -1.122 F9  A1CDX 10 
A1CDX H1C H1  H 0 1 N N N N N N 7.436  -24.461 0.507  3.827  -1.221 0.089  H1C A1CDX 11 
A1CDX H1A H2  H 0 1 N N N N N N 8.615  -24.810 1.581  4.620  0.225  -0.130 H1A A1CDX 12 
A1CDX H4  H4  H 0 1 N N N N N N 9.931  -21.052 0.113  0.170  0.198  -1.562 H4  A1CDX 13 
A1CDX H5B H5  H 0 1 N N N N N N 11.144 -20.907 -1.808 0.385  1.860  0.946  H5B A1CDX 14 
A1CDX H5A H6  H 0 1 N N N N N N 11.328 -22.687 -1.650 0.272  2.388  -0.762 H5A A1CDX 15 
A1CDX H6A H7  H 0 1 N N N N N N 13.428 -22.487 -0.553 -1.888 2.648  0.830  H6A A1CDX 16 
A1CDX H6B H8  H 0 1 N N N N N N 13.504 -21.172 -1.775 -2.109 2.016  -0.835 H6B A1CDX 17 
A1CDX H7A H9  H 0 1 N N N N N N 13.919 -20.548 0.798  -1.890 0.438  1.788  H7A A1CDX 18 
A1CDX H7B H10 H 0 1 N N N N N N 12.839 -19.493 -0.176 -3.115 0.271  0.491  H7B A1CDX 19 
A1CDX H2B H11 H 0 1 N N N N N N 8.778  -22.808 -0.563 2.527  1.412  -0.173 H2B A1CDX 20 
A1CDX H2A H12 H 0 1 N N N N N N 9.557  -24.427 -0.579 2.623  0.200  -1.473 H2A A1CDX 21 
A1CDX H3A H13 H 0 1 N N N N N N 10.178 -22.924 1.823  1.300  -0.209 1.247  H3A A1CDX 22 
A1CDX H3B H14 H 0 1 N N N N N N 11.257 -23.729 0.633  1.396  -1.421 -0.053 H3B A1CDX 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1CDX C5 C6  SING N N 1  
A1CDX C5 C4  SING N N 2  
A1CDX C6 C7  SING N N 3  
A1CDX C2 C3  SING N N 4  
A1CDX C2 N1  SING N N 5  
A1CDX C4 C3  SING N N 6  
A1CDX C4 C8  SING N N 7  
A1CDX C7 C8  SING N N 8  
A1CDX C8 F9  SING N N 9  
A1CDX C8 F10 SING N N 10 
A1CDX N1 H1C SING N N 11 
A1CDX N1 H1A SING N N 12 
A1CDX C4 H4  SING N N 13 
A1CDX C5 H5B SING N N 14 
A1CDX C5 H5A SING N N 15 
A1CDX C6 H6A SING N N 16 
A1CDX C6 H6B SING N N 17 
A1CDX C7 H7A SING N N 18 
A1CDX C7 H7B SING N N 19 
A1CDX C2 H2B SING N N 20 
A1CDX C2 H2A SING N N 21 
A1CDX C3 H3A SING N N 22 
A1CDX C3 H3B SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1CDX SMILES           ACDLabs              14.52   "FC1(F)CCCC1CCN"                                                   
A1CDX InChI            InChI                1.06    "InChI=1S/C7H13F2N/c8-7(9)4-1-2-6(7)3-5-10/h6H,1-5,10H2/t6-/m0/s1" 
A1CDX InChIKey         InChI                1.06    OUORFBWHYHZQIN-LURJTMIESA-N                                        
A1CDX SMILES_CANONICAL CACTVS               3.385   "NCC[C@@H]1CCCC1(F)F"                                              
A1CDX SMILES           CACTVS               3.385   "NCC[CH]1CCCC1(F)F"                                                
A1CDX SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C1C[C@H](C(C1)(F)F)CCN"                                           
A1CDX SMILES           "OpenEye OEToolkits" 3.1.0.0 "C1CC(C(C1)(F)F)CCN"                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1CDX "SYSTEMATIC NAME" ACDLabs              14.52   "2-[(1S)-2,2-difluorocyclopentyl]ethan-1-amine"       
A1CDX "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[(1~{S})-2,2-bis(fluoranyl)cyclopentyl]ethanamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1CDX "Create component" 2025-05-21 RCSB 
A1CDX "Initial release"  2025-11-05 RCSB 
# 
