data_A1CEZ
# 
_chem_comp.id                                    A1CEZ 
_chem_comp.name                                  "N-[2-chloro-4-(trifluoromethyl)phenyl]-2-[(9R)-1'-(5-hydroxy-6-methylpyrimidine-4-carbonyl)-2-(morpholin-4-yl)-8-oxo-5,8-dihydrospiro[cyclopenta[d][1,2,4]triazolo[1,5-a]pyrimidine-7,4'-piperidin]-4(6H)-yl]acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H31 Cl F3 N9 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2025-06-03 
_chem_comp.pdbx_modified_date                    2025-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        702.083 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1CEZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9OWD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1CEZ C1  C1  C  0 1 N N N N N N -12.149 -17.387 -30.058 10.864 1.258  -1.485 C1  A1CEZ 1  
A1CEZ C2  C2  C  0 1 Y N N N N N -13.270 -16.429 -30.355 9.613  1.157  -0.650 C2  A1CEZ 2  
A1CEZ C4  C3  C  0 1 Y N N N N N -15.477 -15.818 -30.053 8.528  0.377  1.221  C4  A1CEZ 3  
A1CEZ C6  C4  C  0 1 Y N N N N N -14.169 -14.463 -31.426 7.304  1.663  -0.244 C6  A1CEZ 4  
A1CEZ C7  C5  C  0 1 N N N N N N -14.142 -13.256 -32.296 6.027  2.311  -0.623 C7  A1CEZ 5  
A1CEZ C11 C6  C  0 1 N N N N N N -13.159 -10.636 -29.997 2.596  1.505  -0.507 C11 A1CEZ 6  
A1CEZ C12 C7  C  0 1 N N N N N N -13.299 -9.369  -30.857 2.544  0.663  0.764  C12 A1CEZ 7  
A1CEZ C15 C8  C  0 1 N N N N N N -12.661 -7.305  -29.932 0.380  -0.065 1.315  C15 A1CEZ 8  
A1CEZ C16 C9  C  0 1 N N N N N N -12.168 -8.443  -30.487 1.496  -0.417 0.637  C16 A1CEZ 9  
A1CEZ C17 C10 C  0 1 N N N N N N -10.749 -8.582  -30.619 1.533  -1.653 -0.047 C17 A1CEZ 10 
A1CEZ C21 C11 C  0 1 Y N N N N N -8.289  -6.265  -29.676 -1.023 -4.049 -0.232 C21 A1CEZ 11 
A1CEZ N22 N1  N  0 1 N N N N N N -7.031  -5.673  -29.505 -1.677 -5.226 -0.587 N22 A1CEZ 12 
A1CEZ C23 C12 C  0 1 N N N N N N -5.863  -6.518  -29.822 -2.131 -5.957 0.606  C23 A1CEZ 13 
A1CEZ C24 C13 C  0 1 N N N N N N -4.591  -5.669  -29.855 -2.895 -7.210 0.170  C24 A1CEZ 14 
A1CEZ O25 O1  O  0 1 N N N N N N -4.497  -4.940  -28.632 -2.053 -8.009 -0.666 O25 A1CEZ 15 
A1CEZ C27 C14 C  0 1 N N N N N N -6.884  -4.803  -28.324 -0.816 -6.076 -1.422 C27 A1CEZ 16 
A1CEZ C31 C15 C  0 1 N N N N N N -12.326 -5.070  -28.946 -1.904 -0.525 2.068  C31 A1CEZ 17 
A1CEZ C32 C16 C  0 1 N N N N N N -12.482 -4.038  -30.029 -2.830 0.237  1.155  C32 A1CEZ 18 
A1CEZ C35 C17 C  0 1 Y N N N N N -13.397 -1.879  -30.631 -4.918 1.302  0.745  C35 A1CEZ 19 
A1CEZ C36 C18 C  0 1 Y N N N N N -12.909 -0.620  -30.292 -4.874 1.019  -0.614 C36 A1CEZ 20 
A1CEZ C37 C19 C  0 1 Y N N N N N -13.060 0.458   -31.143 -5.770 1.623  -1.474 C37 A1CEZ 21 
A1CEZ C38 C20 C  0 1 Y N N N N N -13.715 0.298   -32.348 -6.712 2.509  -0.983 C38 A1CEZ 22 
A1CEZ C39 C21 C  0 1 N N N N N N -13.874 1.485   -33.267 -7.688 3.166  -1.925 C39 A1CEZ 23 
A1CEZ N3  N2  N  0 1 Y N N N N N -14.461 -16.639 -29.812 9.615  0.474  0.479  N3  A1CEZ 24 
A1CEZ N5  N3  N  0 1 Y N N N N N -15.343 -14.762 -30.842 7.396  0.950  0.878  N5  A1CEZ 25 
A1CEZ O8  O2  O  0 1 N N N N N N -14.161 -13.440 -33.493 5.993  3.082  -1.562 O8  A1CEZ 26 
A1CEZ N9  N4  N  0 1 N N N N N N -14.189 -11.985 -31.799 4.904  2.046  0.072  N9  A1CEZ 27 
A1CEZ C10 C22 C  0 1 N N N N N N -14.186 -11.729 -30.338 3.619  2.633  -0.330 C10 A1CEZ 28 
A1CEZ C13 C23 C  0 1 N N N N N N -14.622 -8.636  -30.540 2.094  1.533  1.953  C13 A1CEZ 29 
A1CEZ C14 C24 C  0 1 N N N N N N -14.174 -7.320  -29.886 0.568  1.291  1.964  C14 A1CEZ 30 
A1CEZ O18 O3  O  0 1 N N N N N N -10.224 -9.567  -31.109 2.533  -1.982 -0.660 O18 A1CEZ 31 
A1CEZ N19 N5  N  0 1 Y N N N N N -9.941  -7.595  -30.207 0.463  -2.466 -0.020 N19 A1CEZ 32 
A1CEZ N20 N6  N  0 1 Y N N N N N -8.547  -7.437  -30.213 0.199  -3.721 -0.585 N20 A1CEZ 33 
A1CEZ C26 C25 C  0 1 N N N N N N -5.569  -4.019  -28.414 -1.593 -7.328 -1.838 C26 A1CEZ 34 
A1CEZ N28 N7  N  0 1 Y N N N N N -9.454  -5.693  -29.339 -1.539 -3.073 0.522  N28 A1CEZ 35 
A1CEZ C29 C26 C  0 1 Y N N N N N -10.455 -6.469  -29.650 -0.657 -2.105 0.663  C29 A1CEZ 36 
A1CEZ N30 N8  N  0 1 N N N N N N -11.809 -6.321  -29.507 -0.697 -0.906 1.332  N30 A1CEZ 37 
A1CEZ O33 O4  O  0 1 N N N N N N -12.015 -4.236  -31.144 -2.512 0.442  0.002  O33 A1CEZ 38 
A1CEZ N34 N9  N  0 1 N N N N N N -13.189 -2.921  -29.720 -4.011 0.692  1.619  N34 A1CEZ 39 
A1CEZ F40 F1  F  0 1 N N N N N N -12.627 2.043   -33.457 -8.039 4.426  -1.428 F40 A1CEZ 40 
A1CEZ F41 F2  F  0 1 N N N N N N -14.372 1.132   -34.521 -7.097 3.309  -3.184 F41 A1CEZ 41 
A1CEZ F42 F3  F  0 1 N N N N N N -14.705 2.438   -32.683 -8.835 2.372  -2.035 F42 A1CEZ 42 
A1CEZ C43 C27 C  0 1 Y N N N N N -14.202 -0.952  -32.696 -6.759 2.794  0.369  C43 A1CEZ 43 
A1CEZ C44 C28 C  0 1 Y N N N N N -14.060 -2.036  -31.848 -5.861 2.198  1.234  C44 A1CEZ 44 
A1CEZ CL4 CL1 CL 0 0 N N N N N N -14.722 -3.548  -32.368 -5.921 2.556  2.932  CL4 A1CEZ 45 
A1CEZ C46 C29 C  0 1 N N N N N N -13.229 -9.711  -32.340 3.909  0.046  1.057  C46 A1CEZ 46 
A1CEZ C47 C30 C  0 1 N N N N N N -14.232 -10.808 -32.709 4.942  1.162  1.247  C47 A1CEZ 47 
A1CEZ C48 C31 C  0 1 Y N N N N N -13.070 -15.317 -31.198 8.437  1.789  -1.058 C48 A1CEZ 48 
A1CEZ O49 O5  O  0 1 N N N N N N -11.862 -15.081 -31.775 8.393  2.505  -2.209 O49 A1CEZ 49 
A1CEZ H1  H1  H  0 1 N N N N N N -12.511 -18.178 -29.385 10.892 0.434  -2.198 H1  A1CEZ 50 
A1CEZ H2  H2  H  0 1 N N N N N N -11.794 -17.838 -30.996 10.865 2.205  -2.024 H2  A1CEZ 51 
A1CEZ H3  H3  H  0 1 N N N N N N -11.322 -16.845 -29.576 11.738 1.207  -0.836 H3  A1CEZ 52 
A1CEZ H4  H4  H  0 1 N N N N N N -16.435 -16.016 -29.595 8.569  -0.191 2.138  H4  A1CEZ 53 
A1CEZ H5  H5  H  0 1 N N N N N N -12.150 -11.048 -30.147 2.891  0.877  -1.348 H5  A1CEZ 54 
A1CEZ H6  H6  H  0 1 N N N N N N -13.288 -10.355 -28.941 1.613  1.933  -0.701 H6  A1CEZ 55 
A1CEZ H7  H7  H  0 1 N N N N N N -6.011  -6.989  -30.805 -1.268 -6.247 1.205  H7  A1CEZ 56 
A1CEZ H8  H8  H  0 1 N N N N N N -5.759  -7.298  -29.053 -2.786 -5.317 1.196  H8  A1CEZ 57 
A1CEZ H9  H9  H  0 1 N N N N N N -3.713  -6.322  -29.965 -3.184 -7.785 1.050  H9  A1CEZ 58 
A1CEZ H10 H10 H  0 1 N N N N N N -4.635  -4.968  -30.702 -3.787 -6.918 -0.384 H10 A1CEZ 59 
A1CEZ H11 H11 H  0 1 N N N N N N -7.727  -4.098  -28.283 -0.512 -5.524 -2.312 H11 A1CEZ 60 
A1CEZ H12 H12 H  0 1 N N N N N N -6.879  -5.421  -27.414 0.068  -6.367 -0.855 H12 A1CEZ 61 
A1CEZ H13 H13 H  0 1 N N N N N N -11.624 -4.696  -28.186 -1.630 0.105  2.915  H13 A1CEZ 62 
A1CEZ H14 H14 H  0 1 N N N N N N -13.305 -5.258  -28.480 -2.408 -1.421 2.430  H14 A1CEZ 63 
A1CEZ H15 H15 H  0 1 N N N N N N -12.404 -0.484  -29.347 -4.139 0.327  -0.998 H15 A1CEZ 64 
A1CEZ H16 H16 H  0 1 N N N N N N -12.666 1.425   -30.866 -5.735 1.403  -2.530 H16 A1CEZ 65 
A1CEZ H17 H17 H  0 1 N N N N N N -15.187 -11.399 -30.024 3.740  3.168  -1.271 H17 A1CEZ 66 
A1CEZ H18 H18 H  0 1 N N N N N N -13.922 -12.655 -29.807 3.273  3.321  0.442  H18 A1CEZ 67 
A1CEZ H19 H19 H  0 1 N N N N N N -15.191 -8.441  -31.461 2.550  1.190  2.881  H19 A1CEZ 68 
A1CEZ H20 H20 H  0 1 N N N N N N -14.579 -6.462  -30.443 0.059  2.061  1.386  H20 A1CEZ 69 
A1CEZ H21 H21 H  0 1 N N N N N N -5.400  -3.471  -27.475 -0.940 -7.989 -2.409 H21 A1CEZ 70 
A1CEZ H22 H22 H  0 1 N N N N N N -5.620  -3.306  -29.250 -2.447 -7.040 -2.450 H22 A1CEZ 71 
A1CEZ H23 H23 H  0 1 N N N N N N -13.578 -2.839  -28.802 -4.233 0.595  2.558  H23 A1CEZ 72 
A1CEZ H24 H24 H  0 1 N N N N N N -14.701 -1.082  -33.645 -7.496 3.487  0.749  H24 A1CEZ 73 
A1CEZ H25 H25 H  0 1 N N N N N N -12.213 -10.060 -32.579 3.849  -0.553 1.966  H25 A1CEZ 74 
A1CEZ H26 H26 H  0 1 N N N N N N -13.454 -8.808  -32.926 4.208  -0.588 0.223  H26 A1CEZ 75 
A1CEZ H27 H27 H  0 1 N N N N N N -15.244 -10.379 -32.675 5.936  0.727  1.345  H27 A1CEZ 76 
A1CEZ H28 H28 H  0 1 N N N N N N -14.013 -11.150 -33.731 4.701  1.735  2.142  H28 A1CEZ 77 
A1CEZ H29 H29 H  0 1 N N N N N N -11.247 -15.755 -31.510 8.618  3.439  -2.099 H29 A1CEZ 78 
A1CEZ H30 H30 H  0 1 N N N N N N -15.239 -9.226  -29.847 2.321  2.584  1.774  H30 A1CEZ 79 
A1CEZ H31 H31 H  0 1 N N N N N N -14.522 -7.277  -28.843 0.195  1.275  2.988  H31 A1CEZ 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1CEZ F41 C39 SING N N 1  
A1CEZ O8  C7  DOUB N N 2  
A1CEZ F40 C39 SING N N 3  
A1CEZ C39 F42 SING N N 4  
A1CEZ C39 C38 SING N N 5  
A1CEZ C47 C46 SING N N 6  
A1CEZ C47 N9  SING N N 7  
A1CEZ C43 C38 DOUB Y N 8  
A1CEZ C43 C44 SING Y N 9  
A1CEZ CL4 C44 SING N N 10 
A1CEZ C38 C37 SING Y N 11 
A1CEZ C46 C12 SING N N 12 
A1CEZ C7  N9  SING N N 13 
A1CEZ C7  C6  SING N N 14 
A1CEZ C44 C35 DOUB Y N 15 
A1CEZ N9  C10 SING N N 16 
A1CEZ O49 C48 SING N N 17 
A1CEZ C6  C48 DOUB Y N 18 
A1CEZ C6  N5  SING Y N 19 
A1CEZ C48 C2  SING Y N 20 
A1CEZ O33 C32 DOUB N N 21 
A1CEZ C37 C36 DOUB Y N 22 
A1CEZ O18 C17 DOUB N N 23 
A1CEZ C12 C13 SING N N 24 
A1CEZ C12 C16 SING N N 25 
A1CEZ C12 C11 SING N N 26 
A1CEZ N5  C4  DOUB Y N 27 
A1CEZ C35 C36 SING Y N 28 
A1CEZ C35 N34 SING N N 29 
A1CEZ C17 C16 SING N N 30 
A1CEZ C17 N19 SING N N 31 
A1CEZ C13 C14 SING N N 32 
A1CEZ C16 C15 DOUB N N 33 
A1CEZ C2  C1  SING N N 34 
A1CEZ C2  N3  DOUB Y N 35 
A1CEZ C10 C11 SING N N 36 
A1CEZ N20 N19 SING Y N 37 
A1CEZ N20 C21 DOUB Y N 38 
A1CEZ N19 C29 SING Y N 39 
A1CEZ C4  N3  SING Y N 40 
A1CEZ C32 N34 SING N N 41 
A1CEZ C32 C31 SING N N 42 
A1CEZ C15 C14 SING N N 43 
A1CEZ C15 N30 SING N N 44 
A1CEZ C24 C23 SING N N 45 
A1CEZ C24 O25 SING N N 46 
A1CEZ C23 N22 SING N N 47 
A1CEZ C21 N22 SING N N 48 
A1CEZ C21 N28 SING Y N 49 
A1CEZ C29 N30 SING N N 50 
A1CEZ C29 N28 DOUB Y N 51 
A1CEZ N30 C31 SING N N 52 
A1CEZ N22 C27 SING N N 53 
A1CEZ O25 C26 SING N N 54 
A1CEZ C26 C27 SING N N 55 
A1CEZ C1  H1  SING N N 56 
A1CEZ C1  H2  SING N N 57 
A1CEZ C1  H3  SING N N 58 
A1CEZ C4  H4  SING N N 59 
A1CEZ C11 H5  SING N N 60 
A1CEZ C11 H6  SING N N 61 
A1CEZ C23 H7  SING N N 62 
A1CEZ C23 H8  SING N N 63 
A1CEZ C24 H9  SING N N 64 
A1CEZ C24 H10 SING N N 65 
A1CEZ C27 H11 SING N N 66 
A1CEZ C27 H12 SING N N 67 
A1CEZ C31 H13 SING N N 68 
A1CEZ C31 H14 SING N N 69 
A1CEZ C36 H15 SING N N 70 
A1CEZ C37 H16 SING N N 71 
A1CEZ C10 H17 SING N N 72 
A1CEZ C10 H18 SING N N 73 
A1CEZ C13 H19 SING N N 74 
A1CEZ C14 H20 SING N N 75 
A1CEZ C26 H21 SING N N 76 
A1CEZ C26 H22 SING N N 77 
A1CEZ N34 H23 SING N N 78 
A1CEZ C43 H24 SING N N 79 
A1CEZ C46 H25 SING N N 80 
A1CEZ C46 H26 SING N N 81 
A1CEZ C47 H27 SING N N 82 
A1CEZ C47 H28 SING N N 83 
A1CEZ O49 H29 SING N N 84 
A1CEZ C13 H30 SING N N 85 
A1CEZ C14 H31 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1CEZ SMILES           ACDLabs              14.52   "FC(F)(F)c1ccc(NC(=O)CN2C=3CCC4(CCN(CC4)C(=O)c4ncnc(C)c4O)C=3C(=O)n3nc(nc32)N2CCOCC2)c(Cl)c1"                                                                                                                                    
A1CEZ InChI            InChI                1.06    "InChI=1S/C31H31ClF3N9O5/c1-17-25(46)24(37-16-36-17)27(48)41-8-6-30(7-9-41)5-4-21-23(30)26(47)44-29(39-28(40-44)42-10-12-49-13-11-42)43(21)15-22(45)38-20-3-2-18(14-19(20)32)31(33,34)35/h2-3,14,16,46H,4-13,15H2,1H3,(H,38,45)" 
A1CEZ InChIKey         InChI                1.06    LEDZBLSYHCZVSS-UHFFFAOYSA-N                                                                                                                                                                                                      
A1CEZ SMILES_CANONICAL CACTVS               3.385   "Cc1ncnc(c1O)C(=O)N2CCC3(CC2)CCC4=C3C(=O)n5nc(nc5N4CC(=O)Nc6ccc(cc6Cl)C(F)(F)F)N7CCOCC7"                                                                                                                                         
A1CEZ SMILES           CACTVS               3.385   "Cc1ncnc(c1O)C(=O)N2CCC3(CC2)CCC4=C3C(=O)n5nc(nc5N4CC(=O)Nc6ccc(cc6Cl)C(F)(F)F)N7CCOCC7"                                                                                                                                         
A1CEZ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(ncn1)C(=O)N2CCC3(CCC4=C3C(=O)n5c(nc(n5)N6CCOCC6)N4CC(=O)Nc7ccc(cc7Cl)C(F)(F)F)CC2)O"                                                                                                                                     
A1CEZ SMILES           "OpenEye OEToolkits" 3.1.0.0 "Cc1c(c(ncn1)C(=O)N2CCC3(CCC4=C3C(=O)n5c(nc(n5)N6CCOCC6)N4CC(=O)Nc7ccc(cc7Cl)C(F)(F)F)CC2)O"                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1CEZ "SYSTEMATIC NAME" ACDLabs              14.52   "N-[2-chloro-4-(trifluoromethyl)phenyl]-2-[(9R)-1'-(5-hydroxy-6-methylpyrimidine-4-carbonyl)-2-(morpholin-4-yl)-8-oxo-5,8-dihydrospiro[cyclopenta[d][1,2,4]triazolo[1,5-a]pyrimidine-7,4'-piperidin]-4(6H)-yl]acetamide"                   
A1CEZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[2-chloranyl-4-(trifluoromethyl)phenyl]-2-[1'-(6-methyl-5-oxidanyl-pyrimidin-4-yl)carbonyl-11-morpholin-4-yl-2-oxidanylidene-spiro[1,8,10,12-tetrazatricyclo[7.3.0.0^{3,7}]dodeca-3(7),9,11-triene-4,4'-piperidine]-8-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1CEZ "Create component" 2025-06-03 RCSB 
A1CEZ "Initial release"  2025-09-10 RCSB 
# 
