data_A1EBZ
# 
_chem_comp.id                                    A1EBZ 
_chem_comp.name                                  "(1Z,3E,5E,7S,8R,9S,10S,11R,13R,15S,16Z,18E,24S)-11-ethyl-2,7-dihydroxy-10-methyl-21,25-diazatetracyclo[22.2.1.08,15.09,13]heptacosa-1,3,5,16,18-pentaene-20,26,27-trione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H38 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-09-14 
_chem_comp.pdbx_modified_date                    2025-06-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        494.622 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1EBZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9JI7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1EBZ C8  C1  C 0 1 N N S N N N -18.369 13.734 16.842 -18.369 13.734 16.842 C8  A1EBZ 1  
A1EBZ C5  C2  C 0 1 N N N N N N -13.724 12.230 16.658 -13.724 12.230 16.658 C5  A1EBZ 2  
A1EBZ C6  C3  C 0 1 N N S N N N -16.102 13.035 17.350 -16.102 13.035 17.350 C6  A1EBZ 3  
A1EBZ N1  N1  N 0 1 N N N N N N -23.898 17.267 15.928 -23.898 17.267 15.928 N1  A1EBZ 4  
A1EBZ C2  C4  C 0 1 N N N N N N -14.478 9.862  18.831 -14.478 9.862  18.831 C2  A1EBZ 5  
A1EBZ C4  C5  C 0 1 N N S N N N -15.093 11.864 17.214 -15.093 11.864 17.214 C4  A1EBZ 6  
A1EBZ C21 C6  C 0 1 N N N N N N -21.411 17.542 12.869 -21.411 17.542 12.869 C21 A1EBZ 7  
A1EBZ C23 C7  C 0 1 N N N N N N -19.464 16.233 13.559 -19.464 16.233 13.559 C23 A1EBZ 8  
A1EBZ C24 C8  C 0 1 N N N N N N -18.311 15.874 14.329 -18.311 15.874 14.329 C24 A1EBZ 9  
A1EBZ C25 C9  C 0 1 N N N N N N -17.626 14.750 14.208 -17.626 14.750 14.208 C25 A1EBZ 10 
A1EBZ C27 C10 C 0 1 N N N N N N -18.468 12.625 17.887 -18.468 12.625 17.887 C27 A1EBZ 11 
A1EBZ C29 C11 C 0 1 N N N N N N -16.627 11.236 18.931 -16.627 11.236 18.931 C29 A1EBZ 12 
A1EBZ C1  C12 C 0 1 N N N N N N -14.749 9.267  20.203 -14.749 9.267  20.203 C1  A1EBZ 13 
A1EBZ C10 C13 C 0 1 N N N N N N -19.457 15.960 17.461 -19.457 15.960 17.461 C10 A1EBZ 14 
A1EBZ C11 C14 C 0 1 N N N N N N -20.736 15.813 16.786 -20.736 15.813 16.786 C11 A1EBZ 15 
A1EBZ C12 C15 C 0 1 N N N N N N -21.790 16.627 16.724 -21.790 16.627 16.724 C12 A1EBZ 16 
A1EBZ C13 C16 C 0 1 N N N N N N -22.918 16.348 15.941 -22.918 16.348 15.941 C13 A1EBZ 17 
A1EBZ C14 C17 C 0 1 N N N N N N -23.902 18.515 16.682 -23.902 18.515 16.682 C14 A1EBZ 18 
A1EBZ C15 C18 C 0 1 N N N N N N -24.928 19.434 16.030 -24.928 19.434 16.030 C15 A1EBZ 19 
A1EBZ C16 C19 C 0 1 N N N N N N -24.374 20.634 15.268 -24.374 20.634 15.268 C16 A1EBZ 20 
A1EBZ C17 C20 C 0 1 N N S N N N -23.653 20.352 13.943 -23.653 20.352 13.943 C17 A1EBZ 21 
A1EBZ C18 C21 C 0 1 N N N N N N -22.324 19.590 14.031 -22.324 19.590 14.031 C18 A1EBZ 22 
A1EBZ C19 C22 C 0 1 N N N N N N -22.407 18.479 13.125 -22.407 18.479 13.125 C19 A1EBZ 23 
A1EBZ C20 C23 C 0 1 N N N N N N -23.769 18.481 12.555 -23.769 18.481 12.555 C20 A1EBZ 24 
A1EBZ C22 C24 C 0 1 N N N N N N -20.296 17.318 13.686 -20.296 17.318 13.686 C22 A1EBZ 25 
A1EBZ C26 C25 C 0 1 N N S N N N -16.502 14.338 15.110 -16.502 14.338 15.110 C26 A1EBZ 26 
A1EBZ C28 C26 C 0 1 N N R N N N -17.066 12.642 18.506 -17.066 12.642 18.506 C28 A1EBZ 27 
A1EBZ C3  C27 C 0 1 N N R N N N -15.122 11.236 18.631 -15.122 11.236 18.631 C3  A1EBZ 28 
A1EBZ C7  C28 C 0 1 N N R N N N -17.034 13.358 16.159 -17.034 13.358 16.159 C7  A1EBZ 29 
A1EBZ C9  C29 C 0 1 N N N N N N -18.432 15.084 17.490 -18.432 15.084 17.490 C9  A1EBZ 30 
A1EBZ N2  N2  N 0 1 N N N N N N -24.431 19.549 13.017 -24.431 19.549 13.017 N2  A1EBZ 31 
A1EBZ O1  O1  O 0 1 N N N N N N -24.225 17.639 11.747 -24.225 17.639 11.747 O1  A1EBZ 32 
A1EBZ O2  O2  O 0 1 N N N N N N -21.555 16.739 11.820 -21.555 16.739 11.820 O2  A1EBZ 33 
A1EBZ O3  O3  O 0 1 N N N N N N -15.393 13.809 14.393 -15.393 13.809 14.393 O3  A1EBZ 34 
A1EBZ O4  O4  O 0 1 N N N N N N -21.383 19.939 14.741 -21.383 19.939 14.741 O4  A1EBZ 35 
A1EBZ O5  O5  O 0 1 N N N N N N -23.020 15.313 15.273 -23.020 15.313 15.273 O5  A1EBZ 36 
A1EBZ H1  H1  H 0 1 N N N N N N -19.189 13.629 16.117 -19.189 13.629 16.117 H1  A1EBZ 37 
A1EBZ H2  H2  H 0 1 N N N N N N -13.096 11.329 16.606 -13.096 11.328 16.606 H2  A1EBZ 38 
A1EBZ H3  H3  H 0 1 N N N N N N -13.839 12.655 15.650 -13.839 12.655 15.650 H3  A1EBZ 39 
A1EBZ H4  H4  H 0 1 N N N N N N -13.247 12.971 17.316 -13.247 12.972 17.316 H4  A1EBZ 40 
A1EBZ H5  H5  H 0 1 N N N N N N -15.556 13.946 17.635 -15.556 13.946 17.635 H5  A1EBZ 41 
A1EBZ H6  H6  H 0 1 N N N N N N -24.693 17.079 15.352 -24.693 17.079 15.351 H6  A1EBZ 42 
A1EBZ H7  H7  H 0 1 N N N N N N -14.874 9.176  18.068 -14.874 9.176  18.068 H7  A1EBZ 43 
A1EBZ H8  H8  H 0 1 N N N N N N -13.390 9.964  18.703 -13.390 9.964  18.703 H8  A1EBZ 44 
A1EBZ H9  H9  H 0 1 N N N N N N -15.541 11.131 16.527 -15.541 11.131 16.527 H9  A1EBZ 45 
A1EBZ H10 H10 H 0 1 N N N N N N -19.716 15.550 12.761 -19.716 15.550 12.761 H10 A1EBZ 46 
A1EBZ H12 H12 H 0 1 N N N N N N -17.973 16.582 15.071 -17.972 16.582 15.071 H12 A1EBZ 47 
A1EBZ H13 H13 H 0 1 N N N N N N -17.895 14.082 13.403 -17.895 14.082 13.403 H13 A1EBZ 48 
A1EBZ H14 H14 H 0 1 N N N N N N -19.239 12.852 18.638 -19.239 12.852 18.638 H14 A1EBZ 49 
A1EBZ H15 H15 H 0 1 N N N N N N -18.686 11.654 17.419 -18.686 11.654 17.419 H15 A1EBZ 50 
A1EBZ H16 H16 H 0 1 N N N N N N -16.816 11.070 20.002 -16.816 11.070 20.002 H16 A1EBZ 51 
A1EBZ H17 H17 H 0 1 N N N N N N -17.147 10.465 18.343 -17.147 10.465 18.343 H17 A1EBZ 52 
A1EBZ H18 H18 H 0 1 N N N N N N -14.260 8.285  20.280 -14.260 8.285  20.280 H18 A1EBZ 53 
A1EBZ H19 H19 H 0 1 N N N N N N -14.349 9.937  20.979 -14.349 9.937  20.979 H19 A1EBZ 54 
A1EBZ H20 H20 H 0 1 N N N N N N -15.834 9.149  20.344 -15.834 9.149  20.344 H20 A1EBZ 55 
A1EBZ H21 H21 H 0 1 N N N N N N -19.310 16.882 18.005 -19.310 16.882 18.005 H21 A1EBZ 56 
A1EBZ H22 H22 H 0 1 N N N N N N -20.852 14.887 16.242 -20.852 14.887 16.242 H22 A1EBZ 57 
A1EBZ H23 H23 H 0 1 N N N N N N -21.774 17.540 17.301 -21.774 17.540 17.301 H23 A1EBZ 58 
A1EBZ H24 H24 H 0 1 N N N N N N -24.181 18.322 17.728 -24.181 18.322 17.728 H24 A1EBZ 59 
A1EBZ H25 H25 H 0 1 N N N N N N -22.905 18.979 16.648 -22.905 18.979 16.648 H25 A1EBZ 60 
A1EBZ H26 H26 H 0 1 N N N N N N -25.587 19.816 16.823 -25.587 19.816 16.823 H26 A1EBZ 61 
A1EBZ H27 H27 H 0 1 N N N N N N -25.517 18.831 15.323 -25.517 18.831 15.323 H27 A1EBZ 62 
A1EBZ H28 H28 H 0 1 N N N N N N -23.660 21.146 15.930 -23.660 21.146 15.931 H28 A1EBZ 63 
A1EBZ H29 H29 H 0 1 N N N N N N -25.218 21.305 15.049 -25.218 21.305 15.049 H29 A1EBZ 64 
A1EBZ H30 H30 H 0 1 N N N N N N -23.444 21.323 13.470 -23.444 21.323 13.470 H30 A1EBZ 65 
A1EBZ H32 H32 H 0 1 N N N N N N -20.078 18.039 14.460 -20.078 18.039 14.460 H32 A1EBZ 66 
A1EBZ H33 H33 H 0 1 N N N N N N -16.168 15.236 15.650 -16.168 15.236 15.650 H33 A1EBZ 67 
A1EBZ H34 H34 H 0 1 N N N N N N -17.000 13.356 19.340 -17.000 13.356 19.340 H34 A1EBZ 68 
A1EBZ H35 H35 H 0 1 N N N N N N -14.638 11.942 19.322 -14.638 11.942 19.322 H35 A1EBZ 69 
A1EBZ H36 H36 H 0 1 N N N N N N -17.210 12.406 15.637 -17.211 12.406 15.637 H36 A1EBZ 70 
A1EBZ H37 H37 H 0 1 N N N N N N -17.557 15.390 18.043 -17.557 15.390 18.043 H37 A1EBZ 71 
A1EBZ H38 H38 H 0 1 N N N N N N -25.369 19.772 12.751 -25.369 19.772 12.751 H38 A1EBZ 72 
A1EBZ H39 H39 H 0 1 N N N N N N -22.447 16.796 11.497 -22.447 16.796 11.497 H39 A1EBZ 73 
A1EBZ H40 H40 H 0 1 N N N N N N -14.709 13.563 15.004 -14.708 13.563 15.004 H40 A1EBZ 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1EBZ O1  C20 DOUB N N 1  
A1EBZ O2  C21 SING N N 2  
A1EBZ C20 N2  SING N N 3  
A1EBZ C20 C19 SING N N 4  
A1EBZ C21 C19 DOUB N Z 5  
A1EBZ C21 C22 SING N N 6  
A1EBZ N2  C17 SING N N 7  
A1EBZ C19 C18 SING N N 8  
A1EBZ C23 C22 DOUB N E 9  
A1EBZ C23 C24 SING N N 10 
A1EBZ C17 C18 SING N N 11 
A1EBZ C17 C16 SING N N 12 
A1EBZ C18 O4  DOUB N N 13 
A1EBZ C25 C24 DOUB N E 14 
A1EBZ C25 C26 SING N N 15 
A1EBZ O3  C26 SING N N 16 
A1EBZ C26 C7  SING N N 17 
A1EBZ C16 C15 SING N N 18 
A1EBZ O5  C13 DOUB N N 19 
A1EBZ N1  C13 SING N N 20 
A1EBZ N1  C14 SING N N 21 
A1EBZ C13 C12 SING N N 22 
A1EBZ C15 C14 SING N N 23 
A1EBZ C7  C8  SING N N 24 
A1EBZ C7  C6  SING N N 25 
A1EBZ C5  C4  SING N N 26 
A1EBZ C12 C11 DOUB N E 27 
A1EBZ C11 C10 SING N N 28 
A1EBZ C8  C9  SING N N 29 
A1EBZ C8  C27 SING N N 30 
A1EBZ C4  C6  SING N N 31 
A1EBZ C4  C3  SING N N 32 
A1EBZ C6  C28 SING N N 33 
A1EBZ C10 C9  DOUB N Z 34 
A1EBZ C27 C28 SING N N 35 
A1EBZ C28 C29 SING N N 36 
A1EBZ C3  C2  SING N N 37 
A1EBZ C3  C29 SING N N 38 
A1EBZ C2  C1  SING N N 39 
A1EBZ C8  H1  SING N N 40 
A1EBZ C5  H2  SING N N 41 
A1EBZ C5  H3  SING N N 42 
A1EBZ C5  H4  SING N N 43 
A1EBZ C6  H5  SING N N 44 
A1EBZ N1  H6  SING N N 45 
A1EBZ C2  H7  SING N N 46 
A1EBZ C2  H8  SING N N 47 
A1EBZ C4  H9  SING N N 48 
A1EBZ C23 H10 SING N N 49 
A1EBZ C24 H12 SING N N 50 
A1EBZ C25 H13 SING N N 51 
A1EBZ C27 H14 SING N N 52 
A1EBZ C27 H15 SING N N 53 
A1EBZ C29 H16 SING N N 54 
A1EBZ C29 H17 SING N N 55 
A1EBZ C1  H18 SING N N 56 
A1EBZ C1  H19 SING N N 57 
A1EBZ C1  H20 SING N N 58 
A1EBZ C10 H21 SING N N 59 
A1EBZ C11 H22 SING N N 60 
A1EBZ C12 H23 SING N N 61 
A1EBZ C14 H24 SING N N 62 
A1EBZ C14 H25 SING N N 63 
A1EBZ C15 H26 SING N N 64 
A1EBZ C15 H27 SING N N 65 
A1EBZ C16 H28 SING N N 66 
A1EBZ C16 H29 SING N N 67 
A1EBZ C17 H30 SING N N 68 
A1EBZ C22 H32 SING N N 69 
A1EBZ C26 H33 SING N N 70 
A1EBZ C28 H34 SING N N 71 
A1EBZ C3  H35 SING N N 72 
A1EBZ C7  H36 SING N N 73 
A1EBZ C9  H37 SING N N 74 
A1EBZ N2  H38 SING N N 75 
A1EBZ O2  H39 SING N N 76 
A1EBZ O3  H40 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1EBZ InChI            InChI                1.06  "InChI=1S/C29H38N2O5/c1-3-18-15-20-16-19-9-4-7-13-24(34)30-14-8-10-21-28(35)27(29(36)31-21)23(33)12-6-5-11-22(32)26(19)25(20)17(18)2/h4-7,9,11-13,17-22,25-26,32-33H,3,8,10,14-16H2,1-2H3,(H,30,34)(H,31,36)/b9-4-,11-5+,12-6+,13-7+,27-23-/t17-,18+,19+,20+,21-,22-,25+,26-/m0/s1" 
A1EBZ InChIKey         InChI                1.06  RKVKDOPZGFNWBV-XKSCADSQSA-N                                                                                                                                                                                                                                                         
A1EBZ SMILES_CANONICAL CACTVS               3.385 "CC[C@@H]1C[C@@H]2C[C@H]3\C=C/C=C/C(=O)NCCC[C@@H]4NC(=O)C(=C(O)/C=C/C=C/[C@H](O)[C@H]3[C@@H]2[C@H]1C)/C4=O"                                                                                                                                                                         
A1EBZ SMILES           CACTVS               3.385 "CC[CH]1C[CH]2C[CH]3C=CC=CC(=O)NCCC[CH]4NC(=O)C(=C(O)C=CC=C[CH](O)[CH]3[CH]2[CH]1C)C4=O"                                                                                                                                                                                            
A1EBZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H]1C[C@@H]2C[C@H]3/C=C\C=C\C(=O)NCCC[C@H]4C(=O)/C(=C(\C=C\C=C\[C@@H]([C@H]3[C@@H]2[C@H]1C)O)/O)/C(=O)N4"                                                                                                                                                                     
A1EBZ SMILES           "OpenEye OEToolkits" 2.0.7 "CCC1CC2CC3C=CC=CC(=O)NCCCC4C(=O)C(=C(C=CC=CC(C3C2C1C)O)O)C(=O)N4"                                                                                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1EBZ "Create component" 2024-09-14 PDBC 
A1EBZ "Initial release"  2025-06-18 RCSB 
# 
