data_A1IZZ
# 
_chem_comp.id                                    A1IZZ 
_chem_comp.name                                  "[[(2~{R},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[(phenylmethyl)-propyl-amino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H28 Cl N5 O9 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2025-01-28 
_chem_comp.pdbx_modified_date                    2025-06-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        591.876 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IZZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9I1H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IZZ N1  N1  N  0 1 Y N N N N N 21.857 37.059 0.837  2.867  1.643  1.284  N1  A1IZZ 1  
A1IZZ N3  N2  N  0 1 N N N N N N 24.800 35.076 -1.395 4.620  -2.026 0.763  N3  A1IZZ 2  
A1IZZ C4  C1  C  0 1 N N N N N N 17.975 32.263 3.185  -3.584 1.497  -0.757 C4  A1IZZ 3  
A1IZZ C5  C2  C  0 1 N N N N N N 18.387 29.366 3.917  -6.591 -0.799 1.020  C5  A1IZZ 4  
A1IZZ C6  C3  C  0 1 Y N N N N N 21.856 35.726 0.734  2.092  0.659  0.840  C6  A1IZZ 5  
A1IZZ C7  C4  C  0 1 Y N N N N N 22.871 37.583 0.174  4.142  1.431  1.541  C7  A1IZZ 6  
A1IZZ C8  C5  C  0 1 Y N N N N N 23.795 35.660 -0.629 4.015  -0.793 0.934  C8  A1IZZ 7  
A1IZZ C10 C6  C  0 1 N N N N N N 25.628 36.722 -3.086 6.584  -3.392 1.286  C10 A1IZZ 8  
A1IZZ C13 C7  C  0 1 Y N N N N N 25.218 33.382 -3.186 5.179  -1.600 -1.563 C13 A1IZZ 9  
A1IZZ C15 C8  C  0 1 Y N N N N N 26.849 32.604 -4.780 7.140  -1.071 -2.832 C15 A1IZZ 10 
A1IZZ C17 C9  C  0 1 Y N N N N N 24.723 33.354 -5.543 5.235  0.377  -2.913 C17 A1IZZ 11 
A1IZZ C20 C10 C  0 1 Y N N N N N 21.381 33.602 0.913  0.555  -0.739 0.102  C20 A1IZZ 12 
A1IZZ N   N3  N  0 1 Y N N N N N 20.962 34.850 1.293  0.771  0.550  0.488  N   A1IZZ 13 
A1IZZ C   C11 C  0 1 N N S N N N 17.707 34.248 1.604  -1.607 3.046  -0.847 C   A1IZZ 14 
A1IZZ O   O1  O  0 1 N N N N N N 16.315 34.538 1.658  -1.621 4.379  -0.332 O   A1IZZ 15 
A1IZZ C1  C12 C  0 1 N N R N N N 18.540 35.518 1.426  -0.177 2.456  -0.784 C1  A1IZZ 16 
A1IZZ C11 C13 C  0 1 N N N N N N 26.888 37.318 -3.659 8.034  -3.333 1.770  C11 A1IZZ 17 
A1IZZ C12 C14 C  0 1 N N N N N N 24.799 33.659 -1.762 4.446  -2.511 -0.613 C12 A1IZZ 18 
A1IZZ C14 C15 C  0 1 Y N N N N N 26.476 32.870 -3.473 6.467  -1.908 -1.960 C14 A1IZZ 19 
A1IZZ C16 C16 C  0 1 Y N N N N N 25.972 32.846 -5.814 6.525  0.072  -3.306 C16 A1IZZ 20 
A1IZZ C18 C17 C  0 1 Y N N N N N 24.347 33.621 -4.237 4.562  -0.459 -2.041 C18 A1IZZ 21 
A1IZZ C19 C18 C  0 1 Y N N N N N 22.769 34.953 0.040  2.651  -0.615 0.647  C19 A1IZZ 22 
A1IZZ C2  C19 C  0 1 N N R N N N 19.842 35.175 2.166  -0.226 1.623  0.522  C2  A1IZZ 23 
A1IZZ C3  C20 C  0 1 N N R N N N 18.175 33.740 2.955  -2.440 2.112  0.051  C3  A1IZZ 24 
A1IZZ C9  C21 C  0 1 N N N N N N 25.932 35.884 -1.864 6.042  -1.970 1.126  C9  A1IZZ 25 
A1IZZ N2  N4  N  0 1 Y N N N N N 23.815 37.000 -0.547 4.711  0.250  1.375  N2  A1IZZ 26 
A1IZZ N4  N5  N  0 1 Y N N N N N 22.456 33.604 0.167  1.660  -1.421 0.195  N4  A1IZZ 27 
A1IZZ O1  O2  O  0 1 N N N N N N 17.918 36.645 2.031  0.800  3.495  -0.689 O1  A1IZZ 28 
A1IZZ O2  O3  O  0 1 N N N N N N 19.584 34.046 2.982  -1.562 1.076  0.522  O2  A1IZZ 29 
A1IZZ O3  O4  O  0 1 N N N N N N 18.612 31.927 4.427  -4.419 0.726  0.109  O3  A1IZZ 30 
A1IZZ O4  O5  O  0 1 N N N N N N 19.814 28.107 2.048  -8.835 -2.342 1.696  O4  A1IZZ 31 
A1IZZ O5  O6  O  0 1 N N N N N N 20.902 28.524 4.251  -9.052 -0.671 -0.322 O5  A1IZZ 32 
A1IZZ O6  O7  O  0 1 N N N N N N 20.562 30.436 2.637  -7.658 -2.768 -0.496 O6  A1IZZ 33 
A1IZZ O7  O8  O  0 1 N N N N N N 16.763 30.725 5.583  -5.277 -1.233 -1.421 O7  A1IZZ 34 
A1IZZ O8  O9  O  0 1 N N N N N N 19.075 30.457 6.463  -6.628 0.875  -1.104 O8  A1IZZ 35 
A1IZZ P   P1  P  0 1 N N N N N N 18.268 30.611 5.208  -5.723 -0.066 -0.406 P   A1IZZ 36 
A1IZZ P1  P2  P  0 1 N N N N N N 20.003 29.154 3.165  -8.068 -1.695 0.437  P1  A1IZZ 37 
A1IZZ CL  CL1 CL 0 0 N N N N N N 23.011 39.309 0.301  5.109  2.751  2.120  CL  A1IZZ 38 
A1IZZ H6  H1  H  0 1 N N N N N N 16.901 32.034 3.241  -4.173 2.291  -1.216 H6  A1IZZ 39 
A1IZZ H7  H2  H  0 1 N N N N N N 18.430 31.690 2.363  -3.174 0.853  -1.535 H7  A1IZZ 40 
A1IZZ H9  H3  H  0 1 N N N N N N 17.680 29.640 3.120  -5.925 -1.492 1.533  H9  A1IZZ 41 
A1IZZ H8  H4  H  0 1 N N N N N N 18.091 28.401 4.354  -6.894 -0.008 1.707  H8  A1IZZ 42 
A1IZZ H16 H5  H  0 1 N N N N N N 24.942 37.534 -2.804 6.542  -3.907 0.326  H16 A1IZZ 43 
A1IZZ H15 H6  H  0 1 N N N N N N 25.151 36.088 -3.848 5.979  -3.932 2.014  H15 A1IZZ 44 
A1IZZ H23 H7  H  0 1 N N N N N N 27.831 32.206 -4.989 8.146  -1.312 -3.142 H23 A1IZZ 45 
A1IZZ H25 H8  H  0 1 N N N N N N 24.033 33.545 -6.351 4.753  1.268  -3.287 H25 A1IZZ 46 
A1IZZ H27 H9  H  0 1 N N N N N N 20.869 32.697 1.204  -0.392 -1.136 -0.233 H27 A1IZZ 47 
A1IZZ H   H10 H  0 1 N N N N N N 17.945 33.520 0.814  -1.984 3.029  -1.870 H   A1IZZ 48 
A1IZZ H4  H11 H  0 1 N N N N N N 15.827 33.731 1.769  -1.111 5.010  -0.859 H4  A1IZZ 49 
A1IZZ H1  H12 H  0 1 N N N N N N 18.746 35.690 0.359  0.019  1.818  -1.646 H1  A1IZZ 50 
A1IZZ H18 H13 H  0 1 N N N N N N 26.639 37.921 -4.545 8.420  -4.346 1.884  H18 A1IZZ 51 
A1IZZ H19 H14 H  0 1 N N N N N N 27.368 37.957 -2.903 8.639  -2.793 1.042  H19 A1IZZ 52 
A1IZZ H17 H15 H  0 1 N N N N N N 27.577 36.511 -3.947 8.076  -2.819 2.730  H17 A1IZZ 53 
A1IZZ H21 H16 H  0 1 N N N N N N 23.781 33.268 -1.621 4.847  -3.521 -0.695 H21 A1IZZ 54 
A1IZZ H20 H17 H  0 1 N N N N N N 25.491 33.130 -1.091 3.385  -2.520 -0.864 H20 A1IZZ 55 
A1IZZ H22 H18 H  0 1 N N N N N N 27.171 32.677 -2.669 6.948  -2.801 -1.590 H22 A1IZZ 56 
A1IZZ H24 H19 H  0 1 N N N N N N 26.264 32.638 -6.833 7.050  0.725  -3.987 H24 A1IZZ 57 
A1IZZ H26 H20 H  0 1 N N N N N N 23.364 34.020 -4.035 3.554  -0.221 -1.734 H26 A1IZZ 58 
A1IZZ H2  H21 H  0 1 N N N N N N 20.114 36.034 2.797  -0.071 2.262  1.391  H2  A1IZZ 59 
A1IZZ H3  H22 H  0 1 N N N N N N 17.654 34.300 3.746  -2.841 2.671  0.897  H3  A1IZZ 60 
A1IZZ H14 H23 H  0 1 N N N N N N 26.763 35.206 -2.108 6.597  -1.456 0.342  H14 A1IZZ 61 
A1IZZ H13 H24 H  0 1 N N N N N N 26.236 36.558 -1.050 6.156  -1.430 2.066  H13 A1IZZ 62 
A1IZZ H5  H25 H  0 1 N N N N N N 18.461 37.414 1.902  0.807  4.098  -1.445 H5  A1IZZ 63 
A1IZZ H10 H26 H  0 1 N N N N N N 20.092 28.475 1.218  -9.633 -2.835 1.459  H10 A1IZZ 64 
A1IZZ H11 H27 H  0 1 N N N N N N 21.663 29.075 4.391  -9.361 0.060  0.230  H11 A1IZZ 65 
A1IZZ H12 H28 H  0 1 N N N N N N 16.667 30.674 6.527  -4.682 -1.888 -1.030 H12 A1IZZ 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IZZ C16 C17 DOUB Y N 1  
A1IZZ C16 C15 SING Y N 2  
A1IZZ C17 C18 SING Y N 3  
A1IZZ C15 C14 DOUB Y N 4  
A1IZZ C18 C13 DOUB Y N 5  
A1IZZ C11 C10 SING N N 6  
A1IZZ C14 C13 SING Y N 7  
A1IZZ C13 C12 SING N N 8  
A1IZZ C10 C9  SING N N 9  
A1IZZ C9  N3  SING N N 10 
A1IZZ C12 N3  SING N N 11 
A1IZZ N3  C8  SING N N 12 
A1IZZ C8  N2  DOUB Y N 13 
A1IZZ C8  C19 SING Y N 14 
A1IZZ N2  C7  SING Y N 15 
A1IZZ C19 N4  SING Y N 16 
A1IZZ C19 C6  DOUB Y N 17 
A1IZZ N4  C20 DOUB Y N 18 
A1IZZ C7  CL  SING N N 19 
A1IZZ C7  N1  DOUB Y N 20 
A1IZZ C6  N1  SING Y N 21 
A1IZZ C6  N   SING Y N 22 
A1IZZ C20 N   SING Y N 23 
A1IZZ N   C2  SING N N 24 
A1IZZ C1  C   SING N N 25 
A1IZZ C1  O1  SING N N 26 
A1IZZ C1  C2  SING N N 27 
A1IZZ C   O   SING N N 28 
A1IZZ C   C3  SING N N 29 
A1IZZ O4  P1  SING N N 30 
A1IZZ C2  O2  SING N N 31 
A1IZZ O6  P1  DOUB N N 32 
A1IZZ C3  O2  SING N N 33 
A1IZZ C3  C4  SING N N 34 
A1IZZ P1  C5  SING N N 35 
A1IZZ P1  O5  SING N N 36 
A1IZZ C4  O3  SING N N 37 
A1IZZ C5  P   SING N N 38 
A1IZZ O3  P   SING N N 39 
A1IZZ P   O7  SING N N 40 
A1IZZ P   O8  DOUB N N 41 
A1IZZ C4  H6  SING N N 42 
A1IZZ C4  H7  SING N N 43 
A1IZZ C5  H9  SING N N 44 
A1IZZ C5  H8  SING N N 45 
A1IZZ C10 H16 SING N N 46 
A1IZZ C10 H15 SING N N 47 
A1IZZ C15 H23 SING N N 48 
A1IZZ C17 H25 SING N N 49 
A1IZZ C20 H27 SING N N 50 
A1IZZ C   H   SING N N 51 
A1IZZ O   H4  SING N N 52 
A1IZZ C1  H1  SING N N 53 
A1IZZ C11 H18 SING N N 54 
A1IZZ C11 H19 SING N N 55 
A1IZZ C11 H17 SING N N 56 
A1IZZ C12 H21 SING N N 57 
A1IZZ C12 H20 SING N N 58 
A1IZZ C14 H22 SING N N 59 
A1IZZ C16 H24 SING N N 60 
A1IZZ C18 H26 SING N N 61 
A1IZZ C2  H2  SING N N 62 
A1IZZ C3  H3  SING N N 63 
A1IZZ C9  H14 SING N N 64 
A1IZZ C9  H13 SING N N 65 
A1IZZ O1  H5  SING N N 66 
A1IZZ O4  H10 SING N N 67 
A1IZZ O5  H11 SING N N 68 
A1IZZ O7  H12 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IZZ InChI            InChI                1.06  "InChI=1S/C21H28ClN5O9P2/c1-2-8-26(9-13-6-4-3-5-7-13)18-15-19(25-21(22)24-18)27(11-23-15)20-17(29)16(28)14(36-20)10-35-38(33,34)12-37(30,31)32/h3-7,11,14,16-17,20,28-29H,2,8-10,12H2,1H3,(H,33,34)(H2,30,31,32)/t14-,16-,17-,20-/m1/s1" 
A1IZZ InChIKey         InChI                1.06  YGTUYBSXPYTNNM-WVSUBDOOSA-N                                                                                                                                                                                                              
A1IZZ SMILES_CANONICAL CACTVS               3.385 "CCCN(Cc1ccccc1)c2nc(Cl)nc3n(cnc23)[C@@H]4O[C@H](CO[P](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]4O"                                                                                                                                              
A1IZZ SMILES           CACTVS               3.385 "CCCN(Cc1ccccc1)c2nc(Cl)nc3n(cnc23)[CH]4O[CH](CO[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]4O"                                                                                                                                                    
A1IZZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCN(Cc1ccccc1)c2c3c(nc(n2)Cl)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(CP(=O)(O)O)O)O)O"                                                                                                                                              
A1IZZ SMILES           "OpenEye OEToolkits" 2.0.7 "CCCN(Cc1ccccc1)c2c3c(nc(n2)Cl)n(cn3)C4C(C(C(O4)COP(=O)(CP(=O)(O)O)O)O)O"                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           A1IZZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-[(phenylmethyl)-propyl-amino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IZZ "Create component" 2025-01-28 PDBE 
A1IZZ "Initial release"  2025-06-11 RCSB 
# 
