0.041701 0.000000 0.000000 0.000000 0.024528 0.000000 0.000000 0.000000 0.022302 0.00000 0.00000 0.00000 Ban, C. Ramakrishnan, B. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 23.980 40.770 44.840 C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C10 H26 N4 202.340 SPERMINE non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C N 14 N N N 15 N C N 16 N O N 17 N N N 18 N C N 19 N N N 20 N C N 21 N C N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N O N 37 N P N 38 N O N 39 N O N 40 N O N 41 N C N 42 R C N 43 N O N 44 S C N 45 N O N 46 N C N 47 R C N 48 N N N 49 N C N 50 N O N 51 N N N 52 N C N 53 N N N 54 N C N 55 N C N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N O N 71 N P N 72 N O N 73 N O N 74 N O N 75 N C N 76 R C N 77 N O N 78 S C N 79 N O N 80 N C N 81 R C Y 82 N N Y 83 N C Y 84 N N Y 85 N C N 86 N C N 87 N O N 88 N N N 89 N C N 90 N N N 91 N N Y 92 N C N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N O N 108 N P N 109 N O N 110 N O N 111 N O N 112 N C N 113 R C N 114 N O N 115 S C N 116 N O N 117 R C N 118 N O N 119 R C Y 120 N N Y 121 N C Y 122 N N Y 123 N C N 124 N C N 125 N O N 126 N N N 127 N C N 128 N N N 129 N N Y 130 N C N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N N N 149 N C N 150 N C N 151 N C N 152 N N N 153 N C N 154 N C N 155 N C N 156 N C N 157 N N N 158 N C N 159 N C N 160 N C N 161 N N N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N doub N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N doub N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing Y 95 N sing Y 96 N sing Y 97 N doub N 98 N sing Y 99 N sing N 100 N sing Y 101 N doub N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing Y 135 N sing Y 136 N sing Y 137 N doub N 138 N sing Y 139 N sing N 140 N sing Y 141 N doub N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 22 5466 5476 10.1093/nar/22.24.5466 7816639 Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairing. 1994 10.2210/pdb100d/pdb pdb_0000100d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 263.00 1 AREA DETECTOR SIEMENS-NICOLET x-ray 1 1.0 ROTATING ANODE MACSCIENCE 3078.980 DNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3') 2 syn polymer 202.340 SPERMINE 1 syn non-polymer 18.015 water 67 nat water no no C(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)G CCGGCGCCGG A,B polydeoxyribonucleotide/polyribonucleotide hybrid n n n n n n n n n n 1.78 30.89 VAPOR DIFFUSION, HANGING DROP 7.00 pH 7.00, VAPOR DIFFUSION, HANGING DROP WATER 1 MPD 1 NA CACODYLATE 1 SPERMINE_HCL 1 WATER 2 MPD 2 3.919 1 19 A 1 B 20 -0.903 A_C1:G20_B 1 -8.782 0.068 0.037 -0.095 4.832 1 19 A 2 B 19 -1.893 A_DC2:DG19_B 2 -9.564 -0.021 -0.062 -0.169 2.657 1 19 A 3 B 18 1.384 A_DG3:DC18_B 3 -10.586 -0.348 -0.041 -0.155 -2.069 1 19 A 4 B 17 0.439 A_DG4:DC17_B 4 -10.899 -0.240 0.090 -0.199 3.577 1 19 A 5 B 16 -0.990 A_DC5:DG16_B 5 -12.554 0.378 0.399 -0.309 -1.641 1 19 A 6 B 15 0.002 A_DG6:DC15_B 6 -16.837 -0.161 0.030 0.050 2.693 1 19 A 7 B 14 0.662 A_DC7:DG14_B 7 -7.278 0.418 -0.101 -0.258 2.563 1 19 A 8 B 13 2.313 A_DC8:DG13_B 8 -6.749 0.529 -0.142 -0.125 -3.824 1 19 A 9 B 12 0.304 A_DG9:DC12_B 9 -2.749 -0.089 -0.088 -0.141 -0.154 1 19 A 10 B 11 -3.321 A_G10:C11_B 10 -5.956 -0.264 -0.028 -0.410 2.945 34.638 A A 1 2 11.038 B B 20 19 3.311 6.534 0.040 -1.686 AA_C1DC2:DG19G20_BB 1 -0.715 1.208 34.027 -3.803 -0.173 2.688 29.679 A A 2 3 16.624 B B 19 18 3.309 8.403 0.000 -1.769 AA_DC2DG3:DC18DG19_BB 2 -0.726 1.437 28.481 -5.108 -0.143 3.071 38.092 A A 3 4 15.011 B B 18 17 3.251 9.618 -1.609 -1.437 AA_DG3DG4:DC17DC18_BB 3 -8.538 13.325 35.932 -3.417 1.386 2.926 32.079 A A 4 5 12.940 B B 17 16 3.240 7.094 0.941 -0.969 AA_DG4DC5:DG16DC17_BB 4 -0.966 1.763 31.290 -2.972 -1.869 1.858 35.693 A A 5 6 31.845 B B 16 15 3.156 18.609 -0.884 -1.643 AA_DC5DG6:DC15DG16_BB 5 0.897 -1.535 30.581 -4.919 1.549 3.087 35.016 A A 6 7 10.004 B B 15 14 3.257 5.983 0.957 -1.199 AA_DG6DC7:DG14DC15_BB 6 3.304 -5.525 34.363 -2.875 -1.104 3.024 28.519 A A 7 8 9.380 B B 14 13 3.362 4.601 0.507 -1.915 AA_DC7DC8:DG13DG14_BB 7 0.387 -0.790 28.150 -4.919 -0.943 3.388 23.847 A A 8 9 6.493 B B 13 12 3.651 2.677 -0.715 -2.331 AA_DC8DG9:DC12DG13_BB 8 -0.639 1.549 23.690 -6.586 1.504 3.253 30.221 A A 9 10 4.033 B B 12 11 3.408 2.100 -0.253 -1.970 AA_DG9G10:C11DC12_BB 9 1.317 -2.528 30.122 -4.213 0.758 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1995-03-31 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-11-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1994-12-05 REL REL SPM SPERMINE HOH water SPM 21 2 SPM SPM 21 A HOH 25 3 HOH HOH 25 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 34 3 HOH HOH 34 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 43 3 HOH HOH 43 A HOH 44 3 HOH HOH 44 A HOH 46 3 HOH HOH 46 A HOH 50 3 HOH HOH 50 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 56 3 HOH HOH 56 A HOH 58 3 HOH HOH 58 A HOH 60 3 HOH HOH 60 A HOH 62 3 HOH HOH 62 A HOH 63 3 HOH HOH 63 A HOH 64 3 HOH HOH 64 A HOH 66 3 HOH HOH 66 A HOH 67 3 HOH HOH 67 A HOH 68 3 HOH HOH 68 A HOH 73 3 HOH HOH 73 A HOH 74 3 HOH HOH 74 A HOH 75 3 HOH HOH 75 A HOH 80 3 HOH HOH 80 A HOH 81 3 HOH HOH 81 A HOH 82 3 HOH HOH 82 A HOH 83 3 HOH HOH 83 A HOH 84 3 HOH HOH 84 A HOH 86 3 HOH HOH 86 A HOH 87 3 HOH HOH 87 A HOH 22 3 HOH HOH 22 B HOH 23 3 HOH HOH 23 B HOH 24 3 HOH HOH 24 B HOH 26 3 HOH HOH 26 B HOH 27 3 HOH HOH 27 B HOH 33 3 HOH HOH 33 B HOH 35 3 HOH HOH 35 B HOH 38 3 HOH HOH 38 B HOH 45 3 HOH HOH 45 B HOH 47 3 HOH HOH 47 B HOH 48 3 HOH HOH 48 B HOH 49 3 HOH HOH 49 B HOH 51 3 HOH HOH 51 B HOH 52 3 HOH HOH 52 B HOH 53 3 HOH HOH 53 B HOH 57 3 HOH HOH 57 B HOH 59 3 HOH HOH 59 B HOH 61 3 HOH HOH 61 B HOH 65 3 HOH HOH 65 B HOH 69 3 HOH HOH 69 B HOH 70 3 HOH HOH 70 B HOH 71 3 HOH HOH 71 B HOH 72 3 HOH HOH 72 B HOH 76 3 HOH HOH 76 B HOH 77 3 HOH HOH 77 B HOH 78 3 HOH HOH 78 B HOH 79 3 HOH HOH 79 B HOH 85 3 HOH HOH 85 B HOH 88 3 HOH HOH 88 B C 1 n 1 C 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 7 n 7 DC 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A G 10 n 10 G 10 A C 11 n 1 C 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B G 14 n 4 DG 14 B C 15 n 5 DC 15 B G 16 n 6 DG 16 B C 17 n 7 DC 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B G 20 n 10 G 20 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A C 1 0.067 SIDE CHAIN 1 A DG 3 0.099 SIDE CHAIN 1 A DG 4 0.081 SIDE CHAIN 1 A DG 6 0.066 SIDE CHAIN 1 B C 11 0.073 SIDE CHAIN 1 B DG 14 0.093 SIDE CHAIN 1 B DC 15 0.080 SIDE CHAIN 1 17.02 1.90 104.00 121.02 A A A O3' P O5' C DC DC 1 2 2 Y 1 -4.21 0.70 102.20 97.99 A A A C4' C3' C2' DC DC DC 2 2 2 N 1 3.15 0.30 108.30 111.45 A A A O4' C1' N1 DC DC DC 2 2 2 N 1 3.98 0.60 118.90 122.88 A A A N1 C2 O2 DC DC DC 2 2 2 N 1 25.62 1.90 104.00 129.62 A A A O3' P O5' DC DG DG 2 3 3 Y 1 -4.96 0.70 102.20 97.24 A A A C4' C3' C2' DG DG DG 3 3 3 N 1 6.86 0.30 108.30 115.16 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 26.22 1.90 104.00 130.22 A A A O3' P O5' DG DC DC 4 5 5 Y 1 -16.37 2.20 105.20 88.83 A A A O3' P OP1 DG DC DC 4 5 5 Y 1 2.21 0.30 108.30 110.51 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 7.66 1.10 110.50 118.16 A A A O3' P OP2 DC DG DG 5 6 6 Y 1 -5.11 0.70 102.20 97.09 A A A C4' C3' C2' DG DG DG 6 6 6 N 1 6.80 0.30 108.30 115.10 A A A O4' C1' N1 DC DC DC 7 7 7 N 1 -7.10 0.70 102.20 95.10 A A A C4' C3' C2' DC DC DC 8 8 8 N 1 2.55 0.30 108.30 110.85 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 12.70 1.10 110.50 123.20 A A A O3' P OP2 DC DG DG 8 9 9 Y 1 -13.39 2.20 105.20 91.81 A A A O3' P OP1 DC DG DG 8 9 9 Y 1 -2.41 0.40 104.50 102.09 A A A O4' C4' C3' DG DG DG 9 9 9 N 1 -6.51 0.70 102.20 95.69 A A A C4' C3' C2' DG DG DG 9 9 9 N 1 -6.55 0.80 105.90 99.35 A A A O4' C1' C2' DG DG DG 9 9 9 N 1 5.59 0.30 108.30 113.89 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 -3.00 0.40 106.40 103.40 A A A C8 N9 C4 DG DG DG 9 9 9 N 1 -18.51 1.90 104.00 85.49 A A A O3' P O5' DG G G 9 10 10 Y 1 28.40 1.10 110.50 138.90 A A A O3' P OP2 DG G G 9 10 10 Y 1 -16.46 2.20 105.20 88.74 A A A O3' P OP1 DG G G 9 10 10 Y 1 22.97 1.10 110.50 133.47 B B B O3' P OP2 C DC DC 11 12 12 Y 1 -20.09 2.20 105.20 85.11 B B B O3' P OP1 C DC DC 11 12 12 Y 1 4.49 0.30 108.30 112.79 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 4.43 0.60 118.90 123.33 B B B N1 C2 O2 DC DC DC 12 12 12 N 1 17.89 1.90 104.00 121.89 B B B O3' P O5' DC DG DG 12 13 13 Y 1 1.98 0.30 108.30 110.28 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 6.80 1.10 110.50 117.30 B B B O3' P OP2 DG DG DG 13 14 14 Y 1 -4.67 0.70 102.20 97.53 B B B C4' C3' C2' DG DG DG 14 14 14 N 1 10.28 1.10 110.50 120.78 B B B O3' P OP2 DG DC DC 14 15 15 Y 1 4.25 0.30 108.30 112.55 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 3.97 0.60 118.90 122.87 B B B N1 C2 O2 DC DC DC 15 15 15 N 1 -8.84 1.20 119.70 110.86 B B B C3' O3' P DC DC DG 15 15 16 Y 1 31.42 1.90 104.00 135.42 B B B O3' P O5' DC DG DG 15 16 16 Y 1 -18.43 2.20 105.20 86.77 B B B O3' P OP1 DC DG DG 15 16 16 Y 1 -8.04 0.70 102.20 94.16 B B B C4' C3' C2' DG DG DG 16 16 16 N 1 -23.73 2.20 105.20 81.47 B B B O3' P OP1 DG DC DC 16 17 17 Y 1 4.75 0.30 108.30 113.05 B B B O4' C1' N1 DC DC DC 17 17 17 N 1 12.05 1.10 110.50 122.55 B B B O3' P OP2 DC DC DC 17 18 18 Y 1 4.52 0.60 118.90 123.42 B B B N1 C2 O2 DC DC DC 18 18 18 N 1 -18.54 2.20 105.20 86.66 B B B O3' P OP1 DC DG DG 18 19 19 Y 1 -2.50 0.40 104.50 102.00 B B B O4' C4' C3' DG DG DG 19 19 19 N 1 B B P O5' DC DC 12 12 0.067 0.010 1.593 1.660 N 1 B B N7 C8 DG DG 19 19 -0.037 0.006 1.305 1.268 N 0.1450000 0.1450000 1.900 8.000 2314 1 1.000 TR isotropic TR isotropic 1.900 8.000 67 489 14 408 0 0.015 3.80 fix fix 1.900 100D 9305 2365 1 refinement X-PLOR CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING 1 N N 1 N N 2 N N 3 N N 3 N N hydrog WATSON-CRICK A C 1 A N3 C 1 1_555 B G 20 B N1 G 10 1_555 hydrog WATSON-CRICK A C 1 A N4 C 1 1_555 B G 20 B O6 G 10 1_555 hydrog WATSON-CRICK A C 1 A O2 C 1 1_555 B G 20 B N2 G 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 17 B N3 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 17 B O2 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 17 B N4 DC 7 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 16 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 16 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 16 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 15 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 15 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 15 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 14 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 14 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 14 B N2 DG 4 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A G 10 A N1 G 10 1_555 B C 11 B N3 C 1 1_555 hydrog WATSON-CRICK A G 10 A N2 G 10 1_555 B C 11 B O2 C 1 1_555 hydrog WATSON-CRICK A G 10 A O6 G 10 1_555 B C 11 B N4 C 1 1_555 DNA-RNA HYBRID A-DNA/RNA, DOUBLE HELIX, DNA-RNA HYBRID 100D PDB 1 100D 1 10 100D 1 10 100D A 1 1 10 11 20 100D 11 20 100D B 1 1 10 BINDING SITE FOR RESIDUE SPM A 21 A SPM 21 Software 13 A DC 5 A DC 5 13 1_555 A DG 6 A DG 6 13 1_555 A DG 9 A DG 9 13 3_655 A HOH 29 D HOH 13 3_655 A HOH 46 D HOH 13 2_555 A HOH 56 D HOH 13 1_555 A HOH 87 D HOH 13 1_555 B DG 13 B DG 3 13 2_555 B DG 14 B DG 4 13 2_555 B DG 19 B DG 9 13 1_655 B G 20 B G 10 13 1_655 B HOH 33 E HOH 13 2_555 B HOH 52 E HOH 13 2_555 19 P 21 21 21