0.041701
0.000000
0.000000
0.000000
0.024528
0.000000
0.000000
0.000000
0.022302
0.00000
0.00000
0.00000
Ban, C.
Ramakrishnan, B.
Sundaralingam, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
23.980
40.770
44.840
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
C10 H26 N4
202.340
SPERMINE
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
N
14
N
N
N
15
N
C
N
16
N
O
N
17
N
N
N
18
N
C
N
19
N
N
N
20
N
C
N
21
N
C
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
O
N
37
N
P
N
38
N
O
N
39
N
O
N
40
N
O
N
41
N
C
N
42
R
C
N
43
N
O
N
44
S
C
N
45
N
O
N
46
N
C
N
47
R
C
N
48
N
N
N
49
N
C
N
50
N
O
N
51
N
N
N
52
N
C
N
53
N
N
N
54
N
C
N
55
N
C
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
O
N
71
N
P
N
72
N
O
N
73
N
O
N
74
N
O
N
75
N
C
N
76
R
C
N
77
N
O
N
78
S
C
N
79
N
O
N
80
N
C
N
81
R
C
Y
82
N
N
Y
83
N
C
Y
84
N
N
Y
85
N
C
N
86
N
C
N
87
N
O
N
88
N
N
N
89
N
C
N
90
N
N
N
91
N
N
Y
92
N
C
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
O
N
108
N
P
N
109
N
O
N
110
N
O
N
111
N
O
N
112
N
C
N
113
R
C
N
114
N
O
N
115
S
C
N
116
N
O
N
117
R
C
N
118
N
O
N
119
R
C
Y
120
N
N
Y
121
N
C
Y
122
N
N
Y
123
N
C
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
N
N
129
N
N
Y
130
N
C
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
N
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
N
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
N
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
N
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
Y
95
N
sing
Y
96
N
sing
Y
97
N
doub
N
98
N
sing
Y
99
N
sing
N
100
N
sing
Y
101
N
doub
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
Y
135
N
sing
Y
136
N
sing
Y
137
N
doub
N
138
N
sing
Y
139
N
sing
N
140
N
sing
Y
141
N
doub
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
22
5466
5476
10.1093/nar/22.24.5466
7816639
Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairing.
1994
10.2210/pdb100d/pdb
pdb_0000100d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
263.00
1
AREA DETECTOR
SIEMENS-NICOLET
x-ray
1
1.0
ROTATING ANODE
MACSCIENCE
3078.980
DNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3')
2
syn
polymer
202.340
SPERMINE
1
syn
non-polymer
18.015
water
67
nat
water
no
no
C(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)G
CCGGCGCCGG
A,B
polydeoxyribonucleotide/polyribonucleotide hybrid
n
n
n
n
n
n
n
n
n
n
1.78
30.89
VAPOR DIFFUSION, HANGING DROP
7.00
pH 7.00, VAPOR DIFFUSION, HANGING DROP
WATER
1
MPD
1
NA CACODYLATE
1
SPERMINE_HCL
1
WATER
2
MPD
2
3.919
1
19
A
1
B
20
-0.903
A_C1:G20_B
1
-8.782
0.068
0.037
-0.095
4.832
1
19
A
2
B
19
-1.893
A_DC2:DG19_B
2
-9.564
-0.021
-0.062
-0.169
2.657
1
19
A
3
B
18
1.384
A_DG3:DC18_B
3
-10.586
-0.348
-0.041
-0.155
-2.069
1
19
A
4
B
17
0.439
A_DG4:DC17_B
4
-10.899
-0.240
0.090
-0.199
3.577
1
19
A
5
B
16
-0.990
A_DC5:DG16_B
5
-12.554
0.378
0.399
-0.309
-1.641
1
19
A
6
B
15
0.002
A_DG6:DC15_B
6
-16.837
-0.161
0.030
0.050
2.693
1
19
A
7
B
14
0.662
A_DC7:DG14_B
7
-7.278
0.418
-0.101
-0.258
2.563
1
19
A
8
B
13
2.313
A_DC8:DG13_B
8
-6.749
0.529
-0.142
-0.125
-3.824
1
19
A
9
B
12
0.304
A_DG9:DC12_B
9
-2.749
-0.089
-0.088
-0.141
-0.154
1
19
A
10
B
11
-3.321
A_G10:C11_B
10
-5.956
-0.264
-0.028
-0.410
2.945
34.638
A
A
1
2
11.038
B
B
20
19
3.311
6.534
0.040
-1.686
AA_C1DC2:DG19G20_BB
1
-0.715
1.208
34.027
-3.803
-0.173
2.688
29.679
A
A
2
3
16.624
B
B
19
18
3.309
8.403
0.000
-1.769
AA_DC2DG3:DC18DG19_BB
2
-0.726
1.437
28.481
-5.108
-0.143
3.071
38.092
A
A
3
4
15.011
B
B
18
17
3.251
9.618
-1.609
-1.437
AA_DG3DG4:DC17DC18_BB
3
-8.538
13.325
35.932
-3.417
1.386
2.926
32.079
A
A
4
5
12.940
B
B
17
16
3.240
7.094
0.941
-0.969
AA_DG4DC5:DG16DC17_BB
4
-0.966
1.763
31.290
-2.972
-1.869
1.858
35.693
A
A
5
6
31.845
B
B
16
15
3.156
18.609
-0.884
-1.643
AA_DC5DG6:DC15DG16_BB
5
0.897
-1.535
30.581
-4.919
1.549
3.087
35.016
A
A
6
7
10.004
B
B
15
14
3.257
5.983
0.957
-1.199
AA_DG6DC7:DG14DC15_BB
6
3.304
-5.525
34.363
-2.875
-1.104
3.024
28.519
A
A
7
8
9.380
B
B
14
13
3.362
4.601
0.507
-1.915
AA_DC7DC8:DG13DG14_BB
7
0.387
-0.790
28.150
-4.919
-0.943
3.388
23.847
A
A
8
9
6.493
B
B
13
12
3.651
2.677
-0.715
-2.331
AA_DC8DG9:DC12DG13_BB
8
-0.639
1.549
23.690
-6.586
1.504
3.253
30.221
A
A
9
10
4.033
B
B
12
11
3.408
2.100
-0.253
-1.970
AA_DG9G10:C11DC12_BB
9
1.317
-2.528
30.122
-4.213
0.758
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1995-03-31
1
1
2008-05-22
1
2
2011-07-13
1
3
2023-11-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1994-12-05
REL
REL
SPM
SPERMINE
HOH
water
SPM
21
2
SPM
SPM
21
A
HOH
25
3
HOH
HOH
25
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
34
3
HOH
HOH
34
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
HOH
46
3
HOH
HOH
46
A
HOH
50
3
HOH
HOH
50
A
HOH
54
3
HOH
HOH
54
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
58
3
HOH
HOH
58
A
HOH
60
3
HOH
HOH
60
A
HOH
62
3
HOH
HOH
62
A
HOH
63
3
HOH
HOH
63
A
HOH
64
3
HOH
HOH
64
A
HOH
66
3
HOH
HOH
66
A
HOH
67
3
HOH
HOH
67
A
HOH
68
3
HOH
HOH
68
A
HOH
73
3
HOH
HOH
73
A
HOH
74
3
HOH
HOH
74
A
HOH
75
3
HOH
HOH
75
A
HOH
80
3
HOH
HOH
80
A
HOH
81
3
HOH
HOH
81
A
HOH
82
3
HOH
HOH
82
A
HOH
83
3
HOH
HOH
83
A
HOH
84
3
HOH
HOH
84
A
HOH
86
3
HOH
HOH
86
A
HOH
87
3
HOH
HOH
87
A
HOH
22
3
HOH
HOH
22
B
HOH
23
3
HOH
HOH
23
B
HOH
24
3
HOH
HOH
24
B
HOH
26
3
HOH
HOH
26
B
HOH
27
3
HOH
HOH
27
B
HOH
33
3
HOH
HOH
33
B
HOH
35
3
HOH
HOH
35
B
HOH
38
3
HOH
HOH
38
B
HOH
45
3
HOH
HOH
45
B
HOH
47
3
HOH
HOH
47
B
HOH
48
3
HOH
HOH
48
B
HOH
49
3
HOH
HOH
49
B
HOH
51
3
HOH
HOH
51
B
HOH
52
3
HOH
HOH
52
B
HOH
53
3
HOH
HOH
53
B
HOH
57
3
HOH
HOH
57
B
HOH
59
3
HOH
HOH
59
B
HOH
61
3
HOH
HOH
61
B
HOH
65
3
HOH
HOH
65
B
HOH
69
3
HOH
HOH
69
B
HOH
70
3
HOH
HOH
70
B
HOH
71
3
HOH
HOH
71
B
HOH
72
3
HOH
HOH
72
B
HOH
76
3
HOH
HOH
76
B
HOH
77
3
HOH
HOH
77
B
HOH
78
3
HOH
HOH
78
B
HOH
79
3
HOH
HOH
79
B
HOH
85
3
HOH
HOH
85
B
HOH
88
3
HOH
HOH
88
B
C
1
n
1
C
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
C
7
n
7
DC
7
A
C
8
n
8
DC
8
A
G
9
n
9
DG
9
A
G
10
n
10
G
10
A
C
11
n
1
C
11
B
C
12
n
2
DC
12
B
G
13
n
3
DG
13
B
G
14
n
4
DG
14
B
C
15
n
5
DC
15
B
G
16
n
6
DG
16
B
C
17
n
7
DC
17
B
C
18
n
8
DC
18
B
G
19
n
9
DG
19
B
G
20
n
10
G
20
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C
1
0.067
SIDE CHAIN
1
A
DG
3
0.099
SIDE CHAIN
1
A
DG
4
0.081
SIDE CHAIN
1
A
DG
6
0.066
SIDE CHAIN
1
B
C
11
0.073
SIDE CHAIN
1
B
DG
14
0.093
SIDE CHAIN
1
B
DC
15
0.080
SIDE CHAIN
1
17.02
1.90
104.00
121.02
A
A
A
O3'
P
O5'
C
DC
DC
1
2
2
Y
1
-4.21
0.70
102.20
97.99
A
A
A
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
1
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
3.98
0.60
118.90
122.88
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
1
25.62
1.90
104.00
129.62
A
A
A
O3'
P
O5'
DC
DG
DG
2
3
3
Y
1
-4.96
0.70
102.20
97.24
A
A
A
C4'
C3'
C2'
DG
DG
DG
3
3
3
N
1
6.86
0.30
108.30
115.16
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
26.22
1.90
104.00
130.22
A
A
A
O3'
P
O5'
DG
DC
DC
4
5
5
Y
1
-16.37
2.20
105.20
88.83
A
A
A
O3'
P
OP1
DG
DC
DC
4
5
5
Y
1
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
7.66
1.10
110.50
118.16
A
A
A
O3'
P
OP2
DC
DG
DG
5
6
6
Y
1
-5.11
0.70
102.20
97.09
A
A
A
C4'
C3'
C2'
DG
DG
DG
6
6
6
N
1
6.80
0.30
108.30
115.10
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
-7.10
0.70
102.20
95.10
A
A
A
C4'
C3'
C2'
DC
DC
DC
8
8
8
N
1
2.55
0.30
108.30
110.85
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
12.70
1.10
110.50
123.20
A
A
A
O3'
P
OP2
DC
DG
DG
8
9
9
Y
1
-13.39
2.20
105.20
91.81
A
A
A
O3'
P
OP1
DC
DG
DG
8
9
9
Y
1
-2.41
0.40
104.50
102.09
A
A
A
O4'
C4'
C3'
DG
DG
DG
9
9
9
N
1
-6.51
0.70
102.20
95.69
A
A
A
C4'
C3'
C2'
DG
DG
DG
9
9
9
N
1
-6.55
0.80
105.90
99.35
A
A
A
O4'
C1'
C2'
DG
DG
DG
9
9
9
N
1
5.59
0.30
108.30
113.89
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
-3.00
0.40
106.40
103.40
A
A
A
C8
N9
C4
DG
DG
DG
9
9
9
N
1
-18.51
1.90
104.00
85.49
A
A
A
O3'
P
O5'
DG
G
G
9
10
10
Y
1
28.40
1.10
110.50
138.90
A
A
A
O3'
P
OP2
DG
G
G
9
10
10
Y
1
-16.46
2.20
105.20
88.74
A
A
A
O3'
P
OP1
DG
G
G
9
10
10
Y
1
22.97
1.10
110.50
133.47
B
B
B
O3'
P
OP2
C
DC
DC
11
12
12
Y
1
-20.09
2.20
105.20
85.11
B
B
B
O3'
P
OP1
C
DC
DC
11
12
12
Y
1
4.49
0.30
108.30
112.79
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
1
4.43
0.60
118.90
123.33
B
B
B
N1
C2
O2
DC
DC
DC
12
12
12
N
1
17.89
1.90
104.00
121.89
B
B
B
O3'
P
O5'
DC
DG
DG
12
13
13
Y
1
1.98
0.30
108.30
110.28
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
6.80
1.10
110.50
117.30
B
B
B
O3'
P
OP2
DG
DG
DG
13
14
14
Y
1
-4.67
0.70
102.20
97.53
B
B
B
C4'
C3'
C2'
DG
DG
DG
14
14
14
N
1
10.28
1.10
110.50
120.78
B
B
B
O3'
P
OP2
DG
DC
DC
14
15
15
Y
1
4.25
0.30
108.30
112.55
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
3.97
0.60
118.90
122.87
B
B
B
N1
C2
O2
DC
DC
DC
15
15
15
N
1
-8.84
1.20
119.70
110.86
B
B
B
C3'
O3'
P
DC
DC
DG
15
15
16
Y
1
31.42
1.90
104.00
135.42
B
B
B
O3'
P
O5'
DC
DG
DG
15
16
16
Y
1
-18.43
2.20
105.20
86.77
B
B
B
O3'
P
OP1
DC
DG
DG
15
16
16
Y
1
-8.04
0.70
102.20
94.16
B
B
B
C4'
C3'
C2'
DG
DG
DG
16
16
16
N
1
-23.73
2.20
105.20
81.47
B
B
B
O3'
P
OP1
DG
DC
DC
16
17
17
Y
1
4.75
0.30
108.30
113.05
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
1
12.05
1.10
110.50
122.55
B
B
B
O3'
P
OP2
DC
DC
DC
17
18
18
Y
1
4.52
0.60
118.90
123.42
B
B
B
N1
C2
O2
DC
DC
DC
18
18
18
N
1
-18.54
2.20
105.20
86.66
B
B
B
O3'
P
OP1
DC
DG
DG
18
19
19
Y
1
-2.50
0.40
104.50
102.00
B
B
B
O4'
C4'
C3'
DG
DG
DG
19
19
19
N
1
B
B
P
O5'
DC
DC
12
12
0.067
0.010
1.593
1.660
N
1
B
B
N7
C8
DG
DG
19
19
-0.037
0.006
1.305
1.268
N
0.1450000
0.1450000
1.900
8.000
2314
1
1.000
TR
isotropic
TR
isotropic
1.900
8.000
67
489
14
408
0
0.015
3.80
fix
fix
1.900
100D
9305
2365
1
refinement
X-PLOR
CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
hydrog
WATSON-CRICK
A
C
1
A
N3
C
1
1_555
B
G
20
B
N1
G
10
1_555
hydrog
WATSON-CRICK
A
C
1
A
N4
C
1
1_555
B
G
20
B
O6
G
10
1_555
hydrog
WATSON-CRICK
A
C
1
A
O2
C
1
1_555
B
G
20
B
N2
G
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
19
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
19
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
19
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
18
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
18
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
18
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
17
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
17
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
17
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
16
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
16
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
16
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
15
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
15
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
15
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
14
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
14
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
14
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
13
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
13
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
13
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
12
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
12
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
12
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
G
10
A
N1
G
10
1_555
B
C
11
B
N3
C
1
1_555
hydrog
WATSON-CRICK
A
G
10
A
N2
G
10
1_555
B
C
11
B
O2
C
1
1_555
hydrog
WATSON-CRICK
A
G
10
A
O6
G
10
1_555
B
C
11
B
N4
C
1
1_555
DNA-RNA HYBRID
A-DNA/RNA, DOUBLE HELIX, DNA-RNA HYBRID
100D
PDB
1
100D
1
10
100D
1
10
100D
A
1
1
10
11
20
100D
11
20
100D
B
1
1
10
BINDING SITE FOR RESIDUE SPM A 21
A
SPM
21
Software
13
A
DC
5
A
DC
5
13
1_555
A
DG
6
A
DG
6
13
1_555
A
DG
9
A
DG
9
13
3_655
A
HOH
29
D
HOH
13
3_655
A
HOH
46
D
HOH
13
2_555
A
HOH
56
D
HOH
13
1_555
A
HOH
87
D
HOH
13
1_555
B
DG
13
B
DG
3
13
2_555
B
DG
14
B
DG
4
13
2_555
B
DG
19
B
DG
9
13
1_655
B
G
20
B
G
10
13
1_655
B
HOH
33
E
HOH
13
2_555
B
HOH
52
E
HOH
13
2_555
19
P 21 21 21