0.010014
0.005781
0.000000
0.000000
0.011563
0.000000
0.000000
0.000000
0.003075
0.00000
0.00000
0.00000
Sheikhnejad, G.
Brank, A.
Christman, J.K.
Goddard, A.
Alvarez, E.
Ford Junior, H.
Marquez, V.E.
Marasco, C.J.
Sufrin, J.R.
O'Gara, M.
Cheng, X.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
99.860
99.860
325.200
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C8 H13 N4 O7 P
308.185
n
5-AZA-CYTIDINE-5'MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C14 H20 N6 O5 S
384.411
n
S-ADENOSYL-L-HOMOCYSTEINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
N
N
72
S
C
N
73
N
C
N
74
N
O
N
75
N
C
N
76
N
O
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
S
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
N
N
94
N
N
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
N
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
S
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
Y
174
N
C
N
175
N
N
Y
176
N
N
Y
177
N
C
Y
178
N
N
Y
179
N
C
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
O
N
195
N
P
N
196
N
O
N
197
N
O
N
198
N
O
N
199
N
C
N
200
R
C
N
201
N
O
N
202
S
C
N
203
N
O
N
204
N
C
N
205
R
C
N
206
N
N
N
207
N
C
N
208
N
O
N
209
N
N
N
210
N
C
N
211
N
N
N
212
N
C
N
213
N
C
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
O
N
229
N
P
N
230
N
O
N
231
N
O
N
232
N
O
N
233
N
C
N
234
R
C
N
235
N
O
N
236
S
C
N
237
N
O
N
238
N
C
N
239
R
C
Y
240
N
N
Y
241
N
C
Y
242
N
N
Y
243
N
C
N
244
N
C
N
245
N
O
N
246
N
N
N
247
N
C
N
248
N
N
N
249
N
N
Y
250
N
C
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
O
N
266
N
P
N
267
N
O
N
268
N
O
N
269
N
O
N
270
N
C
N
271
R
C
N
272
N
O
N
273
S
C
N
274
N
O
N
275
N
C
N
276
R
C
N
277
N
N
N
278
N
C
N
279
N
O
N
280
N
N
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
O
N
309
N
N
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
O
N
329
N
O
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
N
C
N
342
N
C
N
343
N
O
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
N
Y
357
N
C
Y
358
N
C
Y
359
N
N
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
S
C
N
379
N
C
N
380
N
C
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
C
N
402
N
C
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
C
N
426
N
N
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
C
N
449
N
S
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
N
474
N
O
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
N
N
487
S
C
N
488
N
C
N
489
N
O
N
490
N
C
N
491
N
C
N
492
N
C
N
493
N
O
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
N
N
504
S
C
N
505
N
C
N
506
N
C
N
507
N
S
N
508
N
C
N
509
N
O
N
510
N
O
N
511
N
C
N
512
S
C
N
513
N
O
N
514
S
C
N
515
N
O
N
516
R
C
N
517
N
O
N
518
R
C
Y
519
N
N
Y
520
N
C
Y
521
N
N
Y
522
N
C
Y
523
N
C
N
524
N
N
Y
525
N
N
Y
526
N
C
Y
527
N
N
Y
528
N
C
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
N
N
550
S
C
N
551
N
C
N
552
N
O
N
553
N
C
N
554
N
O
N
555
N
O
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
N
N
564
S
C
N
565
N
C
N
566
N
O
N
567
R
C
N
568
N
O
N
569
N
C
N
570
N
O
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
N
N
581
S
C
N
582
N
C
N
583
N
O
N
584
N
C
Y
585
N
C
Y
586
N
C
Y
587
N
C
Y
588
N
N
Y
589
N
C
Y
590
N
C
Y
591
N
C
Y
592
N
C
Y
593
N
C
N
594
N
O
N
595
N
H
N
596
N
H
N
597
N
H
N
598
N
H
N
599
N
H
N
600
N
H
N
601
N
H
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
N
N
608
S
C
N
609
N
C
N
610
N
O
N
611
N
C
Y
612
N
C
Y
613
N
C
Y
614
N
C
Y
615
N
C
Y
616
N
C
Y
617
N
C
N
618
N
O
N
619
N
O
N
620
N
H
N
621
N
H
N
622
N
H
N
623
N
H
N
624
N
H
N
625
N
H
N
626
N
H
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
N
N
632
S
C
N
633
N
C
N
634
N
O
N
635
N
C
N
636
N
C
N
637
N
C
N
638
N
O
N
639
N
H
N
640
N
H
N
641
N
H
N
642
N
H
N
643
N
H
N
644
N
H
N
645
N
H
N
646
N
H
N
647
N
H
N
648
N
H
N
649
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
Y
178
N
sing
Y
179
N
sing
Y
180
N
doub
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
doub
N
187
N
sing
N
188
N
sing
Y
189
N
sing
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
Y
251
N
sing
Y
252
N
sing
Y
253
N
doub
N
254
N
sing
Y
255
N
sing
N
256
N
sing
Y
257
N
doub
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
sing
Y
362
N
doub
Y
363
N
doub
N
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
doub
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
Y
469
N
doub
Y
470
N
sing
Y
471
N
sing
N
472
N
sing
Y
473
N
doub
N
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
doub
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
Y
531
N
sing
Y
532
N
sing
Y
533
N
doub
N
534
N
sing
Y
535
N
sing
Y
536
N
sing
Y
537
N
doub
N
538
N
sing
Y
539
N
doub
N
540
N
sing
N
541
N
sing
Y
542
N
sing
Y
543
N
doub
N
544
N
sing
Y
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
doub
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
doub
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
doub
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
Y
586
N
doub
Y
587
N
sing
Y
588
N
sing
N
589
N
sing
Y
590
N
doub
Y
591
N
sing
Y
592
N
sing
N
593
N
sing
Y
594
N
sing
Y
595
N
doub
N
596
N
sing
Y
597
N
doub
N
598
N
sing
Y
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
doub
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
Y
614
N
doub
Y
615
N
sing
Y
616
N
sing
N
617
N
sing
Y
618
N
doub
N
619
N
sing
Y
620
N
doub
N
621
N
sing
Y
622
N
sing
N
623
N
sing
N
624
N
sing
N
625
N
sing
N
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
sing
N
631
N
sing
N
632
N
sing
N
633
N
doub
N
634
N
sing
N
635
N
sing
N
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
285
2021
2034
10.1006/jmbi.1998.2426
9925782
Mechanism of inhibition of DNA (cytosine C5)-methyltransferases by oligodeoxyribonucleotides containing 5,6-dihydro-5-azacytosine.
1999
10.2210/pdb10mh/pdb
pdb_000010mh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
95
1
IMAGE PLATE
1996-09-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.15
1.0
X12C
NSLS
1.15
SYNCHROTRON
NSLS BEAMLINE X12C
3637.395
DNA (5'-D(P*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3')
1
syn
polymer
3704.404
DNA (5'-D(P*GP*TP*CP*AP*GP*5NCP*GP*CP*AP*TP*GP*G)-3')
1
syn
polymer
37042.207
PROTEIN (CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI)
2.1.1.73
1
man
polymer
384.411
S-ADENOSYL-L-HOMOCYSTEINE
1
syn
non-polymer
18.015
water
129
nat
water
MODIFICATION METHYLASE HHAI, M.HHAI
E.C 2.1.1.73
no
yes
(DC)(DC)(DA)(DT)(DG)(5CM)(DG)(DC)(DT)(DG)(DA)(DC)
CCATGCGCTGAC
B
polydeoxyribonucleotide
no
yes
(DG)(DT)(DC)(DA)(DG)(5NC)(DG)(DC)(DA)(DT)(DG)(DG)
GTCAGCGCATGG
C
polydeoxyribonucleotide
no
no
MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP
CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP
QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER
IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS
SLNFKPY
MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP
CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP
QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER
IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS
SLNFKPY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Haemophilus
Escherichia
sample
726
Haemophilus haemolyticus
562
Escherichia coli
1
3.52
65.03
6.5
10% (W/V) PEG 8000 50 MM CALCIUM ACETATE 50 MM SODIUM CACODYLATE PH 6.5
-12.031
1
19
B
402
C
433
-5.002
B_DC402:DG433_C
1
-0.691
-0.021
0.185
-0.367
-1.120
1
19
B
403
C
432
0.673
B_DC403:DG432_C
2
-8.305
0.379
0.155
-0.400
-6.138
1
20
B
404
C
431
0.604
B_DA404:DT431_C
3
5.849
0.060
0.131
-0.253
7.986
1
20
B
405
C
430
-4.894
B_DT405:DA430_C
4
-4.182
-0.154
-0.153
0.109
7.195
1
19
B
406
C
429
-7.468
B_DG406:DC429_C
5
-4.277
0.327
-0.035
-0.365
7.538
1
19
B
407
C
428
-3.941
B_5CM407:DG428_C
6
-7.152
-0.481
-0.471
-0.242
3.175
1
19
B
409
C
426
-2.379
B_DC409:DG426_C
7
-5.454
-0.384
-0.266
0.027
1.144
1
20
B
410
C
425
-1.648
B_DT410:DA425_C
8
-1.724
-0.156
-0.010
-0.199
4.016
1
19
B
411
C
424
-1.893
B_DG411:DC424_C
9
-1.283
-0.121
-0.090
-0.352
9.576
1
20
B
412
C
423
-10.943
B_DA412:DT423_C
10
-8.778
0.544
0.231
-0.015
3.277
1
19
B
413
C
422
-0.646
B_DC413:DG422_C
11
-13.078
0.584
0.294
-0.449
3.226
36.448
B
B
402
403
6.211
C
C
433
432
3.332
3.873
-0.078
-0.663
BB_DC402DC403:DG432DG433_CC
1
3.357
-5.384
36.098
-1.601
0.594
3.356
35.336
B
B
403
404
15.268
C
C
432
431
3.521
9.166
-0.401
-0.257
BB_DC403DA404:DT431DG432_CC
2
-1.349
2.247
34.137
-1.872
0.447
3.101
28.738
B
B
404
405
-0.247
C
C
431
430
3.105
-0.123
-0.450
-0.294
BB_DA404DT405:DA430DT431_CC
3
0.291
-0.585
28.737
-0.565
0.968
3.682
39.549
B
B
405
406
-2.028
C
C
430
429
3.547
-1.367
-1.210
0.123
BB_DT405DG406:DC429DA430_CC
4
-6.148
9.122
39.064
0.360
0.985
3.838
31.650
B
B
406
407
-14.198
C
C
429
428
3.629
-7.665
1.109
-1.067
BB_DG4065CM407:DG428DC429_CC
5
1.922
-3.560
30.672
-0.314
-1.621
3.575
37.974
B
B
409
410
7.632
C
C
426
425
3.624
4.952
0.315
-0.097
BB_DC409DT410:DA425DG426_CC
6
-0.886
1.365
37.651
-0.847
-0.609
3.395
36.494
B
B
410
411
2.371
C
C
425
424
3.372
1.484
0.478
0.045
BB_DT410DG411:DC424DA425_CC
7
2.440
-3.900
36.386
-0.141
-0.413
3.421
31.357
B
B
411
412
8.368
C
C
424
423
3.475
4.502
-0.176
-0.157
BB_DG411DA412:DT423DC424_CC
8
-2.771
5.150
30.919
-1.190
-0.228
3.188
32.104
B
B
412
413
10.625
C
C
423
422
3.567
5.844
1.148
-1.688
BB_DA412DC413:DG422DT423_CC
9
-0.624
1.134
31.575
-4.146
-2.192
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
1999-02-09
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
RCSB
1998-08-10
REL
SAH
S-ADENOSYL-L-HOMOCYSTEINE
HOH
water
5MHT
PDB ENTRY 5MHT
PDB
experimental model
SAH
328
4
SAH
SAH
328
A
HOH
371
5
HOH
HOH
414
B
HOH
403
5
HOH
HOH
415
B
HOH
426
5
HOH
HOH
416
B
HOH
448
5
HOH
HOH
417
B
HOH
471
5
HOH
HOH
418
B
HOH
481
5
HOH
HOH
419
B
HOH
354
5
HOH
HOH
354
C
HOH
383
5
HOH
HOH
383
C
HOH
402
5
HOH
HOH
402
C
HOH
414
5
HOH
HOH
414
C
HOH
446
5
HOH
HOH
446
C
HOH
450
5
HOH
HOH
450
C
HOH
452
5
HOH
HOH
452
C
HOH
460
5
HOH
HOH
460
C
HOH
486
5
HOH
HOH
486
C
HOH
329
5
HOH
HOH
329
A
HOH
330
5
HOH
HOH
330
A
HOH
331
5
HOH
HOH
331
A
HOH
332
5
HOH
HOH
332
A
HOH
335
5
HOH
HOH
335
A
HOH
336
5
HOH
HOH
336
A
HOH
337
5
HOH
HOH
337
A
HOH
338
5
HOH
HOH
338
A
HOH
339
5
HOH
HOH
339
A
HOH
340
5
HOH
HOH
340
A
HOH
341
5
HOH
HOH
341
A
HOH
342
5
HOH
HOH
342
A
HOH
343
5
HOH
HOH
343
A
HOH
344
5
HOH
HOH
344
A
HOH
345
5
HOH
HOH
345
A
HOH
346
5
HOH
HOH
346
A
HOH
347
5
HOH
HOH
347
A
HOH
348
5
HOH
HOH
348
A
HOH
350
5
HOH
HOH
350
A
HOH
352
5
HOH
HOH
352
A
HOH
353
5
HOH
HOH
353
A
HOH
355
5
HOH
HOH
355
A
HOH
356
5
HOH
HOH
356
A
HOH
357
5
HOH
HOH
357
A
HOH
358
5
HOH
HOH
358
A
HOH
360
5
HOH
HOH
360
A
HOH
361
5
HOH
HOH
361
A
HOH
362
5
HOH
HOH
362
A
HOH
363
5
HOH
HOH
363
A
HOH
364
5
HOH
HOH
364
A
HOH
365
5
HOH
HOH
365
A
HOH
366
5
HOH
HOH
366
A
HOH
367
5
HOH
HOH
367
A
HOH
369
5
HOH
HOH
369
A
HOH
370
5
HOH
HOH
370
A
HOH
372
5
HOH
HOH
372
A
HOH
373
5
HOH
HOH
373
A
HOH
375
5
HOH
HOH
375
A
HOH
376
5
HOH
HOH
376
A
HOH
377
5
HOH
HOH
377
A
HOH
378
5
HOH
HOH
378
A
HOH
379
5
HOH
HOH
379
A
HOH
380
5
HOH
HOH
380
A
HOH
381
5
HOH
HOH
381
A
HOH
382
5
HOH
HOH
382
A
HOH
384
5
HOH
HOH
384
A
HOH
385
5
HOH
HOH
385
A
HOH
386
5
HOH
HOH
386
A
HOH
388
5
HOH
HOH
388
A
HOH
389
5
HOH
HOH
389
A
HOH
390
5
HOH
HOH
390
A
HOH
393
5
HOH
HOH
393
A
HOH
394
5
HOH
HOH
394
A
HOH
395
5
HOH
HOH
395
A
HOH
397
5
HOH
HOH
397
A
HOH
398
5
HOH
HOH
398
A
HOH
400
5
HOH
HOH
400
A
HOH
406
5
HOH
HOH
406
A
HOH
407
5
HOH
HOH
407
A
HOH
408
5
HOH
HOH
408
A
HOH
410
5
HOH
HOH
410
A
HOH
411
5
HOH
HOH
411
A
HOH
412
5
HOH
HOH
412
A
HOH
413
5
HOH
HOH
413
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
423
5
HOH
HOH
423
A
HOH
424
5
HOH
HOH
424
A
HOH
425
5
HOH
HOH
425
A
HOH
428
5
HOH
HOH
428
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
434
5
HOH
HOH
434
A
HOH
435
5
HOH
HOH
435
A
HOH
437
5
HOH
HOH
437
A
HOH
440
5
HOH
HOH
440
A
HOH
441
5
HOH
HOH
441
A
HOH
442
5
HOH
HOH
442
A
HOH
443
5
HOH
HOH
443
A
HOH
444
5
HOH
HOH
444
A
HOH
445
5
HOH
HOH
445
A
HOH
447
5
HOH
HOH
447
A
HOH
449
5
HOH
HOH
449
A
HOH
451
5
HOH
HOH
451
A
HOH
453
5
HOH
HOH
453
A
HOH
454
5
HOH
HOH
454
A
HOH
455
5
HOH
HOH
455
A
HOH
456
5
HOH
HOH
456
A
HOH
461
5
HOH
HOH
461
A
HOH
463
5
HOH
HOH
463
A
HOH
464
5
HOH
HOH
464
A
HOH
465
5
HOH
HOH
465
A
HOH
466
5
HOH
HOH
466
A
HOH
468
5
HOH
HOH
468
A
HOH
469
5
HOH
HOH
469
A
HOH
470
5
HOH
HOH
470
A
HOH
472
5
HOH
HOH
472
A
HOH
473
5
HOH
HOH
473
A
HOH
474
5
HOH
HOH
474
A
HOH
475
5
HOH
HOH
475
A
HOH
476
5
HOH
HOH
476
A
HOH
479
5
HOH
HOH
479
A
HOH
480
5
HOH
HOH
480
A
HOH
482
5
HOH
HOH
482
A
HOH
483
5
HOH
HOH
483
A
HOH
487
5
HOH
HOH
487
A
C
402
n
1
DC
402
B
C
403
n
2
DC
403
B
A
404
n
3
DA
404
B
T
405
n
4
DT
405
B
G
406
n
5
DG
406
B
+C
407
n
6
5CM
407
B
G
408
n
7
DG
408
B
C
409
n
8
DC
409
B
T
410
n
9
DT
410
B
G
411
n
10
DG
411
B
A
412
n
11
DA
412
B
C
413
n
12
DC
413
B
G
422
n
1
DG
422
C
T
423
n
2
DT
423
C
C
424
n
3
DC
424
C
A
425
n
4
DA
425
C
G
426
n
5
DG
426
C
5NC
427
n
6
5NC
427
C
G
428
n
7
DG
428
C
C
429
n
8
DC
429
C
A
430
n
9
DA
430
C
T
431
n
10
DT
431
C
G
432
n
11
DG
432
C
G
433
n
12
DG
433
C
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
GLU
3
n
3
GLU
3
A
ILE
4
n
4
ILE
4
A
LYS
5
n
5
LYS
5
A
ASP
6
n
6
ASP
6
A
LYS
7
n
7
LYS
7
A
GLN
8
n
8
GLN
8
A
LEU
9
n
9
LEU
9
A
THR
10
n
10
THR
10
A
GLY
11
n
11
GLY
11
A
LEU
12
n
12
LEU
12
A
ARG
13
n
13
ARG
13
A
PHE
14
n
14
PHE
14
A
ILE
15
n
15
ILE
15
A
ASP
16
n
16
ASP
16
A
LEU
17
n
17
LEU
17
A
PHE
18
n
18
PHE
18
A
ALA
19
n
19
ALA
19
A
GLY
20
n
20
GLY
20
A
LEU
21
n
21
LEU
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
PHE
24
n
24
PHE
24
A
ARG
25
n
25
ARG
25
A
LEU
26
n
26
LEU
26
A
ALA
27
n
27
ALA
27
A
LEU
28
n
28
LEU
28
A
GLU
29
n
29
GLU
29
A
SER
30
n
30
SER
30
A
CYS
31
n
31
CYS
31
A
GLY
32
n
32
GLY
32
A
ALA
33
n
33
ALA
33
A
GLU
34
n
34
GLU
34
A
CYS
35
n
35
CYS
35
A
VAL
36
n
36
VAL
36
A
TYR
37
n
37
TYR
37
A
SER
38
n
38
SER
38
A
ASN
39
n
39
ASN
39
A
GLU
40
n
40
GLU
40
A
TRP
41
n
41
TRP
41
A
ASP
42
n
42
ASP
42
A
LYS
43
n
43
LYS
43
A
TYR
44
n
44
TYR
44
A
ALA
45
n
45
ALA
45
A
GLN
46
n
46
GLN
46
A
GLU
47
n
47
GLU
47
A
VAL
48
n
48
VAL
48
A
TYR
49
n
49
TYR
49
A
GLU
50
n
50
GLU
50
A
MET
51
n
51
MET
51
A
ASN
52
n
52
ASN
52
A
PHE
53
n
53
PHE
53
A
GLY
54
n
54
GLY
54
A
GLU
55
n
55
GLU
55
A
LYS
56
n
56
LYS
56
A
PRO
57
n
57
PRO
57
A
GLU
58
n
58
GLU
58
A
GLY
59
n
59
GLY
59
A
ASP
60
n
60
ASP
60
A
ILE
61
n
61
ILE
61
A
THR
62
n
62
THR
62
A
GLN
63
n
63
GLN
63
A
VAL
64
n
64
VAL
64
A
ASN
65
n
65
ASN
65
A
GLU
66
n
66
GLU
66
A
LYS
67
n
67
LYS
67
A
THR
68
n
68
THR
68
A
ILE
69
n
69
ILE
69
A
PRO
70
n
70
PRO
70
A
ASP
71
n
71
ASP
71
A
HIS
72
n
72
HIS
72
A
ASP
73
n
73
ASP
73
A
ILE
74
n
74
ILE
74
A
LEU
75
n
75
LEU
75
A
CYS
76
n
76
CYS
76
A
ALA
77
n
77
ALA
77
A
GLY
78
n
78
GLY
78
A
PHE
79
n
79
PHE
79
A
PRO
80
n
80
PRO
80
A
CYS
81
n
81
CYS
81
A
GLN
82
n
82
GLN
82
A
ALA
83
n
83
ALA
83
A
PHE
84
n
84
PHE
84
A
SER
85
n
85
SER
85
A
ILE
86
n
86
ILE
86
A
SER
87
n
87
SER
87
A
GLY
88
n
88
GLY
88
A
LYS
89
n
89
LYS
89
A
GLN
90
n
90
GLN
90
A
LYS
91
n
91
LYS
91
A
GLY
92
n
92
GLY
92
A
PHE
93
n
93
PHE
93
A
GLU
94
n
94
GLU
94
A
ASP
95
n
95
ASP
95
A
SER
96
n
96
SER
96
A
ARG
97
n
97
ARG
97
A
GLY
98
n
98
GLY
98
A
THR
99
n
99
THR
99
A
LEU
100
n
100
LEU
100
A
PHE
101
n
101
PHE
101
A
PHE
102
n
102
PHE
102
A
ASP
103
n
103
ASP
103
A
ILE
104
n
104
ILE
104
A
ALA
105
n
105
ALA
105
A
ARG
106
n
106
ARG
106
A
ILE
107
n
107
ILE
107
A
VAL
108
n
108
VAL
108
A
ARG
109
n
109
ARG
109
A
GLU
110
n
110
GLU
110
A
LYS
111
n
111
LYS
111
A
LYS
112
n
112
LYS
112
A
PRO
113
n
113
PRO
113
A
LYS
114
n
114
LYS
114
A
VAL
115
n
115
VAL
115
A
VAL
116
n
116
VAL
116
A
PHE
117
n
117
PHE
117
A
MET
118
n
118
MET
118
A
GLU
119
n
119
GLU
119
A
ASN
120
n
120
ASN
120
A
VAL
121
n
121
VAL
121
A
LYS
122
n
122
LYS
122
A
ASN
123
n
123
ASN
123
A
PHE
124
n
124
PHE
124
A
ALA
125
n
125
ALA
125
A
SER
126
n
126
SER
126
A
HIS
127
n
127
HIS
127
A
ASP
128
n
128
ASP
128
A
ASN
129
n
129
ASN
129
A
GLY
130
n
130
GLY
130
A
ASN
131
n
131
ASN
131
A
THR
132
n
132
THR
132
A
LEU
133
n
133
LEU
133
A
GLU
134
n
134
GLU
134
A
VAL
135
n
135
VAL
135
A
VAL
136
n
136
VAL
136
A
LYS
137
n
137
LYS
137
A
ASN
138
n
138
ASN
138
A
THR
139
n
139
THR
139
A
MET
140
n
140
MET
140
A
ASN
141
n
141
ASN
141
A
GLU
142
n
142
GLU
142
A
LEU
143
n
143
LEU
143
A
ASP
144
n
144
ASP
144
A
TYR
145
n
145
TYR
145
A
SER
146
n
146
SER
146
A
PHE
147
n
147
PHE
147
A
HIS
148
n
148
HIS
148
A
ALA
149
n
149
ALA
149
A
LYS
150
n
150
LYS
150
A
VAL
151
n
151
VAL
151
A
LEU
152
n
152
LEU
152
A
ASN
153
n
153
ASN
153
A
ALA
154
n
154
ALA
154
A
LEU
155
n
155
LEU
155
A
ASP
156
n
156
ASP
156
A
TYR
157
n
157
TYR
157
A
GLY
158
n
158
GLY
158
A
ILE
159
n
159
ILE
159
A
PRO
160
n
160
PRO
160
A
GLN
161
n
161
GLN
161
A
LYS
162
n
162
LYS
162
A
ARG
163
n
163
ARG
163
A
GLU
164
n
164
GLU
164
A
ARG
165
n
165
ARG
165
A
ILE
166
n
166
ILE
166
A
TYR
167
n
167
TYR
167
A
MET
168
n
168
MET
168
A
ILE
169
n
169
ILE
169
A
CYS
170
n
170
CYS
170
A
PHE
171
n
171
PHE
171
A
ARG
172
n
172
ARG
172
A
ASN
173
n
173
ASN
173
A
ASP
174
n
174
ASP
174
A
LEU
175
n
175
LEU
175
A
ASN
176
n
176
ASN
176
A
ILE
177
n
177
ILE
177
A
GLN
178
n
178
GLN
178
A
ASN
179
n
179
ASN
179
A
PHE
180
n
180
PHE
180
A
GLN
181
n
181
GLN
181
A
PHE
182
n
182
PHE
182
A
PRO
183
n
183
PRO
183
A
LYS
184
n
184
LYS
184
A
PRO
185
n
185
PRO
185
A
PHE
186
n
186
PHE
186
A
GLU
187
n
187
GLU
187
A
LEU
188
n
188
LEU
188
A
ASN
189
n
189
ASN
189
A
THR
190
n
190
THR
190
A
PHE
191
n
191
PHE
191
A
VAL
192
n
192
VAL
192
A
LYS
193
n
193
LYS
193
A
ASP
194
n
194
ASP
194
A
LEU
195
n
195
LEU
195
A
LEU
196
n
196
LEU
196
A
LEU
197
n
197
LEU
197
A
PRO
198
n
198
PRO
198
A
ASP
199
n
199
ASP
199
A
SER
200
n
200
SER
200
A
GLU
201
n
201
GLU
201
A
VAL
202
n
202
VAL
202
A
GLU
203
n
203
GLU
203
A
HIS
204
n
204
HIS
204
A
LEU
205
n
205
LEU
205
A
VAL
206
n
206
VAL
206
A
ILE
207
n
207
ILE
207
A
ASP
208
n
208
ASP
208
A
ARG
209
n
209
ARG
209
A
LYS
210
n
210
LYS
210
A
ASP
211
n
211
ASP
211
A
LEU
212
n
212
LEU
212
A
VAL
213
n
213
VAL
213
A
MET
214
n
214
MET
214
A
THR
215
n
215
THR
215
A
ASN
216
n
216
ASN
216
A
GLN
217
n
217
GLN
217
A
GLU
218
n
218
GLU
218
A
ILE
219
n
219
ILE
219
A
GLU
220
n
220
GLU
220
A
GLN
221
n
221
GLN
221
A
THR
222
n
222
THR
222
A
THR
223
n
223
THR
223
A
PRO
224
n
224
PRO
224
A
LYS
225
n
225
LYS
225
A
THR
226
n
226
THR
226
A
VAL
227
n
227
VAL
227
A
ARG
228
n
228
ARG
228
A
LEU
229
n
229
LEU
229
A
GLY
230
n
230
GLY
230
A
ILE
231
n
231
ILE
231
A
VAL
232
n
232
VAL
232
A
GLY
233
n
233
GLY
233
A
LYS
234
n
234
LYS
234
A
GLY
235
n
235
GLY
235
A
GLY
236
n
236
GLY
236
A
GLN
237
n
237
GLN
237
A
GLY
238
n
238
GLY
238
A
GLU
239
n
239
GLU
239
A
ARG
240
n
240
ARG
240
A
ILE
241
n
241
ILE
241
A
TYR
242
n
242
TYR
242
A
SER
243
n
243
SER
243
A
THR
244
n
244
THR
244
A
ARG
245
n
245
ARG
245
A
GLY
246
n
246
GLY
246
A
ILE
247
n
247
ILE
247
A
ALA
248
n
248
ALA
248
A
ILE
249
n
249
ILE
249
A
THR
250
n
250
THR
250
A
LEU
251
n
251
LEU
251
A
SER
252
n
252
SER
252
A
ALA
253
n
253
ALA
253
A
TYR
254
n
254
TYR
254
A
GLY
255
n
255
GLY
255
A
GLY
256
n
256
GLY
256
A
GLY
257
n
257
GLY
257
A
ILE
258
n
258
ILE
258
A
PHE
259
n
259
PHE
259
A
ALA
260
n
260
ALA
260
A
LYS
261
n
261
LYS
261
A
THR
262
n
262
THR
262
A
GLY
263
n
263
GLY
263
A
GLY
264
n
264
GLY
264
A
TYR
265
n
265
TYR
265
A
LEU
266
n
266
LEU
266
A
VAL
267
n
267
VAL
267
A
ASN
268
n
268
ASN
268
A
GLY
269
n
269
GLY
269
A
LYS
270
n
270
LYS
270
A
THR
271
n
271
THR
271
A
ARG
272
n
272
ARG
272
A
LYS
273
n
273
LYS
273
A
LEU
274
n
274
LEU
274
A
HIS
275
n
275
HIS
275
A
PRO
276
n
276
PRO
276
A
ARG
277
n
277
ARG
277
A
GLU
278
n
278
GLU
278
A
CYS
279
n
279
CYS
279
A
ALA
280
n
280
ALA
280
A
ARG
281
n
281
ARG
281
A
VAL
282
n
282
VAL
282
A
MET
283
n
283
MET
283
A
GLY
284
n
284
GLY
284
A
TYR
285
n
285
TYR
285
A
PRO
286
n
286
PRO
286
A
ASP
287
n
287
ASP
287
A
SER
288
n
288
SER
288
A
TYR
289
n
289
TYR
289
A
LYS
290
n
290
LYS
290
A
VAL
291
n
291
VAL
291
A
HIS
292
n
292
HIS
292
A
PRO
293
n
293
PRO
293
A
SER
294
n
294
SER
294
A
THR
295
n
295
THR
295
A
SER
296
n
296
SER
296
A
GLN
297
n
297
GLN
297
A
ALA
298
n
298
ALA
298
A
TYR
299
n
299
TYR
299
A
LYS
300
n
300
LYS
300
A
GLN
301
n
301
GLN
301
A
PHE
302
n
302
PHE
302
A
GLY
303
n
303
GLY
303
A
ASN
304
n
304
ASN
304
A
SER
305
n
305
SER
305
A
VAL
306
n
306
VAL
306
A
VAL
307
n
307
VAL
307
A
ILE
308
n
308
ILE
308
A
ASN
309
n
309
ASN
309
A
VAL
310
n
310
VAL
310
A
LEU
311
n
311
LEU
311
A
GLN
312
n
312
GLN
312
A
TYR
313
n
313
TYR
313
A
ILE
314
n
314
ILE
314
A
ALA
315
n
315
ALA
315
A
TYR
316
n
316
TYR
316
A
ASN
317
n
317
ASN
317
A
ILE
318
n
318
ILE
318
A
GLY
319
n
319
GLY
319
A
SER
320
n
320
SER
320
A
SER
321
n
321
SER
321
A
LEU
322
n
322
LEU
322
A
ASN
323
n
323
ASN
323
A
PHE
324
n
324
PHE
324
A
LYS
325
n
325
LYS
325
A
PRO
326
n
326
PRO
326
A
TYR
327
n
327
TYR
327
A
author_defined_assembly
3
trimeric
B
5CM
407
A
5CM
6
DC
C
5NC
427
5-AZA-CYTIDINE-5'MONOPHOSPHATE
B
5NC
6
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
15
C
O
ILE
15
A
N
ILE
74
C
N
ILE
74
A
O
LEU
75
C
O
LEU
75
A
N
VAL
115
C
N
VAL
115
A
O
VAL
116
C
O
VAL
116
A
N
CYS
170
C
N
CYS
170
A
O
ARG
165
C
O
ARG
165
A
N
LEU
152
C
N
LEU
152
A
O
LYS
270
C
O
LYS
270
A
N
VAL
267
C
N
VAL
267
A
O
GLY
264
C
O
GLY
264
A
N
TYR
242
C
N
TYR
242
A
O
ILE
241
C
O
ILE
241
A
N
GLY
230
C
N
GLY
230
1
A
A
NE2
O
HIS
HOH
275
470
2.19
1
B
DC
409
0.063
SIDE CHAIN
1
C
DG
428
0.050
SIDE CHAIN
1
C
DG
432
0.065
SIDE CHAIN
1
C
DG
433
0.052
SIDE CHAIN
1
A
TYR
265
0.076
SIDE CHAIN
1
B
B
O3'
P
DA
DC
412
413
1.81
1
-9.43
0.40
104.50
95.07
B
B
B
O4'
C4'
C3'
DC
DC
DC
402
402
402
N
1
2.78
0.40
120.30
123.08
B
B
B
C6
N1
C2
DC
DC
DC
402
402
402
N
1
-4.47
0.70
119.20
114.73
B
B
B
N1
C2
N3
DC
DC
DC
402
402
402
N
1
4.32
0.70
118.00
122.32
B
B
B
N3
C4
N4
DC
DC
DC
402
402
402
N
1
-5.46
0.70
120.20
114.74
B
B
B
C5
C4
N4
DC
DC
DC
402
402
402
N
1
-10.00
0.40
104.50
94.50
B
B
B
O4'
C4'
C3'
DC
DC
DC
403
403
403
N
1
-11.74
0.80
105.90
94.16
B
B
B
O4'
C1'
C2'
DC
DC
DC
403
403
403
N
1
6.33
0.70
118.00
124.33
B
B
B
N3
C4
N4
DC
DC
DC
403
403
403
N
1
-5.71
0.70
120.20
114.49
B
B
B
C5
C4
N4
DC
DC
DC
403
403
403
N
1
10.77
1.20
119.70
130.47
B
B
B
C3'
O3'
P
DC
DC
DA
403
403
404
Y
1
-9.29
0.90
105.70
96.41
B
B
B
O5'
P
OP2
DA
DA
DA
404
404
404
N
1
-4.45
0.40
104.50
100.05
B
B
B
O4'
C4'
C3'
DA
DA
DA
404
404
404
N
1
-12.58
0.80
105.90
93.32
B
B
B
O4'
C1'
C2'
DA
DA
DA
404
404
404
N
1
9.43
1.40
114.30
123.73
B
B
B
N9
C1'
C2'
DA
DA
DA
404
404
404
N
1
-9.34
0.70
108.00
98.66
B
B
B
O4'
C1'
N9
DA
DA
DA
404
404
404
N
1
3.10
0.50
129.30
132.40
B
B
B
N1
C2
N3
DA
DA
DA
404
404
404
N
1
-5.43
0.50
110.60
105.17
B
B
B
C2
N3
C4
DA
DA
DA
404
404
404
N
1
4.26
0.50
117.00
121.26
B
B
B
C4
C5
C6
DA
DA
DA
404
404
404
N
1
-3.60
0.50
117.70
114.10
B
B
B
C5
C6
N1
DA
DA
DA
404
404
404
N
1
3.64
0.60
118.60
122.24
B
B
B
N1
C6
N6
DA
DA
DA
404
404
404
N
1
13.09
1.20
119.70
132.79
B
B
B
C3'
O3'
P
DA
DA
DT
404
404
405
Y
1
-14.31
1.90
104.00
89.69
B
B
B
O3'
P
O5'
DA
DT
DT
404
405
405
Y
1
7.65
1.20
110.70
118.35
B
B
B
O5'
P
OP2
DT
DT
DT
405
405
405
N
1
-4.22
0.70
102.20
97.98
B
B
B
C4'
C3'
C2'
DT
DT
DT
405
405
405
N
1
-8.25
0.80
105.90
97.65
B
B
B
O4'
C1'
C2'
DT
DT
DT
405
405
405
N
1
4.46
0.60
114.60
119.06
B
B
B
N1
C2
N3
DT
DT
DT
405
405
405
N
1
-3.63
0.60
115.20
111.57
B
B
B
N3
C4
C5
DT
DT
DT
405
405
405
N
1
4.84
0.60
118.00
122.84
B
B
B
C4
C5
C6
DT
DT
DT
405
405
405
N
1
-6.68
0.60
119.00
112.32
B
B
B
C4
C5
C7
DT
DT
DT
405
405
405
N
1
10.32
1.20
119.70
130.02
B
B
B
C3'
O3'
P
DT
DT
DG
405
405
406
Y
1
-13.03
1.90
104.00
90.97
B
B
B
O3'
P
O5'
DT
DG
DG
405
406
406
Y
1
9.97
1.60
120.90
130.87
B
B
B
P
O5'
C5'
DG
DG
DG
406
406
406
N
1
-8.63
0.70
102.20
93.57
B
B
B
C4'
C3'
C2'
DG
DG
DG
406
406
406
N
1
-16.16
0.80
105.90
89.74
B
B
B
O4'
C1'
C2'
DG
DG
DG
406
406
406
N
1
5.28
0.30
108.30
113.58
B
B
B
O4'
C1'
N9
DG
DG
DG
406
406
406
N
1
-3.08
0.50
128.60
125.52
B
B
B
N3
C4
C5
DG
DG
DG
406
406
406
N
1
4.15
0.60
126.00
130.15
B
B
B
N3
C4
N9
DG
DG
DG
406
406
406
N
1
-4.02
0.60
130.40
126.38
B
B
B
C6
C5
N7
DG
DG
DG
406
406
406
N
1
5.90
0.30
108.30
114.20
B
B
B
O4'
C1'
N9
DG
DG
DG
408
408
408
N
1
-4.30
0.70
102.20
97.90
B
B
B
C4'
C3'
C2'
DC
DC
DC
409
409
409
N
1
-15.34
0.80
105.90
90.56
B
B
B
O4'
C1'
C2'
DC
DC
DC
409
409
409
N
1
4.68
0.30
108.30
112.98
B
B
B
O4'
C1'
N1
DC
DC
DC
409
409
409
N
1
3.16
0.50
119.90
123.06
B
B
B
C2
N3
C4
DC
DC
DC
409
409
409
N
1
-4.56
0.40
121.90
117.34
B
B
B
N3
C4
C5
DC
DC
DC
409
409
409
N
1
8.13
1.20
119.70
127.83
B
B
B
C3'
O3'
P
DC
DC
DT
409
409
410
Y
1
-4.83
0.70
102.20
97.37
B
B
B
C4'
C3'
C2'
DT
DT
DT
410
410
410
N
1
-7.70
0.80
105.90
98.20
B
B
B
O4'
C1'
C2'
DT
DT
DT
410
410
410
N
1
2.66
0.30
108.30
110.96
B
B
B
O4'
C1'
N1
DT
DT
DT
410
410
410
N
1
-3.79
0.50
121.30
117.51
B
B
B
C6
N1
C2
DT
DT
DT
410
410
410
N
1
5.16
0.60
118.00
123.16
B
B
B
C4
C5
C6
DT
DT
DT
410
410
410
N
1
-6.32
0.60
122.30
115.98
B
B
B
N3
C2
O2
DT
DT
DT
410
410
410
N
1
4.57
0.70
110.30
114.87
B
B
B
C1'
O4'
C4'
DG
DG
DG
411
411
411
N
1
-7.17
0.80
105.90
98.73
B
B
B
O4'
C1'
C2'
DG
DG
DG
411
411
411
N
1
2.16
0.30
108.30
110.46
B
B
B
O4'
C1'
N9
DG
DG
DG
411
411
411
N
1
17.96
1.20
119.70
137.66
B
B
B
C3'
O3'
P
DG
DG
DA
411
411
412
Y
1
-6.38
0.80
109.40
103.02
B
B
B
O5'
C5'
C4'
DA
DA
DA
412
412
412
N
1
6.59
0.60
106.00
112.59
B
B
B
O4'
C4'
C3'
DA
DA
DA
412
412
412
N
1
-4.37
0.70
102.20
97.83
B
B
B
C4'
C3'
C2'
DA
DA
DA
412
412
412
N
1
3.85
0.30
108.30
112.15
B
B
B
O4'
C1'
N9
DA
DA
DA
412
412
412
N
1
-3.94
0.50
129.30
125.36
B
B
B
N1
C2
N3
DA
DA
DA
412
412
412
N
1
3.41
0.50
110.60
114.01
B
B
B
C2
N3
C4
DA
DA
DA
412
412
412
N
1
-3.11
0.50
117.00
113.89
B
B
B
C4
C5
C6
DA
DA
DA
412
412
412
N
1
-6.78
0.40
104.50
97.72
B
B
B
O4'
C4'
C3'
DC
DC
DC
413
413
413
N
1
5.85
0.70
110.30
116.15
B
B
B
C1'
O4'
C4'
DC
DC
DC
413
413
413
N
1
7.27
0.30
108.30
115.57
B
B
B
O4'
C1'
N1
DC
DC
DC
413
413
413
N
1
4.22
0.60
118.90
123.12
B
B
B
N1
C2
O2
DC
DC
DC
413
413
413
N
1
-3.20
0.40
104.50
101.30
C
C
C
O4'
C4'
C3'
DG
DG
DG
422
422
422
N
1
27.76
1.40
114.30
142.06
C
C
C
N9
C1'
C2'
DG
DG
DG
422
422
422
N
1
-9.27
0.70
108.00
98.73
C
C
C
O4'
C1'
N9
DG
DG
DG
422
422
422
N
1
-2.70
0.40
106.40
103.70
C
C
C
C8
N9
C4
DG
DG
DG
422
422
422
N
1
2.55
0.40
105.40
107.95
C
C
C
N9
C4
C5
DG
DG
DG
422
422
422
N
1
6.48
0.30
108.30
114.78
C
C
C
O4'
C1'
N1
DT
DT
DT
423
423
423
N
1
4.71
0.60
114.60
119.31
C
C
C
N1
C2
N3
DT
DT
DT
423
423
423
N
1
-4.28
0.60
115.20
110.92
C
C
C
N3
C4
C5
DT
DT
DT
423
423
423
N
1
5.63
0.60
118.00
123.63
C
C
C
C4
C5
C6
DT
DT
DT
423
423
423
N
1
-5.96
0.60
122.30
116.34
C
C
C
N3
C2
O2
DT
DT
DT
423
423
423
N
1
-5.27
0.60
122.90
117.63
C
C
C
C6
C5
C7
DT
DT
DT
423
423
423
N
1
-7.14
0.80
105.90
98.76
C
C
C
O4'
C1'
C2'
DC
DC
DC
424
424
424
N
1
14.17
1.20
119.70
133.87
C
C
C
C3'
O3'
P
DC
DC
DA
424
424
425
Y
1
-6.37
0.80
105.90
99.53
C
C
C
O4'
C1'
C2'
DA
DA
DA
425
425
425
N
1
11.54
1.60
120.90
132.44
C
C
C
P
O5'
C5'
DG
DG
DG
426
426
426
N
1
-2.65
0.40
106.40
103.75
C
C
C
C8
N9
C4
DG
DG
DG
426
426
426
N
1
2.54
0.40
105.40
107.94
C
C
C
N9
C4
C5
DG
DG
DG
426
426
426
N
1
-5.96
0.80
105.90
99.94
C
C
C
O4'
C1'
C2'
DG
DG
DG
428
428
428
N
1
3.06
0.30
108.30
111.36
C
C
C
O4'
C1'
N9
DG
DG
DG
428
428
428
N
1
-3.12
0.40
106.40
103.28
C
C
C
C8
N9
C4
DG
DG
DG
428
428
428
N
1
-21.42
1.90
104.00
82.58
C
C
C
O3'
P
O5'
DG
DC
DC
428
429
429
Y
1
6.13
0.30
108.30
114.43
C
C
C
O4'
C1'
N1
DC
DC
DC
429
429
429
N
1
-2.48
0.40
121.90
119.42
C
C
C
N3
C4
C5
DC
DC
DC
429
429
429
N
1
4.42
0.60
118.90
123.32
C
C
C
N1
C2
O2
DC
DC
DC
429
429
429
N
1
-4.99
0.70
121.90
116.91
C
C
C
N3
C2
O2
DC
DC
DC
429
429
429
N
1
7.74
1.20
119.70
127.44
C
C
C
C3'
O3'
P
DC
DC
DA
429
429
430
Y
1
-16.12
1.90
104.00
87.88
C
C
C
O3'
P
O5'
DC
DA
DA
429
430
430
Y
1
7.05
0.30
108.30
115.35
C
C
C
O4'
C1'
N9
DA
DA
DA
430
430
430
N
1
-9.63
0.80
105.90
96.27
C
C
C
O4'
C1'
C2'
DT
DT
DT
431
431
431
N
1
10.75
0.30
108.30
119.05
C
C
C
O4'
C1'
N1
DT
DT
DT
431
431
431
N
1
-8.93
0.40
104.50
95.57
C
C
C
O4'
C4'
C3'
DG
DG
DG
432
432
432
N
1
-5.73
0.70
102.20
96.47
C
C
C
C4'
C3'
C2'
DG
DG
DG
432
432
432
N
1
3.55
0.50
111.90
115.45
C
C
C
C2
N3
C4
DG
DG
DG
432
432
432
N
1
6.12
0.90
116.20
122.32
C
C
C
N1
C2
N2
DG
DG
DG
432
432
432
N
1
-4.72
0.70
119.90
115.18
C
C
C
N3
C2
N2
DG
DG
DG
432
432
432
N
1
-2.74
0.40
104.50
101.76
C
C
C
O4'
C4'
C3'
DG
DG
DG
433
433
433
N
1
-14.36
0.80
105.90
91.54
C
C
C
O4'
C1'
C2'
DG
DG
DG
433
433
433
N
1
3.29
0.50
111.90
115.19
C
C
C
C2
N3
C4
DG
DG
DG
433
433
433
N
1
-3.78
0.50
128.60
124.82
C
C
C
N3
C4
C5
DG
DG
DG
433
433
433
N
1
B
B
P
O5'
DC
DC
402
402
0.072
0.010
1.593
1.665
N
1
B
B
N3
C4
DC
DC
402
402
0.058
0.007
1.335
1.393
N
1
B
B
C2
N3
DC
DC
403
403
0.070
0.008
1.353
1.423
N
1
B
B
C5
N7
DA
DA
404
404
-0.049
0.006
1.388
1.339
N
1
B
B
C5'
C4'
DT
DT
405
405
0.063
0.007
1.512
1.575
N
1
B
B
C5
C6
DT
DT
405
405
0.060
0.007
1.339
1.399
N
1
B
B
C5'
C4'
DG
DG
406
406
0.083
0.007
1.512
1.595
N
1
B
B
O3'
C3'
DG
DG
406
406
0.088
0.013
1.435
1.523
N
1
B
B
N9
C4
DG
DG
406
406
0.097
0.008
1.375
1.472
N
1
B
B
C5'
C4'
DG
DG
408
408
0.102
0.007
1.512
1.614
N
1
B
B
C5
N7
DG
DG
408
408
0.039
0.006
1.388
1.427
N
1
B
B
C5'
C4'
DC
DC
409
409
0.067
0.007
1.512
1.579
N
1
B
B
C5'
C4'
DT
DT
410
410
0.051
0.007
1.512
1.563
N
1
B
B
O3'
P
DT
DG
410
411
0.085
0.012
1.607
1.692
Y
1
B
B
N3
C4
DG
DG
411
411
-0.051
0.007
1.350
1.299
N
1
B
B
N3
C4
DA
DA
412
412
0.039
0.006
1.344
1.383
N
1
B
B
C5
N7
DA
DA
412
412
0.056
0.006
1.388
1.444
N
1
B
B
C8
N9
DA
DA
412
412
0.070
0.008
1.373
1.443
N
1
B
B
N9
C4
DA
DA
412
412
0.061
0.006
1.374
1.435
N
1
B
B
O3'
P
DA
DC
412
413
0.201
0.012
1.607
1.808
Y
1
B
B
P
O5'
DC
DC
413
413
0.072
0.010
1.593
1.665
N
1
B
B
N1
C6
DC
DC
413
413
0.037
0.006
1.367
1.404
N
1
C
C
P
O5'
DG
DG
422
422
0.131
0.010
1.593
1.724
N
1
C
C
C5'
C4'
DG
DG
422
422
0.086
0.007
1.512
1.598
N
1
C
C
C2'
C1'
DG
DG
422
422
-0.222
0.010
1.518
1.296
N
1
C
C
O4'
C1'
DG
DG
422
422
0.254
0.011
1.420
1.674
N
1
C
C
O3'
C3'
DT
DT
423
423
-0.041
0.006
1.419
1.378
N
1
C
C
C6
N1
DT
DT
423
423
-0.050
0.007
1.378
1.328
N
1
C
C
O3'
P
DC
DA
424
425
-0.074
0.012
1.607
1.533
Y
1
C
C
P
O5'
DA
DA
425
425
0.066
0.010
1.593
1.659
N
1
C
C
O3'
P
DA
DG
425
426
-0.081
0.012
1.607
1.526
Y
1
C
C
C5'
C4'
DG
DG
426
426
0.063
0.007
1.512
1.575
N
1
C
C
P
O5'
DG
DG
428
428
-0.092
0.010
1.593
1.501
N
1
C
C
C5'
C4'
DG
DG
428
428
0.082
0.007
1.512
1.594
N
1
C
C
P
O5'
DC
DC
429
429
0.083
0.010
1.593
1.676
N
1
C
C
C5'
C4'
DC
DC
429
429
0.135
0.007
1.512
1.647
N
1
C
C
O3'
P
DC
DA
429
430
0.085
0.012
1.607
1.692
Y
1
C
C
C5'
C4'
DA
DA
430
430
0.066
0.007
1.512
1.578
N
1
C
C
O3'
P
DA
DT
430
431
0.072
0.012
1.607
1.679
Y
1
C
C
C5'
C4'
DT
DT
431
431
0.074
0.007
1.512
1.586
N
1
C
C
C1'
N1
DT
DT
431
431
0.121
0.013
1.488
1.609
N
1
C
C
N1
C2
DT
DT
431
431
0.051
0.008
1.376
1.427
N
1
C
C
C2
N3
DG
DG
433
433
0.055
0.008
1.323
1.378
N
1
A
TYR
37
178.54
132.92
1
A
GLU
40
-171.80
134.94
1
A
GLU
58
-68.30
-179.51
1
A
ASP
60
11.56
108.87
1
A
PHE
84
-144.20
-25.54
1
A
HIS
127
-39.43
138.47
1
A
ASP
144
78.89
49.17
1
A
ASN
176
56.42
18.89
1
A
PHE
259
-107.62
43.42
1
A
ALA
260
-38.60
135.98
1
A
LYS
261
68.29
-36.54
1
A
ASN
268
39.01
42.93
0.205
0.205
2.55
29.3
15965
76.6
1
0.0
OTHER
PDB ENTRY 5MHT
2.55
29.3
129
3254
27
492
2606
0.012
1.7
25.9
1.6
0.32
2.67
1311
8
51.5
2.5
30.0
10MH
15976
0.075
1
14.9
3.23
77.2
0.275
2.50
2.54
2.89
50.2
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND HEMIMETHYLATED DNA CONTAINING 5,6-DIHYDRO-5-AZACYTOSINE AT THE TARGET
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
GLY
23
C
GLY
23
HELX_P
A
GLU
29
C
GLU
29
1
1
7
A
LYS
43
C
LYS
43
HELX_P
A
PHE
53
C
PHE
53
1
2
11
A
ILE
61
C
ILE
61
HELX_P
A
GLN
63
C
GLN
63
5
3
3
A
GLY
92
C
GLY
92
HELX_P
A
GLU
94
C
GLU
94
5
4
3
A
LEU
100
C
LEU
100
HELX_P
A
LYS
111
C
LYS
111
5
5
12
A
LYS
122
C
LYS
122
HELX_P
A
ALA
125
C
ALA
125
5
6
4
A
HIS
127
C
HIS
127
HELX_P
A
GLU
142
C
GLU
142
5
7
16
A
ALA
154
C
ALA
154
HELX_P
A
ASP
156
C
ASP
156
5
8
3
A
ASN
173
C
ASN
173
HELX_P
A
LEU
175
C
LEU
175
5
9
3
A
VAL
192
C
VAL
192
HELX_P
A
ASP
194
C
ASP
194
5
10
3
A
ASP
199
C
ASP
199
HELX_P
A
GLU
201
C
GLU
201
5
11
3
A
GLU
203
C
GLU
203
HELX_P
A
LEU
205
C
LEU
205
5
12
3
A
PRO
276
C
PRO
276
HELX_P
A
MET
283
C
MET
283
1
13
8
A
THR
295
C
THR
295
HELX_P
A
ASN
304
C
ASN
304
1
14
10
A
ILE
308
C
ILE
308
HELX_P
A
LEU
322
C
LEU
322
1
15
15
covale
1.664
both
B
DG
406
A
O3'
DG
5
1_555
B
5CM
407
A
P
5CM
6
1_555
covale
1.627
both
B
5CM
407
A
O3'
5CM
6
1_555
B
DG
408
A
P
DG
7
1_555
covale
1.636
both
C
DG
426
B
O3'
DG
5
1_555
C
5NC
427
B
P
5NC
6
1_555
covale
1.618
one
C
5NC
427
B
O3'
5NC
6
1_555
C
DG
428
B
P
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
402
A
N3
DC
1
1_555
C
DG
433
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
402
A
N4
DC
1
1_555
C
DG
433
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
402
A
O2
DC
1
1_555
C
DG
433
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
403
A
N3
DC
2
1_555
C
DG
432
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
403
A
N4
DC
2
1_555
C
DG
432
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
403
A
O2
DC
2
1_555
C
DG
432
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
B
DA
404
A
N1
DA
3
1_555
C
DT
431
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
B
DA
404
A
N6
DA
3
1_555
C
DT
431
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
B
DT
405
A
N3
DT
4
1_555
C
DA
430
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
B
DT
405
A
O4
DT
4
1_555
C
DA
430
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
B
DG
406
A
N1
DG
5
1_555
C
DC
429
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
406
A
N2
DG
5
1_555
C
DC
429
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
406
A
O6
DG
5
1_555
C
DC
429
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
B
5CM
407
A
N3
5CM
6
1_555
C
DG
428
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
B
5CM
407
A
N4
5CM
6
1_555
C
DG
428
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
B
5CM
407
A
O2
5CM
6
1_555
C
DG
428
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
409
A
N3
DC
8
1_555
C
DG
426
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
409
A
N4
DC
8
1_555
C
DG
426
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
409
A
O2
DC
8
1_555
C
DG
426
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
DT
410
A
N3
DT
9
1_555
C
DA
425
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
410
A
O4
DT
9
1_555
C
DA
425
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
B
DG
411
A
N1
DG
10
1_555
C
DC
424
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
411
A
N2
DG
10
1_555
C
DC
424
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
B
DG
411
A
O6
DG
10
1_555
C
DC
424
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
B
DA
412
A
N1
DA
11
1_555
C
DT
423
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
B
DA
412
A
N6
DA
11
1_555
C
DT
423
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
B
DC
413
A
N3
DC
12
1_555
C
DG
422
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
413
A
N4
DC
12
1_555
C
DG
422
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
413
A
O2
DC
12
1_555
C
DG
422
B
N2
DG
1
1_555
TRANSFERASE/DNA
TRANSFERASE, METHYLTRANSFERASE, RESTRICTION SYSTEM, COMPLEX (METHYLTRANSFERASE- DNA), TRANSFERASE-DNA COMPLEX
MTH1_HAEHA
UNP
3
P05102
10MH
PDB
1
10MH
10MH
PDB
2
10MH
1
327
10MH
1
327
P05102
A
1
1
327
402
413
10MH
402
413
10MH
B
2
1
12
422
433
10MH
422
433
10MH
C
3
1
12
5
4
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
PHE
14
C
PHE
14
A
LEU
17
C
LEU
17
A
ILE
74
C
ILE
74
A
GLY
78
C
GLY
78
A
VAL
115
C
VAL
115
A
VAL
121
C
VAL
121
A
GLU
164
C
GLU
164
A
PHE
171
C
PHE
171
A
HIS
148
C
HIS
148
A
ASN
153
C
ASN
153
A
LYS
270
C
LYS
270
A
ARG
272
C
ARG
272
A
GLY
264
C
GLY
264
A
VAL
267
C
VAL
267
A
ARG
240
C
ARG
240
A
SER
243
C
SER
243
A
ARG
228
C
ARG
228
A
ILE
231
C
ILE
231
BINDING SITE FOR RESIDUE SAH A 328
A
SAH
328
Software
18
A
PHE
18
C
PHE
18
18
1_555
A
ALA
19
C
ALA
19
18
1_555
A
GLY
20
C
GLY
20
18
1_555
A
LEU
21
C
LEU
21
18
1_555
A
GLY
23
C
GLY
23
18
1_555
A
ASN
39
C
ASN
39
18
1_555
A
GLU
40
C
GLU
40
18
1_555
A
TRP
41
C
TRP
41
18
1_555
A
ASP
60
C
ASP
60
18
1_555
A
ILE
61
C
ILE
61
18
1_555
A
GLY
78
C
GLY
78
18
1_555
A
ASN
304
C
ASN
304
18
1_555
A
SER
305
C
SER
305
18
1_555
A
VAL
306
C
VAL
306
18
1_555
A
HOH
338
G
HOH
18
1_555
A
HOH
340
G
HOH
18
1_555
A
HOH
384
G
HOH
18
1_555
A
HOH
451
G
HOH
18
1_555
155
trigonal
H 3 2