data_110D # _entry.id 110D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 110D pdb_0000110d 10.2210/pdb110d/pdb RCSB DDF039 ? ? WWPDB D_1000170027 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 110D _pdbx_database_status.recvd_initial_deposition_date 1993-01-21 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leonard, G.A.' 1 'Hambley, T.W.' 2 'McAuley-Hecht, K.' 3 'Brown, T.' 4 'Hunter, W.N.' 5 # _citation.id primary _citation.title ;Anthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 49 _citation.page_first 458 _citation.page_last 467 _citation.year 1993 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15299505 _citation.pdbx_database_id_DOI 10.1107/S090744499300527X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leonard, G.A.' 1 ? primary 'Hambley, T.W.' 2 ? primary 'McAuley-Hecht, K.' 3 ? primary 'Brown, T.' 4 ? primary 'Hunter, W.N.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*GP*CP*CP*G)-3') ; 1810.205 1 ? ? ? ? 2 non-polymer syn DAUNOMYCIN 527.520 1 ? ? ? ? 3 water nat water 18.015 49 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DG)(DC)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGGCCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 DAUNOMYCIN DM1 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DC n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM1 non-polymer . DAUNOMYCIN DAUNORUBICIN 'C27 H29 N O10' 527.520 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DM1 1 7 7 DM1 DM1 A . C 3 HOH 1 8 8 HOH HOH A . C 3 HOH 2 9 9 HOH HOH A . C 3 HOH 3 10 10 HOH HOH A . C 3 HOH 4 11 11 HOH HOH A . C 3 HOH 5 12 12 HOH HOH A . C 3 HOH 6 13 13 HOH HOH A . C 3 HOH 7 14 14 HOH HOH A . C 3 HOH 8 15 15 HOH HOH A . C 3 HOH 9 16 16 HOH HOH A . C 3 HOH 10 17 17 HOH HOH A . C 3 HOH 11 18 18 HOH HOH A . C 3 HOH 12 19 19 HOH HOH A . C 3 HOH 13 20 20 HOH HOH A . C 3 HOH 14 21 21 HOH HOH A . C 3 HOH 15 22 22 HOH HOH A . C 3 HOH 16 23 23 HOH HOH A . C 3 HOH 17 24 24 HOH HOH A . C 3 HOH 18 25 25 HOH HOH A . C 3 HOH 19 26 26 HOH HOH A . C 3 HOH 20 27 27 HOH HOH A . C 3 HOH 21 28 28 HOH HOH A . C 3 HOH 22 29 29 HOH HOH A . C 3 HOH 23 30 30 HOH HOH A . C 3 HOH 24 31 31 HOH HOH A . C 3 HOH 25 32 32 HOH HOH A . C 3 HOH 26 33 33 HOH HOH A . C 3 HOH 27 34 34 HOH HOH A . C 3 HOH 28 35 35 HOH HOH A . C 3 HOH 29 36 36 HOH HOH A . C 3 HOH 30 37 37 HOH HOH A . C 3 HOH 31 38 38 HOH HOH A . C 3 HOH 32 39 39 HOH HOH A . C 3 HOH 33 40 40 HOH HOH A . C 3 HOH 34 41 41 HOH HOH A . C 3 HOH 35 42 42 HOH HOH A . C 3 HOH 36 43 43 HOH HOH A . C 3 HOH 37 44 44 HOH HOH A . C 3 HOH 38 45 45 HOH HOH A . C 3 HOH 39 46 46 HOH HOH A . C 3 HOH 40 47 47 HOH HOH A . C 3 HOH 41 48 48 HOH HOH A . C 3 HOH 42 49 49 HOH HOH A . C 3 HOH 43 50 50 HOH HOH A . C 3 HOH 44 51 51 HOH HOH A . C 3 HOH 45 52 52 HOH HOH A . C 3 HOH 46 53 53 HOH HOH A . C 3 HOH 47 54 54 HOH HOH A . C 3 HOH 48 55 55 HOH HOH A . C 3 HOH 49 56 56 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 110D _cell.length_a 28.070 _cell.length_b 28.070 _cell.length_c 53.350 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 110D _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 110D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.90 _exptl_crystal.density_percent_sol 57.63 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.60 _exptl_crystal_grow.pdbx_details 'pH 6.60, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 110D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.900 _reflns.number_obs 1742 _reflns.number_all 3252 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 110D _refine.ls_number_reflns_obs 1108 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.000 _refine.ls_d_res_high 1.900 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2080000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 207 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 7.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it 9.900 8.000 ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 12.400 12.00 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it 12.600 12.00 ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 14.240 12.00 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d 0.022 0.017 ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d 0.054 0.030 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.040 0.025 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.062 0.030 ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.016 0.015 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.069 0.063 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.135 0.063 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 110D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 110D _struct.title ;ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 110D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 110D _struct_ref.pdbx_db_accession 110D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 110D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 110D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.6750000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 3 A DC 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 3 A DC 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 3 A DC 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 4 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 4 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 4 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM1 7 ? 8 'BINDING SITE FOR RESIDUE DM1 A 7' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC A 1 ? DC A 1 . ? 8_555 ? 2 AC1 8 DG A 2 ? DG A 2 . ? 8_555 ? 3 AC1 8 DG A 3 ? DG A 3 . ? 8_555 ? 4 AC1 8 DC A 5 ? DC A 5 . ? 1_555 ? 5 AC1 8 DG A 6 ? DG A 6 . ? 1_555 ? 6 AC1 8 HOH C . ? HOH A 34 . ? 1_555 ? 7 AC1 8 HOH C . ? HOH A 36 . ? 1_555 ? 8 AC1 8 HOH C . ? HOH A 50 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 37 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 43 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_445 _pdbx_validate_symm_contact.dist 2.04 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.356 1.419 -0.063 0.006 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.379 1.335 0.044 0.007 N 3 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.385 1.446 -0.061 0.010 N 4 1 N7 A DG 3 ? ? C8 A DG 3 ? ? 1.354 1.305 0.049 0.006 N 5 1 C8 A DG 3 ? ? N9 A DG 3 ? ? 1.329 1.374 -0.045 0.007 N 6 1 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? 1.379 1.446 -0.067 0.010 N 7 1 N1 A DC 4 ? ? C6 A DC 4 ? ? 1.325 1.367 -0.042 0.006 N 8 1 C2 A DC 4 ? ? N3 A DC 4 ? ? 1.403 1.353 0.050 0.008 N 9 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.293 1.335 -0.042 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 104.12 109.40 -5.28 0.80 N 2 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 117.69 109.80 7.89 1.10 N 3 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 124.75 118.90 5.85 0.60 N 4 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.12 121.90 -5.78 0.70 N 5 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 153.99 119.70 34.29 1.20 Y 6 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 107.21 119.60 -12.39 1.50 N 7 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 94.50 102.40 -7.90 0.80 N 8 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 118.03 125.10 -7.07 0.60 N 9 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 127.73 123.90 3.83 0.60 N 10 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 117.99 111.50 6.49 0.50 N 11 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 107.01 110.80 -3.79 0.40 N 12 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 108.74 104.30 4.44 0.50 N 13 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 134.91 130.40 4.51 0.60 N 14 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 115.25 119.90 -4.65 0.70 N 15 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.15 128.60 -4.45 0.60 N 16 1 "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 103.89 109.40 -5.51 0.80 N 17 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.13 108.30 3.83 0.30 N 18 1 N1 A DG 3 ? ? C2 A DG 3 ? ? N3 A DG 3 ? ? 127.58 123.90 3.68 0.60 N 19 1 N1 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 110.42 116.20 -5.78 0.90 N 20 1 N1 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 113.98 119.90 -5.92 0.60 N 21 1 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 134.91 128.60 6.31 0.60 N 22 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DC 4 ? ? 131.53 119.70 11.83 1.20 Y 23 1 "O5'" A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 128.30 110.70 17.60 1.20 N 24 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 99.68 105.90 -6.22 0.80 N 25 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.79 108.30 2.49 0.30 N 26 1 N3 A DC 4 ? ? C4 A DC 4 ? ? C5 A DC 4 ? ? 119.12 121.90 -2.78 0.40 N 27 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 122.92 118.90 4.02 0.60 N 28 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 117.68 121.90 -4.22 0.70 N 29 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 100.36 109.40 -9.04 0.80 N 30 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 96.52 102.40 -5.88 0.80 N 31 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 95.76 105.90 -10.14 0.80 N 32 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 123.71 108.30 15.41 0.30 N 33 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 124.90 118.90 6.00 0.60 N 34 1 "O3'" A DC 5 ? ? P A DG 6 ? ? "O5'" A DG 6 ? ? 91.90 104.00 -12.10 1.90 Y 35 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 118.97 110.70 8.27 1.20 N 36 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 93.85 109.40 -15.55 0.80 N 37 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 116.26 119.90 -3.64 0.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DM1 C1 C Y N 72 DM1 C2 C Y N 73 DM1 C3 C Y N 74 DM1 C4 C Y N 75 DM1 O4 O N N 76 DM1 C5 C Y N 77 DM1 C6 C N N 78 DM1 O6 O N N 79 DM1 C7 C Y N 80 DM1 C8 C Y N 81 DM1 O8 O N N 82 DM1 C9 C Y N 83 DM1 C10 C N S 84 DM1 O10 O N N 85 DM1 C11 C N N 86 DM1 C12 C N S 87 DM1 O12 O N N 88 DM1 C13 C N N 89 DM1 O13 O N N 90 DM1 C14 C N N 91 DM1 C15 C N N 92 DM1 C16 C Y N 93 DM1 C17 C Y N 94 DM1 O17 O N N 95 DM1 C18 C Y N 96 DM1 C19 C N N 97 DM1 O19 O N N 98 DM1 C20 C Y N 99 DM1 C21 C N N 100 DM1 "C1'" C N R 101 DM1 "C2'" C N N 102 DM1 "C3'" C N S 103 DM1 "N3'" N N N 104 DM1 "C4'" C N S 105 DM1 "O4'" O N N 106 DM1 "C5'" C N S 107 DM1 "O5'" O N N 108 DM1 "C6'" C N N 109 DM1 H1 H N N 110 DM1 H2 H N N 111 DM1 H3 H N N 112 DM1 HO8 H N N 113 DM1 H10 H N N 114 DM1 H111 H N N 115 DM1 H112 H N N 116 DM1 HO12 H N N 117 DM1 H141 H N N 118 DM1 H142 H N N 119 DM1 H143 H N N 120 DM1 H151 H N N 121 DM1 H152 H N N 122 DM1 HO17 H N N 123 DM1 H211 H N N 124 DM1 H212 H N N 125 DM1 H213 H N N 126 DM1 "H1'" H N N 127 DM1 "H2'1" H N N 128 DM1 "H2'2" H N N 129 DM1 "H3'" H N N 130 DM1 "HN'1" H N N 131 DM1 "HN'2" H N N 132 DM1 "H4'" H N N 133 DM1 "HO4'" H N N 134 DM1 "H5'" H N N 135 DM1 "H6'1" H N N 136 DM1 "H6'2" H N N 137 DM1 "H6'3" H N N 138 HOH O O N N 139 HOH H1 H N N 140 HOH H2 H N N 141 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DM1 C1 C2 doub Y N 75 DM1 C1 C20 sing Y N 76 DM1 C1 H1 sing N N 77 DM1 C2 C3 sing Y N 78 DM1 C2 H2 sing N N 79 DM1 C3 C4 doub Y N 80 DM1 C3 H3 sing N N 81 DM1 C4 O4 sing N N 82 DM1 C4 C5 sing Y N 83 DM1 O4 C21 sing N N 84 DM1 C5 C6 sing N N 85 DM1 C5 C20 doub Y N 86 DM1 C6 O6 doub N N 87 DM1 C6 C7 sing N N 88 DM1 C7 C8 doub Y N 89 DM1 C7 C18 sing Y N 90 DM1 C8 O8 sing N N 91 DM1 C8 C9 sing Y N 92 DM1 O8 HO8 sing N N 93 DM1 C9 C10 sing N N 94 DM1 C9 C16 doub Y N 95 DM1 C10 O10 sing N N 96 DM1 C10 C11 sing N N 97 DM1 C10 H10 sing N N 98 DM1 O10 "C1'" sing N N 99 DM1 C11 C12 sing N N 100 DM1 C11 H111 sing N N 101 DM1 C11 H112 sing N N 102 DM1 C12 O12 sing N N 103 DM1 C12 C13 sing N N 104 DM1 C12 C15 sing N N 105 DM1 O12 HO12 sing N N 106 DM1 C13 O13 doub N N 107 DM1 C13 C14 sing N N 108 DM1 C14 H141 sing N N 109 DM1 C14 H142 sing N N 110 DM1 C14 H143 sing N N 111 DM1 C15 C16 sing N N 112 DM1 C15 H151 sing N N 113 DM1 C15 H152 sing N N 114 DM1 C16 C17 sing Y N 115 DM1 C17 O17 sing N N 116 DM1 C17 C18 doub Y N 117 DM1 O17 HO17 sing N N 118 DM1 C18 C19 sing N N 119 DM1 C19 O19 doub N N 120 DM1 C19 C20 sing N N 121 DM1 C21 H211 sing N N 122 DM1 C21 H212 sing N N 123 DM1 C21 H213 sing N N 124 DM1 "C1'" "C2'" sing N N 125 DM1 "C1'" "O5'" sing N N 126 DM1 "C1'" "H1'" sing N N 127 DM1 "C2'" "C3'" sing N N 128 DM1 "C2'" "H2'1" sing N N 129 DM1 "C2'" "H2'2" sing N N 130 DM1 "C3'" "N3'" sing N N 131 DM1 "C3'" "C4'" sing N N 132 DM1 "C3'" "H3'" sing N N 133 DM1 "N3'" "HN'1" sing N N 134 DM1 "N3'" "HN'2" sing N N 135 DM1 "C4'" "O4'" sing N N 136 DM1 "C4'" "C5'" sing N N 137 DM1 "C4'" "H4'" sing N N 138 DM1 "O4'" "HO4'" sing N N 139 DM1 "C5'" "O5'" sing N N 140 DM1 "C5'" "C6'" sing N N 141 DM1 "C5'" "H5'" sing N N 142 DM1 "C6'" "H6'1" sing N N 143 DM1 "C6'" "H6'2" sing N N 144 DM1 "C6'" "H6'3" sing N N 145 HOH O H1 sing N N 146 HOH O H2 sing N N 147 # _ndb_struct_conf_na.entry_id 110D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 8_555 0.550 -0.539 0.053 7.831 1.780 -1.018 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 8_555 0.089 -0.451 -0.096 -12.660 7.121 -4.939 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DG 3 1_555 A DC 4 8_555 -0.390 -0.215 0.216 0.023 -6.976 -4.039 3 A_DG3:DC4_A A 3 ? A 4 ? 19 1 1 A DC 4 1_555 A DG 3 8_555 0.390 -0.215 0.216 -0.023 -6.976 -4.039 4 A_DC4:DG3_A A 4 ? A 3 ? 19 1 1 A DC 5 1_555 A DG 2 8_555 -0.089 -0.451 -0.096 12.660 7.121 -4.939 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 8_555 -0.550 -0.539 0.053 -7.831 1.780 -1.018 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 8_555 A DG 2 1_555 A DC 5 8_555 0.724 0.929 7.018 0.380 -1.941 34.532 2.203 -1.092 6.965 -3.267 -0.639 34.587 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_555 A DG 3 1_555 A DC 4 8_555 -1.478 0.811 3.072 -5.184 5.443 24.553 0.269 1.846 3.405 12.431 11.841 25.660 2 AA_DG2DG3:DC4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DG 3 1_555 A DC 4 8_555 A DC 4 1_555 A DG 3 8_555 0.000 -0.255 3.476 0.000 -2.985 39.321 -0.002 0.000 3.485 -4.428 0.000 39.430 3 AA_DG3DC4:DG3DC4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DC 4 1_555 A DG 3 8_555 A DC 5 1_555 A DG 2 8_555 1.478 0.811 3.072 5.184 5.443 24.553 0.269 -1.846 3.405 12.431 -11.841 25.660 4 AA_DC4DC5:DG2DG3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_555 A DG 6 1_555 A DC 1 8_555 -0.724 0.929 7.018 -0.380 -1.941 34.532 2.203 1.092 6.965 -3.267 0.639 34.587 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 110D _atom_sites.fract_transf_matrix[1][1] 0.035625 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035620 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018744 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? -19.029 20.418 23.202 1.00 33.16 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? -18.133 21.255 23.991 1.00 45.58 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? -16.884 20.415 24.146 1.00 31.91 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? -17.008 19.183 24.781 1.00 34.69 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? -16.118 20.132 22.850 1.00 51.36 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? -15.253 21.145 22.594 1.00 63.33 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? -15.596 18.714 22.978 1.00 44.64 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? -15.947 18.260 24.376 1.00 21.42 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? -16.429 16.895 24.472 1.00 16.02 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? -15.517 15.882 24.701 1.00 12.97 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? -14.318 16.042 24.813 1.00 14.18 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? -15.958 14.602 24.776 1.00 6.27 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? -17.308 14.327 24.728 1.00 5.01 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? -17.740 13.089 24.888 1.00 5.11 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? -18.257 15.368 24.520 1.00 24.25 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? -17.774 16.595 24.397 1.00 26.82 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? -14.515 22.133 21.676 1.00 75.83 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? -13.707 22.973 22.642 1.00 65.44 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? -15.377 23.085 20.865 1.00 69.51 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? -13.678 21.103 20.732 1.00 58.22 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? -12.463 20.494 21.127 1.00 33.03 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? -11.899 19.697 19.969 1.00 22.35 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? -12.805 18.655 19.862 1.00 21.87 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? -11.820 20.295 18.571 1.00 32.60 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? -10.599 19.860 17.926 1.00 48.60 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? -13.151 19.834 17.904 1.00 21.39 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? -13.086 18.414 18.475 1.00 24.79 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? -14.257 17.547 18.411 1.00 12.46 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? -15.568 17.892 18.395 1.00 14.49 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? -16.348 16.831 18.320 1.00 15.19 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? -15.565 15.714 18.267 1.00 4.73 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? -15.809 14.344 18.171 1.00 9.56 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? -16.912 13.855 18.091 1.00 6.46 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? -14.740 13.504 18.171 1.00 7.94 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? -13.471 14.063 18.235 1.00 2.34 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? -12.429 13.213 18.240 1.00 2.00 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? -13.154 15.346 18.326 1.00 20.84 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? -14.251 16.137 18.347 1.00 17.35 ? 2 DG A C4 1 ATOM 39 P P . DG A 1 3 ? -9.836 20.881 16.976 1.00 54.31 ? 3 DG A P 1 ATOM 40 O OP1 . DG A 1 3 ? -9.920 22.268 17.563 1.00 16.66 ? 3 DG A OP1 1 ATOM 41 O OP2 . DG A 1 3 ? -10.546 20.755 15.669 1.00 69.40 ? 3 DG A OP2 1 ATOM 42 O "O5'" . DG A 1 3 ? -8.311 20.561 16.939 1.00 23.11 ? 3 DG A "O5'" 1 ATOM 43 C "C5'" . DG A 1 3 ? -7.860 19.537 17.835 1.00 15.18 ? 3 DG A "C5'" 1 ATOM 44 C "C4'" . DG A 1 3 ? -7.489 18.380 16.912 1.00 27.56 ? 3 DG A "C4'" 1 ATOM 45 O "O4'" . DG A 1 3 ? -8.609 17.496 16.848 1.00 20.36 ? 3 DG A "O4'" 1 ATOM 46 C "C3'" . DG A 1 3 ? -7.144 18.745 15.471 1.00 15.85 ? 3 DG A "C3'" 1 ATOM 47 O "O3'" . DG A 1 3 ? -6.125 17.926 15.002 1.00 28.99 ? 3 DG A "O3'" 1 ATOM 48 C "C2'" . DG A 1 3 ? -8.483 18.459 14.709 1.00 23.83 ? 3 DG A "C2'" 1 ATOM 49 C "C1'" . DG A 1 3 ? -8.974 17.257 15.466 1.00 15.37 ? 3 DG A "C1'" 1 ATOM 50 N N9 . DG A 1 3 ? -10.428 17.103 15.295 1.00 10.44 ? 3 DG A N9 1 ATOM 51 C C8 . DG A 1 3 ? -11.447 17.956 15.279 1.00 8.67 ? 3 DG A C8 1 ATOM 52 N N7 . DG A 1 3 ? -12.668 17.387 15.146 1.00 6.41 ? 3 DG A N7 1 ATOM 53 C C5 . DG A 1 3 ? -12.376 16.034 15.109 1.00 12.31 ? 3 DG A C5 1 ATOM 54 C C6 . DG A 1 3 ? -13.232 14.916 15.002 1.00 8.94 ? 3 DG A C6 1 ATOM 55 O O6 . DG A 1 3 ? -14.456 14.759 14.885 1.00 14.38 ? 3 DG A O6 1 ATOM 56 N N1 . DG A 1 3 ? -12.522 13.740 15.077 1.00 2.00 ? 3 DG A N1 1 ATOM 57 C C2 . DG A 1 3 ? -11.172 13.670 15.135 1.00 7.33 ? 3 DG A C2 1 ATOM 58 N N2 . DG A 1 3 ? -10.779 12.429 15.093 1.00 2.00 ? 3 DG A N2 1 ATOM 59 N N3 . DG A 1 3 ? -10.333 14.653 15.237 1.00 12.94 ? 3 DG A N3 1 ATOM 60 C C4 . DG A 1 3 ? -11.012 15.823 15.210 1.00 12.53 ? 3 DG A C4 1 ATOM 61 P P . DC A 1 4 ? -5.106 18.100 13.802 1.00 27.47 ? 4 DC A P 1 ATOM 62 O OP1 . DC A 1 4 ? -3.840 17.693 14.613 1.00 11.86 ? 4 DC A OP1 1 ATOM 63 O OP2 . DC A 1 4 ? -5.134 19.481 13.359 1.00 33.52 ? 4 DC A OP2 1 ATOM 64 O "O5'" . DC A 1 4 ? -5.359 16.766 12.932 1.00 19.02 ? 4 DC A "O5'" 1 ATOM 65 C "C5'" . DC A 1 4 ? -4.806 15.500 13.412 1.00 9.30 ? 4 DC A "C5'" 1 ATOM 66 C "C4'" . DC A 1 4 ? -5.673 14.450 12.793 1.00 22.38 ? 4 DC A "C4'" 1 ATOM 67 O "O4'" . DC A 1 4 ? -7.015 14.672 13.017 1.00 19.58 ? 4 DC A "O4'" 1 ATOM 68 C "C3'" . DC A 1 4 ? -5.535 14.504 11.278 1.00 41.63 ? 4 DC A "C3'" 1 ATOM 69 O "O3'" . DC A 1 4 ? -4.749 13.384 10.894 1.00 62.12 ? 4 DC A "O3'" 1 ATOM 70 C "C2'" . DC A 1 4 ? -6.936 14.442 10.761 1.00 29.96 ? 4 DC A "C2'" 1 ATOM 71 C "C1'" . DC A 1 4 ? -7.773 14.032 11.961 1.00 9.37 ? 4 DC A "C1'" 1 ATOM 72 N N1 . DC A 1 4 ? -9.126 14.641 11.838 1.00 17.15 ? 4 DC A N1 1 ATOM 73 C C2 . DC A 1 4 ? -10.271 13.827 11.764 1.00 7.04 ? 4 DC A C2 1 ATOM 74 O O2 . DC A 1 4 ? -10.220 12.575 11.796 1.00 21.58 ? 4 DC A O2 1 ATOM 75 N N3 . DC A 1 4 ? -11.534 14.425 11.636 1.00 5.28 ? 4 DC A N3 1 ATOM 76 C C4 . DC A 1 4 ? -11.629 15.773 11.598 1.00 2.00 ? 4 DC A C4 1 ATOM 77 N N4 . DC A 1 4 ? -12.828 16.311 11.454 1.00 16.96 ? 4 DC A N4 1 ATOM 78 C C5 . DC A 1 4 ? -10.456 16.542 11.646 1.00 4.22 ? 4 DC A C5 1 ATOM 79 C C6 . DC A 1 4 ? -9.283 15.955 11.780 1.00 12.02 ? 4 DC A C6 1 ATOM 80 P P . DC A 1 5 ? -3.719 13.443 9.651 1.00 47.78 ? 5 DC A P 1 ATOM 81 O OP1 . DC A 1 5 ? -2.650 12.480 9.918 1.00 59.71 ? 5 DC A OP1 1 ATOM 82 O OP2 . DC A 1 5 ? -3.222 14.855 9.635 1.00 62.69 ? 5 DC A OP2 1 ATOM 83 O "O5'" . DC A 1 5 ? -4.682 13.053 8.456 1.00 48.62 ? 5 DC A "O5'" 1 ATOM 84 C "C5'" . DC A 1 5 ? -4.929 11.632 8.227 1.00 35.27 ? 5 DC A "C5'" 1 ATOM 85 C "C4'" . DC A 1 5 ? -6.288 11.697 7.544 1.00 16.85 ? 5 DC A "C4'" 1 ATOM 86 O "O4'" . DC A 1 5 ? -6.973 12.704 8.323 1.00 35.13 ? 5 DC A "O4'" 1 ATOM 87 C "C3'" . DC A 1 5 ? -6.302 12.261 6.130 1.00 29.47 ? 5 DC A "C3'" 1 ATOM 88 O "O3'" . DC A 1 5 ? -6.973 11.497 5.127 1.00 23.41 ? 5 DC A "O3'" 1 ATOM 89 C "C2'" . DC A 1 5 ? -6.872 13.676 6.343 1.00 14.93 ? 5 DC A "C2'" 1 ATOM 90 C "C1'" . DC A 1 5 ? -7.913 13.286 7.416 1.00 5.42 ? 5 DC A "C1'" 1 ATOM 91 N N1 . DC A 1 5 ? -8.814 14.377 7.773 1.00 11.14 ? 5 DC A N1 1 ATOM 92 C C2 . DC A 1 5 ? -10.189 14.055 7.954 1.00 7.75 ? 5 DC A C2 1 ATOM 93 O O2 . DC A 1 5 ? -10.672 12.884 7.906 1.00 15.37 ? 5 DC A O2 1 ATOM 94 N N3 . DC A 1 5 ? -11.017 15.102 8.253 1.00 8.62 ? 5 DC A N3 1 ATOM 95 C C4 . DC A 1 5 ? -10.594 16.317 8.381 1.00 3.00 ? 5 DC A C4 1 ATOM 96 N N4 . DC A 1 5 ? -11.492 17.266 8.632 1.00 7.52 ? 5 DC A N4 1 ATOM 97 C C5 . DC A 1 5 ? -9.190 16.646 8.179 1.00 4.57 ? 5 DC A C5 1 ATOM 98 C C6 . DC A 1 5 ? -8.337 15.652 7.901 1.00 5.04 ? 5 DC A C6 1 ATOM 99 P P . DG A 1 6 ? -6.072 10.470 4.172 1.00 23.74 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? -5.468 9.300 4.951 1.00 42.39 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? -5.154 11.273 3.398 1.00 10.84 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? -7.424 9.875 3.441 1.00 22.53 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? -7.756 8.497 3.777 1.00 42.63 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? -8.615 8.283 2.502 1.00 45.74 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? -9.580 9.325 2.705 1.00 29.19 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? -7.871 8.755 1.243 1.00 46.79 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? -6.908 7.902 0.656 1.00 53.97 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? -9.041 9.207 0.389 1.00 35.66 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? -10.010 9.799 1.398 1.00 22.35 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? -10.102 11.279 1.440 1.00 9.59 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? -9.041 12.137 1.467 1.00 2.00 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? -9.395 13.381 1.499 1.00 12.93 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? -10.810 13.339 1.478 1.00 7.35 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? -11.781 14.383 1.510 1.00 5.47 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? -11.649 15.613 1.590 1.00 10.55 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? -13.072 13.909 1.499 1.00 14.41 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? -13.384 12.589 1.435 1.00 2.00 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? -14.647 12.224 1.387 1.00 5.70 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? -12.449 11.618 1.403 1.00 4.38 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? -11.220 12.067 1.435 1.00 2.15 ? 6 DG A C4 1 HETATM 121 C C1 . DM1 B 2 . ? -12.056 18.591 5.250 1.00 6.70 ? 7 DM1 A C1 1 HETATM 122 C C2 . DM1 B 2 . ? -10.824 19.307 5.244 1.00 18.47 ? 7 DM1 A C2 1 HETATM 123 C C3 . DM1 B 2 . ? -9.634 18.703 5.111 1.00 25.90 ? 7 DM1 A C3 1 HETATM 124 C C4 . DM1 B 2 . ? -9.575 17.297 4.967 1.00 26.46 ? 7 DM1 A C4 1 HETATM 125 O O4 . DM1 B 2 . ? -8.429 16.679 4.764 1.00 27.22 ? 7 DM1 A O4 1 HETATM 126 C C5 . DM1 B 2 . ? -10.793 16.547 4.967 1.00 19.40 ? 7 DM1 A C5 1 HETATM 127 C C6 . DM1 B 2 . ? -10.784 15.113 4.801 1.00 2.00 ? 7 DM1 A C6 1 HETATM 128 O O6 . DM1 B 2 . ? -9.723 14.501 4.583 1.00 18.84 ? 7 DM1 A O6 1 HETATM 129 C C7 . DM1 B 2 . ? -12.098 14.445 4.823 1.00 3.59 ? 7 DM1 A C7 1 HETATM 130 C C8 . DM1 B 2 . ? -12.126 13.061 4.679 1.00 12.48 ? 7 DM1 A C8 1 HETATM 131 O O8 . DM1 B 2 . ? -11.017 12.295 4.407 1.00 17.33 ? 7 DM1 A O8 1 HETATM 132 C C9 . DM1 B 2 . ? -13.392 12.401 4.663 1.00 9.72 ? 7 DM1 A C9 1 HETATM 133 C C10 . DM1 B 2 . ? -13.325 10.883 4.684 1.00 11.64 ? 7 DM1 A C10 1 HETATM 134 O O10 . DM1 B 2 . ? -12.328 10.728 5.714 1.00 25.47 ? 7 DM1 A O10 1 HETATM 135 C C11 . DM1 B 2 . ? -14.759 10.254 4.647 1.00 20.27 ? 7 DM1 A C11 1 HETATM 136 C C12 . DM1 B 2 . ? -16.067 10.872 5.271 1.00 18.74 ? 7 DM1 A C12 1 HETATM 137 O O12 . DM1 B 2 . ? -15.433 10.933 6.594 1.00 33.94 ? 7 DM1 A O12 1 HETATM 138 C C13 . DM1 B 2 . ? -17.499 10.372 5.042 1.00 10.36 ? 7 DM1 A C13 1 HETATM 139 O O13 . DM1 B 2 . ? -18.389 10.998 4.444 1.00 20.60 ? 7 DM1 A O13 1 HETATM 140 C C14 . DM1 B 2 . ? -17.530 8.980 5.538 1.00 4.91 ? 7 DM1 A C14 1 HETATM 141 C C15 . DM1 B 2 . ? -15.916 12.379 4.956 1.00 13.25 ? 7 DM1 A C15 1 HETATM 142 C C16 . DM1 B 2 . ? -14.568 13.039 4.801 1.00 12.01 ? 7 DM1 A C16 1 HETATM 143 C C17 . DM1 B 2 . ? -14.566 14.459 4.967 1.00 18.61 ? 7 DM1 A C17 1 HETATM 144 O O17 . DM1 B 2 . ? -15.753 15.065 5.170 1.00 20.29 ? 7 DM1 A O17 1 HETATM 145 C C18 . DM1 B 2 . ? -13.308 15.121 4.946 1.00 15.20 ? 7 DM1 A C18 1 HETATM 146 C C19 . DM1 B 2 . ? -13.333 16.573 5.116 1.00 10.58 ? 7 DM1 A C19 1 HETATM 147 O O19 . DM1 B 2 . ? -14.403 17.187 5.330 1.00 17.03 ? 7 DM1 A O19 1 HETATM 148 C C20 . DM1 B 2 . ? -11.977 17.227 5.111 1.00 16.51 ? 7 DM1 A C20 1 HETATM 149 C C21 . DM1 B 2 . ? -7.186 17.462 4.769 1.00 29.21 ? 7 DM1 A C21 1 HETATM 150 C "C1'" . DM1 B 2 . ? -11.643 9.524 5.591 1.00 32.49 ? 7 DM1 A "C1'" 1 HETATM 151 C "C2'" . DM1 B 2 . ? -11.088 9.485 7.005 1.00 43.28 ? 7 DM1 A "C2'" 1 HETATM 152 C "C3'" . DM1 B 2 . ? -12.210 9.047 7.965 1.00 41.62 ? 7 DM1 A "C3'" 1 HETATM 153 N "N3'" . DM1 B 2 . ? -11.725 9.179 9.363 1.00 55.77 ? 7 DM1 A "N3'" 1 HETATM 154 C "C4'" . DM1 B 2 . ? -12.486 7.607 7.576 1.00 52.51 ? 7 DM1 A "C4'" 1 HETATM 155 O "O4'" . DM1 B 2 . ? -11.503 6.734 8.093 1.00 56.38 ? 7 DM1 A "O4'" 1 HETATM 156 C "C5'" . DM1 B 2 . ? -13.005 7.520 6.178 1.00 54.71 ? 7 DM1 A "C5'" 1 HETATM 157 O "O5'" . DM1 B 2 . ? -12.345 8.348 5.207 1.00 57.65 ? 7 DM1 A "O5'" 1 HETATM 158 C "C6'" . DM1 B 2 . ? -12.968 6.060 5.586 1.00 42.32 ? 7 DM1 A "C6'" 1 HETATM 159 O O . HOH C 3 . ? -4.985 18.063 19.265 1.00 20.71 ? 8 HOH A O 1 HETATM 160 O O . HOH C 3 . ? -3.046 17.078 17.766 1.00 39.77 ? 9 HOH A O 1 HETATM 161 O O . HOH C 3 . ? -13.824 25.504 21.415 1.00 73.90 ? 10 HOH A O 1 HETATM 162 O O . HOH C 3 . ? -5.799 17.198 1.483 1.00 80.88 ? 11 HOH A O 1 HETATM 163 O O . HOH C 3 . ? -5.030 6.290 4.801 1.00 33.45 ? 12 HOH A O 1 HETATM 164 O O . HOH C 3 . ? -1.300 16.727 13.631 1.00 66.63 ? 13 HOH A O 1 HETATM 165 O O . HOH C 3 . ? -19.360 18.234 21.095 1.00 62.30 ? 14 HOH A O 1 HETATM 166 O O . HOH C 3 . ? -21.218 15.554 21.244 1.00 78.98 ? 15 HOH A O 1 HETATM 167 O O . HOH C 3 . ? -11.307 24.401 12.484 1.00 57.11 ? 16 HOH A O 1 HETATM 168 O O . HOH C 3 . ? -6.069 7.613 6.770 1.00 35.93 ? 17 HOH A O 1 HETATM 169 O O . HOH C 3 . ? -6.801 7.565 8.936 1.00 29.27 ? 18 HOH A O 1 HETATM 170 O O . HOH C 3 . ? -8.210 10.571 13.780 1.00 25.77 ? 19 HOH A O 1 HETATM 171 O O . HOH C 3 . ? -20.805 17.083 24.003 1.00 47.20 ? 20 HOH A O 1 HETATM 172 O O . HOH C 3 . ? -15.722 17.656 11.481 1.00 77.65 ? 21 HOH A O 1 HETATM 173 O O . HOH C 3 . ? -0.609 20.820 12.431 1.00 31.06 ? 22 HOH A O 1 HETATM 174 O O . HOH C 3 . ? -13.109 19.088 11.812 1.00 36.78 ? 23 HOH A O 1 HETATM 175 O O . HOH C 3 . ? -12.943 24.769 6.669 1.00 56.93 ? 24 HOH A O 1 HETATM 176 O O . HOH C 3 . ? -1.639 11.801 15.279 1.00 37.15 ? 25 HOH A O 1 HETATM 177 O O . HOH C 3 . ? -16.710 21.288 15.925 1.00 59.23 ? 26 HOH A O 1 HETATM 178 O O . HOH C 3 . ? -5.524 18.549 8.189 1.00 29.66 ? 27 HOH A O 1 HETATM 179 O O . HOH C 3 . ? -6.537 18.439 10.899 1.00 37.14 ? 28 HOH A O 1 HETATM 180 O O . HOH C 3 . ? -21.662 18.574 19.249 1.00 49.24 ? 29 HOH A O 1 HETATM 181 O O . HOH C 3 . ? -15.551 19.335 15.061 1.00 39.68 ? 30 HOH A O 1 HETATM 182 O O . HOH C 3 . ? -4.949 6.832 1.659 1.00 77.39 ? 31 HOH A O 1 HETATM 183 O O . HOH C 3 . ? -10.145 27.060 25.554 1.00 76.41 ? 32 HOH A O 1 HETATM 184 O O . HOH C 3 . ? -12.031 24.261 21.927 1.00 63.95 ? 33 HOH A O 1 HETATM 185 O O . HOH C 3 . ? -19.104 12.157 1.878 1.00 61.02 ? 34 HOH A O 1 HETATM 186 O O . HOH C 3 . ? -17.948 24.536 12.756 1.00 49.72 ? 35 HOH A O 1 HETATM 187 O O . HOH C 3 . ? -7.702 15.152 2.193 1.00 14.96 ? 36 HOH A O 1 HETATM 188 O O . HOH C 3 . ? -2.543 14.596 5.682 1.00 43.64 ? 37 HOH A O 1 HETATM 189 O O . HOH C 3 . ? -1.847 17.642 9.512 1.00 72.07 ? 38 HOH A O 1 HETATM 190 O O . HOH C 3 . ? -4.250 12.121 16.181 1.00 40.44 ? 39 HOH A O 1 HETATM 191 O O . HOH C 3 . ? -0.772 7.660 10.606 1.00 49.88 ? 40 HOH A O 1 HETATM 192 O O . HOH C 3 . ? -4.213 16.314 7.464 1.00 56.44 ? 41 HOH A O 1 HETATM 193 O O . HOH C 3 . ? -18.299 19.006 11.678 1.00 58.51 ? 42 HOH A O 1 HETATM 194 O O . HOH C 3 . ? -12.536 27.172 6.679 1.00 46.51 ? 43 HOH A O 1 HETATM 195 O O . HOH C 3 . ? -13.120 24.758 19.270 1.00 56.31 ? 44 HOH A O 1 HETATM 196 O O . HOH C 3 . ? -0.567 9.701 12.933 1.00 64.33 ? 45 HOH A O 1 HETATM 197 O O . HOH C 3 . ? -5.982 19.655 1.617 1.00 32.37 ? 46 HOH A O 1 HETATM 198 O O . HOH C 3 . ? -4.300 14.726 16.752 1.00 38.37 ? 47 HOH A O 1 HETATM 199 O O . HOH C 3 . ? -14.577 24.067 8.643 1.00 40.98 ? 48 HOH A O 1 HETATM 200 O O . HOH C 3 . ? -17.530 23.138 16.923 1.00 38.00 ? 49 HOH A O 1 HETATM 201 O O . HOH C 3 . ? -10.004 4.839 8.285 1.00 45.25 ? 50 HOH A O 1 HETATM 202 O O . HOH C 3 . ? -8.289 22.683 24.819 1.00 58.01 ? 51 HOH A O 1 HETATM 203 O O . HOH C 3 . ? -14.992 24.803 17.280 1.00 43.21 ? 52 HOH A O 1 HETATM 204 O O . HOH C 3 . ? -8.671 10.330 10.798 1.00 71.15 ? 53 HOH A O 1 HETATM 205 O O . HOH C 3 . ? -12.090 21.213 25.453 1.00 79.85 ? 54 HOH A O 1 HETATM 206 O O . HOH C 3 . ? -0.516 18.689 11.481 1.00 95.39 ? 55 HOH A O 1 HETATM 207 O O . HOH C 3 . ? -11.604 22.504 6.077 1.00 40.59 ? 56 HOH A O 1 #