0.038926 0.000000 0.000000 0.000000 0.023832 0.000000 0.000000 0.000000 0.015340 0.00000 0.00000 0.00000 Brown, T. Hunter, W.N. Kneale, G. Kennard, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.690 41.960 65.190 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 83 2402 2406 10.1073/pnas.83.8.2402 3458205 Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations. 1986 10.2210/pdb112d/pdb pdb_0000112d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 278.00 1 DIFFRACTOMETER SYNTEX P21 x-ray 1 1.0 3687.417 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*AP*GP*CP*G)-3') 2 syn polymer 18.015 water 83 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DA)(DG)(DC)(DG) CGCGAATTAGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.38 48.37 VAPOR DIFFUSION, SITTING DROP 7.40 pH 7.40, VAPOR DIFFUSION, SITTING DROP WATER 1 MPD 1 NA CACODYLATE 1 MG ACETATE 1 SPERMINE 1 -5.010 1 19 A 1 B 24 -3.608 A_DC1:DG24_B 1 -9.673 0.013 0.465 -0.282 4.852 1 19 A 2 B 23 0.362 A_DG2:DC23_B 2 -16.203 -0.714 0.379 -0.354 -8.153 1 19 A 3 B 22 -4.808 A_DC3:DG22_B 3 -14.099 -0.302 0.628 -0.296 -1.998 3 9 A 4 B 21 -87.111 A_DG4:DA21_B 4 -20.640 -0.124 0.076 4.647 7.081 1 20 A 5 B 20 3.654 A_DA5:DT20_B 5 -10.293 -0.310 0.296 -0.227 9.091 1 20 A 6 B 19 4.245 A_DA6:DT19_B 6 -17.475 -0.484 0.195 -0.277 -7.858 1 20 A 7 B 18 3.479 A_DT7:DA18_B 7 -14.048 0.399 0.332 -0.290 -2.199 1 20 A 8 B 17 -2.296 A_DT8:DA17_B 8 -12.819 0.947 0.087 -0.552 4.150 3 9 A 9 B 16 81.513 A_DA9:DG16_B 9 13.121 -0.580 -0.121 -4.158 8.768 1 19 A 10 B 15 -4.062 A_DG10:DC15_B 10 -8.539 0.656 0.427 -0.236 0.490 1 19 A 11 B 14 -7.278 A_DC11:DG14_B 11 -17.416 0.308 0.412 -0.361 7.776 1 19 A 12 B 13 -5.705 A_DG12:DC13_B 12 -7.166 -0.255 0.505 -0.273 3.103 32.879 A A 1 2 5.725 B B 24 23 3.101 3.235 0.289 0.105 AA_DC1DG2:DC23DG24_BB 1 0.867 -1.534 32.712 -0.340 -0.369 3.645 42.796 A A 2 3 -4.329 B B 23 22 3.696 -3.155 0.245 0.440 AA_DG2DC3:DG22DC23_BB 2 -1.608 2.205 42.656 0.958 -0.516 3.133 69.981 A A 3 4 -0.147 B B 22 21 3.086 -0.168 0.798 -1.160 AA_DC3DG4:DA21DG22_BB 3 5.128 -4.475 69.817 -1.006 -0.522 0.499 -8.063 A A 4 5 -43.465 B B 21 20 3.350 5.242 0.100 2.326 AA_DG4DA5:DT20DA21_BB 4 -3.910 -32.419 -4.719 -27.758 -7.652 3.119 37.691 A A 5 6 -0.146 B B 20 19 3.119 -0.094 -0.032 -0.159 AA_DA5DA6:DT19DT20_BB 5 -0.022 0.035 37.691 -0.234 0.046 3.784 36.165 A A 6 7 -6.057 B B 19 18 3.764 -3.753 0.230 -0.378 AA_DA6DT7:DA18DT19_BB 6 0.115 -0.186 35.976 0.003 -0.352 3.074 41.213 A A 7 8 -2.031 B B 18 17 3.091 -1.429 -0.323 -0.018 AA_DT7DT8:DA17DA18_BB 7 1.757 -2.497 41.154 0.120 0.638 0.252 -175.806 A A 8 9 -8.801 B B 17 16 2.168 17.303 -0.785 -3.453 AA_DT8DA9:DG16DA17_BB 8 -174.735 -88.883 -36.029 1.641 -1.268 -1.215 173.345 A A 9 10 -55.212 B B 16 15 -1.423 -107.842 -2.370 -1.919 AA_DA9DG10:DC15DG16_BB 9 134.729 -68.977 52.625 -1.474 0.547 3.458 38.712 A A 10 11 -16.537 B B 15 14 3.618 -10.807 -1.021 0.412 AA_DG10DC11:DG14DC15_BB 10 -4.132 6.322 37.006 2.091 0.978 3.277 34.628 A A 11 12 -1.935 B B 14 13 3.269 -1.151 0.177 -0.166 AA_DC11DG12:DC13DG14_BB 11 2.481 -4.171 34.523 -0.101 0.084 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1993-01-04 REL HOH water HOH 27 2 HOH HOH 27 A HOH 31 2 HOH HOH 31 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 36 2 HOH HOH 36 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 49 2 HOH HOH 49 A HOH 51 2 HOH HOH 51 A HOH 53 2 HOH HOH 53 A HOH 56 2 HOH HOH 56 A HOH 58 2 HOH HOH 58 A HOH 62 2 HOH HOH 62 A HOH 63 2 HOH HOH 63 A HOH 65 2 HOH HOH 65 A HOH 67 2 HOH HOH 67 A HOH 68 2 HOH HOH 68 A HOH 69 2 HOH HOH 69 A HOH 70 2 HOH HOH 70 A HOH 71 2 HOH HOH 71 A HOH 72 2 HOH HOH 72 A HOH 74 2 HOH HOH 74 A HOH 76 2 HOH HOH 76 A HOH 78 2 HOH HOH 78 A HOH 80 2 HOH HOH 80 A HOH 81 2 HOH HOH 81 A HOH 82 2 HOH HOH 82 A HOH 84 2 HOH HOH 84 A HOH 85 2 HOH HOH 85 A HOH 86 2 HOH HOH 86 A HOH 87 2 HOH HOH 87 A HOH 89 2 HOH HOH 89 A HOH 90 2 HOH HOH 90 A HOH 91 2 HOH HOH 91 A HOH 94 2 HOH HOH 94 A HOH 97 2 HOH HOH 97 A HOH 99 2 HOH HOH 99 A HOH 102 2 HOH HOH 102 A HOH 103 2 HOH HOH 103 A HOH 105 2 HOH HOH 105 A HOH 107 2 HOH HOH 107 A HOH 25 2 HOH HOH 25 B HOH 26 2 HOH HOH 26 B HOH 28 2 HOH HOH 28 B HOH 29 2 HOH HOH 29 B HOH 30 2 HOH HOH 30 B HOH 32 2 HOH HOH 32 B HOH 35 2 HOH HOH 35 B HOH 37 2 HOH HOH 37 B HOH 38 2 HOH HOH 38 B HOH 39 2 HOH HOH 39 B HOH 40 2 HOH HOH 40 B HOH 43 2 HOH HOH 43 B HOH 44 2 HOH HOH 44 B HOH 45 2 HOH HOH 45 B HOH 46 2 HOH HOH 46 B HOH 47 2 HOH HOH 47 B HOH 48 2 HOH HOH 48 B HOH 50 2 HOH HOH 50 B HOH 52 2 HOH HOH 52 B HOH 54 2 HOH HOH 54 B HOH 55 2 HOH HOH 55 B HOH 57 2 HOH HOH 57 B HOH 59 2 HOH HOH 59 B HOH 60 2 HOH HOH 60 B HOH 61 2 HOH HOH 61 B HOH 64 2 HOH HOH 64 B HOH 66 2 HOH HOH 66 B HOH 73 2 HOH HOH 73 B HOH 75 2 HOH HOH 75 B HOH 77 2 HOH HOH 77 B HOH 79 2 HOH HOH 79 B HOH 83 2 HOH HOH 83 B HOH 88 2 HOH HOH 88 B HOH 92 2 HOH HOH 92 B HOH 93 2 HOH HOH 93 B HOH 95 2 HOH HOH 95 B HOH 96 2 HOH HOH 96 B HOH 98 2 HOH HOH 98 B HOH 100 2 HOH HOH 100 B HOH 101 2 HOH HOH 101 B HOH 104 2 HOH HOH 104 B HOH 106 2 HOH HOH 106 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A A 9 n 9 DA 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B A 21 n 9 DA 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 1.90 0.30 108.30 110.20 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 3.66 0.30 108.30 111.96 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 3.11 0.50 106.80 109.91 A A A O4' C1' C2' DC DC DC 3 3 3 N 1 10.15 1.40 114.30 124.45 A A A N1 C1' C2' DC DC DC 3 3 3 N 1 7.11 0.30 108.30 115.41 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 4.45 0.30 108.30 112.75 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -6.00 0.70 108.00 102.00 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 7.86 1.20 119.70 127.56 A A A C3' O3' P DT DT DT 7 7 8 Y 1 8.64 1.40 114.30 122.94 A A A N1 C1' C2' DT DT DT 8 8 8 N 1 13.90 1.20 119.70 133.60 A A A C3' O3' P DT DT DA 8 8 9 Y 1 6.76 0.30 108.30 115.06 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 2.68 0.30 108.30 110.98 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 -5.15 0.70 108.00 102.85 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 8.15 1.20 119.70 127.85 B B B C3' O3' P DC DC DG 13 13 14 Y 1 9.22 0.30 108.30 117.52 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 -2.44 0.40 106.40 103.96 B B B C8 N9 C4 DG DG DG 14 14 14 N 1 -3.34 0.40 104.50 101.16 B B B O4' C4' C3' DC DC DC 15 15 15 N 1 4.06 0.50 106.80 110.86 B B B O4' C1' C2' DC DC DC 15 15 15 N 1 7.98 0.30 108.30 116.28 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 7.64 0.30 108.30 115.94 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 7.69 1.20 119.70 127.39 B B B C3' O3' P DG DG DA 16 16 17 Y 1 10.61 1.20 119.70 130.31 B B B C3' O3' P DA DA DA 17 17 18 Y 1 -3.75 0.60 122.30 118.55 B B B N3 C2 O2 DT DT DT 20 20 20 N 1 -6.42 1.00 110.10 103.68 B B B C1' O4' C4' DG DG DG 22 22 22 N 1 6.77 0.30 108.30 115.07 B B B O4' C1' N1 DC DC DC 23 23 23 N 1 A A O O HOH HOH 49 87 1.84 1_555 3_645 1 A B O O HOH HOH 67 93 1.94 1_555 4_465 1 A B OP1 O DG HOH 12 44 2.11 1_555 2_664 0.1700000 2.500 8.000 1298 1 2.000 TR isotropic TR isotropic 2.500 8.000 83 573 0 490 0 fix fix 2.500 112D 2707 0.000 1 refinement NUCLSQ MOLECULAR STRUCTURE OF THE G.A BASE PAIR IN DNA AND ITS IMPLICATIONS FOR THE MECHANISM OF TRANSVERSION MUTATIONS 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog TYPE_9_PAIR A DG 4 A N1 DG 4 1_555 B DA 21 B N7 DA 9 1_555 hydrog TYPE_9_PAIR A DG 4 A O6 DG 4 1_555 B DA 21 B N6 DA 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog TYPE_9_PAIR A DA 9 A N6 DA 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog TYPE_9_PAIR A DA 9 A N7 DA 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, MISMATCHED, DNA 112D PDB 1 112D 1 12 112D 1 12 112D A 1 1 12 13 24 112D 13 24 112D B 1 1 12 19 P 21 21 21