0.038685 0.000000 0.000000 0.000000 0.023815 0.000000 0.000000 0.000000 0.015361 0.00000 0.00000 0.00000 Corfield, P.W.R. Hunter, W.N. Brown, T. Robinson, P. Kennard, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.850 41.990 65.100 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H13 N4 O7 P 332.207 y 2'-DEOXYINOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C Y 120 N N Y 121 N C Y 122 N N Y 123 N C N 124 N C N 125 N O N 126 N N N 127 N C N 128 N N Y 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N O N 144 N P N 145 N O N 146 N O N 147 N O N 148 N C N 149 R C N 150 N O N 151 S C N 152 N O N 153 N C N 154 R C N 155 N N N 156 N C N 157 N O N 158 N N N 159 N C N 160 N O N 161 N C N 162 N C N 163 N C N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N O N 180 N H N 181 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing Y 136 N sing Y 137 N sing Y 138 N doub N 139 N sing Y 140 N sing N 141 N sing Y 142 N doub N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 15 7935 7949 10.1093/nar/15.19.7935 3671069 Inosine.adenine base pairs in a B-DNA duplex. 1987 10.2210/pdb114d/pdb pdb_0000114d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277.00 1 DIFFRACTOMETER SYNTEX P21 x-ray 1 1.0 3672.403 DNA (5'-D(*CP*GP*CP*IP*AP*AP*TP*TP*AP*GP*CP*G)-3') 2 syn polymer 18.015 water 64 nat water no no (DC)(DG)(DC)(DI)(DA)(DA)(DT)(DT)(DA)(DG)(DC)(DG) CGCIAATTAGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.41 48.86 VAPOR DIFFUSION, SITTING DROP 7.40 pH 7.40, VAPOR DIFFUSION, SITTING DROP WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 SPERMINE 1 6.989 1 19 A 1 B 24 -2.470 A_DC1:DG24_B 1 -11.241 -0.675 0.149 -0.131 0.248 1 19 A 2 B 23 -2.632 A_DG2:DC23_B 2 -8.573 -0.609 0.454 -0.305 -8.748 1 19 A 3 B 22 -1.547 A_DC3:DG22_B 3 -5.444 -0.526 0.336 -0.128 3.973 1 20 A 5 B 20 2.833 A_DA5:DT20_B 4 -12.083 0.011 0.329 -0.175 11.146 1 20 A 6 B 19 2.536 A_DA6:DT19_B 5 -21.751 -0.405 0.228 -0.226 -3.594 1 20 A 7 B 18 4.953 A_DT7:DA18_B 6 -13.829 0.430 -0.078 -0.259 -5.868 1 20 A 8 B 17 6.044 A_DT8:DA17_B 7 -17.636 0.807 -0.261 -0.368 9.700 1 19 A 10 B 15 -3.384 A_DG10:DC15_B 8 -4.885 -0.215 0.335 -0.180 -0.896 1 19 A 11 B 14 -2.335 A_DC11:DG14_B 9 -17.867 0.500 0.367 -0.295 -4.164 1 19 A 12 B 13 -2.911 A_DG12:DC13_B 10 -4.596 0.315 -0.360 -0.123 3.642 39.689 A A 1 2 0.345 B B 24 23 3.643 0.234 -0.050 0.260 AA_DC1DG2:DC23DG24_BB 1 -2.162 3.186 39.631 0.353 -0.207 3.585 42.800 A A 2 3 -6.731 B B 23 22 3.570 -4.890 0.846 0.358 AA_DG2DC3:DG22DC23_BB 2 5.449 -7.501 42.198 1.029 -0.560 6.590 66.087 A A 3 5 6.324 B B 22 20 6.553 6.886 -0.177 0.686 AA_DC3DA5:DT20DG22_BB 3 -1.987 1.825 65.741 0.071 0.001 2.895 35.017 A A 5 6 -2.592 B B 20 19 2.888 -1.559 -0.068 -0.311 AA_DA5DA6:DT19DT20_BB 4 0.992 -1.650 34.970 -0.309 0.245 3.757 37.575 A A 6 7 -0.344 B B 19 18 3.741 -0.221 0.330 -0.460 AA_DA6DT7:DA18DT19_BB 5 2.622 -4.074 37.486 -0.681 -0.120 3.172 39.975 A A 7 8 1.582 B B 18 17 3.186 1.080 -0.143 0.087 AA_DT7DT8:DA17DA18_BB 6 2.547 -3.728 39.883 0.006 0.494 6.458 64.287 A A 8 10 0.792 B B 17 15 6.467 0.842 -0.119 1.264 AA_DT8DG10:DC15DA17_BB 7 -7.497 7.059 63.890 1.117 -0.523 3.592 45.099 A A 10 11 -10.291 B B 15 14 3.560 -7.841 -1.278 0.237 AA_DG10DC11:DG14DC15_BB 8 -5.274 6.923 44.149 1.087 1.144 3.613 33.677 A A 11 12 -5.148 B B 14 13 3.663 -2.956 0.345 0.304 AA_DC11DG12:DC13DG14_BB 9 7.379 -12.851 32.752 1.069 0.760 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1993-01-04 REL HOH water HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 39 2 HOH HOH 39 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 50 2 HOH HOH 50 A HOH 51 2 HOH HOH 51 A HOH 52 2 HOH HOH 52 A HOH 54 2 HOH HOH 54 A HOH 56 2 HOH HOH 56 A HOH 57 2 HOH HOH 57 A HOH 59 2 HOH HOH 59 A HOH 60 2 HOH HOH 60 A HOH 61 2 HOH HOH 61 A HOH 62 2 HOH HOH 62 A HOH 63 2 HOH HOH 63 A HOH 64 2 HOH HOH 64 A HOH 66 2 HOH HOH 66 A HOH 70 2 HOH HOH 70 A HOH 72 2 HOH HOH 72 A HOH 74 2 HOH HOH 74 A HOH 77 2 HOH HOH 77 A HOH 78 2 HOH HOH 78 A HOH 80 2 HOH HOH 80 A HOH 83 2 HOH HOH 83 A HOH 84 2 HOH HOH 84 A HOH 86 2 HOH HOH 86 A HOH 29 2 HOH HOH 29 B HOH 32 2 HOH HOH 32 B HOH 33 2 HOH HOH 33 B HOH 34 2 HOH HOH 34 B HOH 38 2 HOH HOH 38 B HOH 40 2 HOH HOH 40 B HOH 43 2 HOH HOH 43 B HOH 46 2 HOH HOH 46 B HOH 53 2 HOH HOH 53 B HOH 55 2 HOH HOH 55 B HOH 58 2 HOH HOH 58 B HOH 65 2 HOH HOH 65 B HOH 67 2 HOH HOH 67 B HOH 68 2 HOH HOH 68 B HOH 69 2 HOH HOH 69 B HOH 71 2 HOH HOH 71 B HOH 73 2 HOH HOH 73 B HOH 75 2 HOH HOH 75 B HOH 76 2 HOH HOH 76 B HOH 79 2 HOH HOH 79 B HOH 81 2 HOH HOH 81 B HOH 82 2 HOH HOH 82 B HOH 85 2 HOH HOH 85 B HOH 87 2 HOH HOH 87 B HOH 88 2 HOH HOH 88 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A I 4 n 4 DI 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A A 9 n 9 DA 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B I 16 n 4 DI 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B A 21 n 9 DA 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B C4' DT 19 PLANAR 1 2.50 0.30 108.30 110.80 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 3.05 0.30 108.30 111.35 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 12.55 1.20 119.70 132.25 A A A C3' O3' P DT DT DT 7 7 8 Y 1 15.30 1.20 119.70 135.00 A A A C3' O3' P DT DT DA 8 8 9 Y 1 12.53 1.20 119.70 132.23 A A A C3' O3' P DG DG DC 10 10 11 Y 1 7.23 1.20 119.70 126.93 A A A C3' O3' P DC DC DG 11 11 12 Y 1 -5.14 0.70 108.00 102.86 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 4.32 0.30 108.30 112.62 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 -5.08 0.80 109.40 104.32 B B B O5' C5' C4' DC DC DC 15 15 15 N 1 -6.73 1.00 110.10 103.37 B B B C1' O4' C4' DC DC DC 15 15 15 N 1 3.27 0.30 108.30 111.57 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 10.90 1.20 119.70 130.60 B B B C3' O3' P DA DA DA 17 17 18 Y 1 4.37 0.60 106.00 110.37 B B B O4' C4' C3' DT DT DT 19 19 19 N 1 19.71 1.10 109.80 129.51 B B B C5' C4' O4' DT DT DT 19 19 19 N 1 3.44 0.30 108.30 111.74 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 1.91 0.30 108.30 110.21 B B B O4' C1' N1 DC DC DC 23 23 23 N 1 A A C5' C4' DC DC 11 11 -0.066 0.011 1.509 1.443 N 1 B A O5' O DC HOH 13 72 2.19 1_555 2_664 0.1900000 2.500 8.000 2105 1 1.000 TR isotropic TR isotropic 2.500 8.000 64 552 0 488 0 fix fix 2.500 114D 2207 1.000 1 refinement NUCLSQ INOSINE-ADENINE BASE PAIRS IN A B-DNA DUPLEX 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, MODIFIED, MISMATCHED, DNA 114D PDB 1 114D 1 12 114D 1 12 114D A 1 1 12 13 24 114D 13 24 114D B 1 1 12 19 P 21 21 21