0.038685
0.000000
0.000000
0.000000
0.023815
0.000000
0.000000
0.000000
0.015361
0.00000
0.00000
0.00000
Corfield, P.W.R.
Hunter, W.N.
Brown, T.
Robinson, P.
Kennard, O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
25.850
41.990
65.100
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H13 N4 O7 P
332.207
y
2'-DEOXYINOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
Y
120
N
N
Y
121
N
C
Y
122
N
N
Y
123
N
C
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
N
Y
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
O
N
144
N
P
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
C
N
149
R
C
N
150
N
O
N
151
S
C
N
152
N
O
N
153
N
C
N
154
R
C
N
155
N
N
N
156
N
C
N
157
N
O
N
158
N
N
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
H
N
181
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
sing
Y
137
N
sing
Y
138
N
doub
N
139
N
sing
Y
140
N
sing
N
141
N
sing
Y
142
N
doub
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
15
7935
7949
10.1093/nar/15.19.7935
3671069
Inosine.adenine base pairs in a B-DNA duplex.
1987
10.2210/pdb114d/pdb
pdb_0000114d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277.00
1
DIFFRACTOMETER
SYNTEX P21
x-ray
1
1.0
3672.403
DNA (5'-D(*CP*GP*CP*IP*AP*AP*TP*TP*AP*GP*CP*G)-3')
2
syn
polymer
18.015
water
64
nat
water
no
no
(DC)(DG)(DC)(DI)(DA)(DA)(DT)(DT)(DA)(DG)(DC)(DG)
CGCIAATTAGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
2.41
48.86
VAPOR DIFFUSION, SITTING DROP
7.40
pH 7.40, VAPOR DIFFUSION, SITTING DROP
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
SPERMINE
1
6.989
1
19
A
1
B
24
-2.470
A_DC1:DG24_B
1
-11.241
-0.675
0.149
-0.131
0.248
1
19
A
2
B
23
-2.632
A_DG2:DC23_B
2
-8.573
-0.609
0.454
-0.305
-8.748
1
19
A
3
B
22
-1.547
A_DC3:DG22_B
3
-5.444
-0.526
0.336
-0.128
3.973
1
20
A
5
B
20
2.833
A_DA5:DT20_B
4
-12.083
0.011
0.329
-0.175
11.146
1
20
A
6
B
19
2.536
A_DA6:DT19_B
5
-21.751
-0.405
0.228
-0.226
-3.594
1
20
A
7
B
18
4.953
A_DT7:DA18_B
6
-13.829
0.430
-0.078
-0.259
-5.868
1
20
A
8
B
17
6.044
A_DT8:DA17_B
7
-17.636
0.807
-0.261
-0.368
9.700
1
19
A
10
B
15
-3.384
A_DG10:DC15_B
8
-4.885
-0.215
0.335
-0.180
-0.896
1
19
A
11
B
14
-2.335
A_DC11:DG14_B
9
-17.867
0.500
0.367
-0.295
-4.164
1
19
A
12
B
13
-2.911
A_DG12:DC13_B
10
-4.596
0.315
-0.360
-0.123
3.642
39.689
A
A
1
2
0.345
B
B
24
23
3.643
0.234
-0.050
0.260
AA_DC1DG2:DC23DG24_BB
1
-2.162
3.186
39.631
0.353
-0.207
3.585
42.800
A
A
2
3
-6.731
B
B
23
22
3.570
-4.890
0.846
0.358
AA_DG2DC3:DG22DC23_BB
2
5.449
-7.501
42.198
1.029
-0.560
6.590
66.087
A
A
3
5
6.324
B
B
22
20
6.553
6.886
-0.177
0.686
AA_DC3DA5:DT20DG22_BB
3
-1.987
1.825
65.741
0.071
0.001
2.895
35.017
A
A
5
6
-2.592
B
B
20
19
2.888
-1.559
-0.068
-0.311
AA_DA5DA6:DT19DT20_BB
4
0.992
-1.650
34.970
-0.309
0.245
3.757
37.575
A
A
6
7
-0.344
B
B
19
18
3.741
-0.221
0.330
-0.460
AA_DA6DT7:DA18DT19_BB
5
2.622
-4.074
37.486
-0.681
-0.120
3.172
39.975
A
A
7
8
1.582
B
B
18
17
3.186
1.080
-0.143
0.087
AA_DT7DT8:DA17DA18_BB
6
2.547
-3.728
39.883
0.006
0.494
6.458
64.287
A
A
8
10
0.792
B
B
17
15
6.467
0.842
-0.119
1.264
AA_DT8DG10:DC15DA17_BB
7
-7.497
7.059
63.890
1.117
-0.523
3.592
45.099
A
A
10
11
-10.291
B
B
15
14
3.560
-7.841
-1.278
0.237
AA_DG10DC11:DG14DC15_BB
8
-5.274
6.923
44.149
1.087
1.144
3.613
33.677
A
A
11
12
-5.148
B
B
14
13
3.663
-2.956
0.345
0.304
AA_DC11DG12:DC13DG14_BB
9
7.379
-12.851
32.752
1.069
0.760
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1993-07-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1993-01-04
REL
HOH
water
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
39
2
HOH
HOH
39
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
HOH
47
2
HOH
HOH
47
A
HOH
48
2
HOH
HOH
48
A
HOH
49
2
HOH
HOH
49
A
HOH
50
2
HOH
HOH
50
A
HOH
51
2
HOH
HOH
51
A
HOH
52
2
HOH
HOH
52
A
HOH
54
2
HOH
HOH
54
A
HOH
56
2
HOH
HOH
56
A
HOH
57
2
HOH
HOH
57
A
HOH
59
2
HOH
HOH
59
A
HOH
60
2
HOH
HOH
60
A
HOH
61
2
HOH
HOH
61
A
HOH
62
2
HOH
HOH
62
A
HOH
63
2
HOH
HOH
63
A
HOH
64
2
HOH
HOH
64
A
HOH
66
2
HOH
HOH
66
A
HOH
70
2
HOH
HOH
70
A
HOH
72
2
HOH
HOH
72
A
HOH
74
2
HOH
HOH
74
A
HOH
77
2
HOH
HOH
77
A
HOH
78
2
HOH
HOH
78
A
HOH
80
2
HOH
HOH
80
A
HOH
83
2
HOH
HOH
83
A
HOH
84
2
HOH
HOH
84
A
HOH
86
2
HOH
HOH
86
A
HOH
29
2
HOH
HOH
29
B
HOH
32
2
HOH
HOH
32
B
HOH
33
2
HOH
HOH
33
B
HOH
34
2
HOH
HOH
34
B
HOH
38
2
HOH
HOH
38
B
HOH
40
2
HOH
HOH
40
B
HOH
43
2
HOH
HOH
43
B
HOH
46
2
HOH
HOH
46
B
HOH
53
2
HOH
HOH
53
B
HOH
55
2
HOH
HOH
55
B
HOH
58
2
HOH
HOH
58
B
HOH
65
2
HOH
HOH
65
B
HOH
67
2
HOH
HOH
67
B
HOH
68
2
HOH
HOH
68
B
HOH
69
2
HOH
HOH
69
B
HOH
71
2
HOH
HOH
71
B
HOH
73
2
HOH
HOH
73
B
HOH
75
2
HOH
HOH
75
B
HOH
76
2
HOH
HOH
76
B
HOH
79
2
HOH
HOH
79
B
HOH
81
2
HOH
HOH
81
B
HOH
82
2
HOH
HOH
82
B
HOH
85
2
HOH
HOH
85
B
HOH
87
2
HOH
HOH
87
B
HOH
88
2
HOH
HOH
88
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
I
4
n
4
DI
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
A
9
n
9
DA
9
A
G
10
n
10
DG
10
A
C
11
n
11
DC
11
A
G
12
n
12
DG
12
A
C
13
n
1
DC
13
B
G
14
n
2
DG
14
B
C
15
n
3
DC
15
B
I
16
n
4
DI
16
B
A
17
n
5
DA
17
B
A
18
n
6
DA
18
B
T
19
n
7
DT
19
B
T
20
n
8
DT
20
B
A
21
n
9
DA
21
B
G
22
n
10
DG
22
B
C
23
n
11
DC
23
B
G
24
n
12
DG
24
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
C4'
DT
19
PLANAR
1
2.50
0.30
108.30
110.80
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
3.05
0.30
108.30
111.35
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
12.55
1.20
119.70
132.25
A
A
A
C3'
O3'
P
DT
DT
DT
7
7
8
Y
1
15.30
1.20
119.70
135.00
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
1
12.53
1.20
119.70
132.23
A
A
A
C3'
O3'
P
DG
DG
DC
10
10
11
Y
1
7.23
1.20
119.70
126.93
A
A
A
C3'
O3'
P
DC
DC
DG
11
11
12
Y
1
-5.14
0.70
108.00
102.86
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
4.32
0.30
108.30
112.62
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
-5.08
0.80
109.40
104.32
B
B
B
O5'
C5'
C4'
DC
DC
DC
15
15
15
N
1
-6.73
1.00
110.10
103.37
B
B
B
C1'
O4'
C4'
DC
DC
DC
15
15
15
N
1
3.27
0.30
108.30
111.57
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
10.90
1.20
119.70
130.60
B
B
B
C3'
O3'
P
DA
DA
DA
17
17
18
Y
1
4.37
0.60
106.00
110.37
B
B
B
O4'
C4'
C3'
DT
DT
DT
19
19
19
N
1
19.71
1.10
109.80
129.51
B
B
B
C5'
C4'
O4'
DT
DT
DT
19
19
19
N
1
3.44
0.30
108.30
111.74
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
1.91
0.30
108.30
110.21
B
B
B
O4'
C1'
N1
DC
DC
DC
23
23
23
N
1
A
A
C5'
C4'
DC
DC
11
11
-0.066
0.011
1.509
1.443
N
1
B
A
O5'
O
DC
HOH
13
72
2.19
1_555
2_664
0.1900000
2.500
8.000
2105
1
1.000
TR
isotropic
TR
isotropic
2.500
8.000
64
552
0
488
0
fix
fix
2.500
114D
2207
1.000
1
refinement
NUCLSQ
INOSINE-ADENINE BASE PAIRS IN A B-DNA DUPLEX
1
N
N
1
N
N
2
N
N
2
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
24
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
24
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
24
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
23
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
23
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
23
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
20
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
20
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
14
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
14
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
14
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
13
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
13
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
13
B
N4
DC
1
1_555
DNA
B-DNA, DOUBLE HELIX, MODIFIED, MISMATCHED, DNA
114D
PDB
1
114D
1
12
114D
1
12
114D
A
1
1
12
13
24
114D
13
24
114D
B
1
1
12
19
P 21 21 21