0.021645 0.012497 0.000000 0.000000 0.024994 0.000000 0.000000 0.000000 0.013986 0.00000 0.00000 0.00000 Bingman, C.A. Jain, S. Zon, G. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 46.200 46.200 71.500 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer UK Nucleic Acids Res. NARHAD 0389 0305-1048 20 6637 6647 10.1093/nar/20.24.6637 1480485 Crystal and molecular structure of the alternating dodecamer d(GCGTACGTACGC) in the A-DNA form: comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG). 1992 UK J.Mol.Biol. JMOBAK 0070 0022-2836 227 738 756 Crystal and Molecular Structure of the A-DNA Dodecamer d(CCGTACGTACGG): Choice of Fragment Helical Axis 1992 10.2210/pdb117d/pdb pdb_0000117d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 OSCILLATION CAMERA x-ray 1 1.0 ROTATING ANODE ELLIOTT GX-6 3663.392 DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*C)-3') 1 syn polymer 18.015 water 33 nat water no no (DG)(DC)(DG)(DT)(DA)(DC)(DG)(DT)(DA)(DC)(DG)(DC) GCGTACGTACGC A polydeoxyribonucleotide n n n n n n n n n n n n 3.01 59.09 VAPOR DIFFUSION 6.50 pH 6.50, VAPOR DIFFUSION, temperature 277.00K 277.00 WATER 1 SPERMINE 1 [CO(NH3)6]3+ 1 NA CACODYLATE 1 WATER 2 PROPANOL 2 -12.290 1 19 A 1 A 12 0.320 A_DG1:DC12_A 1 -3.917 -0.274 -0.129 -0.085 -4.831 1 19 A 2 A 11 -3.669 A_DC2:DG11_A 2 -7.088 0.071 0.373 -0.164 2.240 1 19 A 3 A 10 -0.077 A_DG3:DC10_A 3 -9.199 -0.040 0.279 -0.118 0.674 1 20 A 4 A 9 2.734 A_DT4:DA9_A 4 -9.323 -0.042 0.139 -0.189 6.923 1 20 A 5 A 8 -1.724 A_DA5:DT8_A 5 -11.609 -0.088 0.249 -0.077 7.301 1 19 A 6 A 7 -0.579 A_DC6:DG7_A 6 -13.981 0.355 -0.204 -0.190 -7.301 1 19 A 7 A 6 -0.579 A_DG7:DC6_A 7 -13.981 -0.355 -0.204 -0.190 -6.923 1 20 A 8 A 5 -1.724 A_DT8:DA5_A 8 -11.609 0.088 0.249 -0.077 -0.674 1 20 A 9 A 4 2.735 A_DA9:DT4_A 9 -9.323 0.042 0.139 -0.189 -2.240 1 19 A 10 A 3 -0.077 A_DC10:DG3_A 10 -9.199 0.040 0.279 -0.118 4.831 1 19 A 11 A 2 -3.669 A_DG11:DC2_A 11 -7.088 -0.071 0.373 -0.164 12.290 1 19 A 12 A 1 0.320 A_DC12:DG1_A 12 -3.917 0.274 -0.129 -0.085 3.068 29.304 A A 1 2 10.399 A A 12 11 3.340 5.223 -0.216 -1.282 AA_DG1DC2:DG11DC12_AA 1 -3.342 6.654 28.654 -3.651 -0.287 2.815 34.698 A A 2 3 3.895 A A 11 10 2.940 2.321 0.470 -1.746 AA_DC2DG3:DC10DG11_AA 2 -0.349 0.586 34.621 -3.241 -0.836 3.319 29.971 A A 3 4 2.570 A A 10 9 3.424 1.327 -0.215 -1.595 AA_DG3DT4:DA9DC10_AA 3 2.732 -5.292 29.820 -3.366 0.998 2.721 31.982 A A 4 5 14.020 A A 9 8 3.083 7.653 -0.180 -1.167 AA_DT4DA5:DT8DA9_AA 4 0.802 -1.469 31.066 -3.365 0.458 2.896 34.641 A A 5 6 19.555 A A 8 7 3.412 11.429 0.262 -1.075 AA_DA5DC6:DG7DT8_AA 5 2.365 -4.046 32.672 -3.554 -0.078 1.316 36.858 A A 6 7 41.797 A A 7 6 3.541 24.327 0.000 -2.140 AA_DC6DG7:DC6DG7_AA 6 0.000 0.000 27.902 -6.204 0.000 2.896 34.641 A A 7 8 19.555 A A 6 5 3.412 11.429 -0.262 -1.075 AA_DG7DT8:DA5DC6_AA 7 -2.365 4.046 32.672 -3.554 0.078 2.721 31.982 A A 8 9 14.020 A A 5 4 3.083 7.653 0.180 -1.167 AA_DT8DA9:DT4DA5_AA 8 -0.802 1.469 31.066 -3.365 -0.458 3.319 29.971 A A 9 10 2.570 A A 4 3 3.424 1.327 0.215 -1.595 AA_DA9DC10:DG3DT4_AA 9 -2.732 5.292 29.820 -3.366 -0.998 2.815 34.698 A A 10 11 3.895 A A 3 2 2.940 2.321 -0.470 -1.746 AA_DC10DG11:DC2DG3_AA 10 0.349 -0.586 34.621 -3.241 0.836 3.068 29.304 A A 11 12 10.399 A A 2 1 3.340 5.223 0.216 -1.282 AA_DG11DC12:DG1DC2_AA 11 3.342 -6.654 28.654 -3.651 0.287 audit_author citation_author database_2 repository Initial release Version format compliance Version format compliance Database references Structure summary 1 0 1993-04-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-03-22 _audit_author.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1993-02-10 REL REL HOH water HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A G 1 n 1 DG 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A C 6 n 6 DC 6 A G 7 n 7 DG 7 A T 8 n 8 DT 8 A A 9 n 9 DA 9 A C 10 n 10 DC 10 A G 11 n 11 DG 11 A C 12 n 12 DC 12 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_565 x,x-y+1,-z+1/6 crystal symmetry operation -23.1000000000 40.0103736548 11.9166666667 1 3.57 0.30 108.30 111.87 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 -8.31 1.20 119.70 111.39 A A A C3' O3' P DG DG DC 1 1 2 Y 1 -11.11 1.60 120.90 109.79 A A A P O5' C5' DC DC DC 2 2 2 N 1 3.00 0.30 108.30 111.30 A A A O4' C1' N1 DC DC DC 2 2 2 N 1 -12.10 1.20 119.70 107.60 A A A C3' O3' P DC DC DG 2 2 3 Y 1 12.13 1.20 110.70 122.83 A A A O5' P OP1 DG DG DG 3 3 3 N 1 -5.68 0.80 109.40 103.72 A A A O5' C5' C4' DG DG DG 3 3 3 N 1 3.12 0.50 111.50 114.62 A A A C5 C6 N1 DG DG DG 3 3 3 N 1 -3.67 0.60 127.20 123.53 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 4.26 0.30 108.30 112.56 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -7.74 0.80 109.40 101.66 A A A O5' C5' C4' DC DC DC 6 6 6 N 1 4.82 0.30 108.30 113.12 A A A O4' C1' N1 DC DC DC 6 6 6 N 1 8.07 1.20 110.70 118.77 A A A O5' P OP1 DT DT DT 8 8 8 N 1 -5.47 0.60 127.20 121.73 A A A C2 N3 C4 DT DT DT 8 8 8 N 1 4.35 0.60 115.20 119.55 A A A N3 C4 C5 DT DT DT 8 8 8 N 1 -4.48 0.60 119.90 115.42 A A A N3 C4 O4 DT DT DT 8 8 8 N 1 4.88 0.60 118.60 123.48 A A A C6 N1 C2 DA DA DA 9 9 9 N 1 -3.94 0.50 129.30 125.36 A A A N1 C2 N3 DA DA DA 9 9 9 N 1 -3.42 0.50 117.70 114.28 A A A C5 C6 N1 DA DA DA 9 9 9 N 1 3.14 0.50 111.50 114.64 A A A C5 C6 N1 DG DG DG 11 11 11 N 1 -5.49 0.80 109.40 103.91 A A A O5' C5' C4' DC DC DC 12 12 12 N 1 4.73 0.30 108.30 113.03 A A A O4' C1' N1 DC DC DC 12 12 12 N 1 A A O3' O DC HOH 12 23 2.17 1_555 5_554 0.1420000 2.550 8.000 1089 1 2.000 TR isotropic TR isotropic 2.550 8.000 33 276 0 243 0 2.400 3.000 3.300 4.500 3.100 3.000 3.900 4.500 0.006 0.025 0.020 0.050 0.024 0.050 0.045 0.075 0.015 0.040 0.048 0.100 0.146 0.090 0.111 0.090 fix fix 2.550 117D 2008 1115 2.000 1 refinement NUCLSQ CRYSTAL AND MOLECULAR STRUCTURE OF THE ALTERNATING DODECAMER D(GCGTACGTACGC) IN THE A-DNA FORM: COMPARISON WITH THE ISOMORPHOUS NON-ALTERNATING DODECAMER D(CCGTACGTACGG) 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 12 A N3 DC 12 12_565 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 12 A O2 DC 12 12_565 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 12 A N4 DC 12 12_565 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 A DG 11 A N1 DG 11 12_565 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 A DG 11 A O6 DG 11 12_565 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 A DG 11 A N2 DG 11 12_565 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 A DC 10 A N3 DC 10 12_565 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 A DC 10 A O2 DC 10 12_565 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 A DC 10 A N4 DC 10 12_565 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 9 A N1 DA 9 12_565 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 9 A N6 DA 9 12_565 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 A DT 8 A N3 DT 8 12_565 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 A DT 8 A O4 DT 8 12_565 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 7 A N1 DG 7 12_565 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 7 A O6 DG 7 12_565 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 7 A N2 DG 7 12_565 hydrog WATSON-CRICK A DG 7 A N1 DG 7 1_555 A DC 6 A N3 DC 6 12_565 hydrog WATSON-CRICK A DG 7 A N2 DG 7 1_555 A DC 6 A O2 DC 6 12_565 hydrog WATSON-CRICK A DG 7 A O6 DG 7 1_555 A DC 6 A N4 DC 6 12_565 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 A DA 5 A N1 DA 5 12_565 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 A DA 5 A N6 DA 5 12_565 hydrog WATSON-CRICK A DA 9 A N1 DA 9 1_555 A DT 4 A N3 DT 4 12_565 hydrog WATSON-CRICK A DA 9 A N6 DA 9 1_555 A DT 4 A O4 DT 4 12_565 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 A DG 3 A N1 DG 3 12_565 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 A DG 3 A O6 DG 3 12_565 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 A DG 3 A N2 DG 3 12_565 hydrog WATSON-CRICK A DG 11 A N1 DG 11 1_555 A DC 2 A N3 DC 2 12_565 hydrog WATSON-CRICK A DG 11 A N2 DG 11 1_555 A DC 2 A O2 DC 2 12_565 hydrog WATSON-CRICK A DG 11 A O6 DG 11 1_555 A DC 2 A N4 DC 2 12_565 hydrog WATSON-CRICK A DC 12 A N3 DC 12 1_555 A DG 1 A N1 DG 1 12_565 hydrog WATSON-CRICK A DC 12 A N4 DC 12 1_555 A DG 1 A O6 DG 1 12_565 hydrog WATSON-CRICK A DC 12 A O2 DC 12 1_555 A DG 1 A N2 DG 1 12_565 DNA A-DNA, DOUBLE HELIX, DNA 117D PDB 1 117D 1 12 117D 1 12 117D A 1 1 12 178 P 61 2 2