data_117D # _entry.id 117D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.367 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 117D pdb_0000117d 10.2210/pdb117d/pdb RCSB ADL046 ? ? WWPDB D_1000170044 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 117D _pdbx_database_status.recvd_initial_deposition_date 1993-02-10 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bingman, C.A.' 1 ? 'Jain, S.' 2 ? 'Zon, G.' 3 ? 'Sundaralingam, M.' 4 ? # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal and molecular structure of the alternating dodecamer d(GCGTACGTACGC) in the A-DNA form: comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG). ; 'Nucleic Acids Res.' 20 6637 6647 1992 NARHAD UK 0305-1048 0389 ? 1480485 10.1093/nar/20.24.6637 1 'Crystal and Molecular Structure of the A-DNA Dodecamer d(CCGTACGTACGG): Choice of Fragment Helical Axis' J.Mol.Biol. 227 738 756 1992 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bingman, C.A.' 1 ? primary 'Jain, S.' 2 ? primary 'Zon, G.' 3 ? primary 'Sundaralingam, M.' 4 ? 1 'Bingman, C.A.' 5 ? 1 'Zon, G.' 6 ? 1 'Sundaralingam, M.' 7 ? # _cell.entry_id 117D _cell.length_a 46.200 _cell.length_b 46.200 _cell.length_c 71.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 117D _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*C)-3') ; 3663.392 1 ? ? ? ? 2 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(DA)(DC)(DG)(DT)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTACGTACGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DG n 1 8 DT n 1 9 DA n 1 10 DC n 1 11 DG n 1 12 DC n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 117D _struct_ref.pdbx_db_accession 117D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 117D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 117D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 117D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_percent_sol 59.09 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 1 '[CO(NH3)6]3+' ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 PROPANOL ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'OSCILLATION CAMERA' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-6' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 117D _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.550 _reflns.number_obs 1115 _reflns.number_all 2008 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _refine.entry_id 117D _refine.ls_number_reflns_obs 1089 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.550 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1420000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 243 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 276 _refine_hist.d_res_high 2.550 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it 2.400 3.000 ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 3.300 4.500 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it 3.100 3.000 ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 3.900 4.500 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d 0.006 0.025 ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d 0.020 0.050 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.024 0.050 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.045 0.075 ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.015 0.040 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.048 0.100 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.146 0.090 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.111 0.090 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 117D _struct.title ;CRYSTAL AND MOLECULAR STRUCTURE OF THE ALTERNATING DODECAMER D(GCGTACGTACGC) IN THE A-DNA FORM: COMPARISON WITH THE ISOMORPHOUS NON-ALTERNATING DODECAMER D(CCGTACGTACGG) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 117D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 12 N3 ? ? A DG 1 A DC 12 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 12 O2 ? ? A DG 1 A DC 12 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 12 N4 ? ? A DG 1 A DC 12 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 11 N1 ? ? A DC 2 A DG 11 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 11 O6 ? ? A DC 2 A DG 11 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 11 N2 ? ? A DC 2 A DG 11 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 10 N3 ? ? A DG 3 A DC 10 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 10 O2 ? ? A DG 3 A DC 10 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 10 N4 ? ? A DG 3 A DC 10 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 9 N1 ? ? A DT 4 A DA 9 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 4 A DA 9 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 5 A DT 8 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 5 A DT 8 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 6 A DG 7 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 6 A DG 7 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 6 A DG 7 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 7 A DC 6 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 7 A DC 6 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 7 A DC 6 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 8 A DA 5 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 8 A DA 5 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 9 A DT 4 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 9 A DT 4 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 10 A DG 3 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 10 A DG 3 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 10 A DG 3 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 11 A DC 2 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 11 A DC 2 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 11 A DC 2 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 12 A DG 1 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 12 A DG 1 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 12 A DG 1 12_565 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 117D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 117D _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0.012497 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024994 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013986 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? -5.902 41.135 6.421 1.00 44.09 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? -4.742 40.358 5.999 1.00 36.90 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? -3.587 40.743 6.900 1.00 34.49 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? -4.029 41.475 8.022 1.00 35.32 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? -2.823 39.546 7.443 1.00 31.86 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? -1.749 39.166 6.571 1.00 30.31 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? -2.342 40.010 8.802 1.00 32.60 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? -3.444 40.951 9.231 1.00 32.87 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? -4.431 40.218 10.046 1.00 32.08 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? -5.763 40.006 9.767 1.00 33.09 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? -6.387 39.310 10.689 1.00 33.47 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? -5.394 39.054 11.640 1.00 31.51 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? -5.435 38.350 12.870 1.00 30.00 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? -6.396 37.790 13.399 1.00 29.34 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? -4.244 38.318 13.542 1.00 28.22 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? -3.116 38.902 13.056 1.00 30.26 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? -2.019 38.786 13.814 1.00 27.40 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? -3.022 39.562 11.898 1.00 31.99 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? -4.197 39.606 11.254 1.00 30.93 ? 1 DG A C4 1 ATOM 20 P P . DC A 1 2 ? -2.141 37.822 5.677 1.00 30.40 ? 2 DC A P 1 ATOM 21 O OP1 . DC A 1 2 ? -1.603 38.138 4.362 1.00 25.40 ? 2 DC A OP1 1 ATOM 22 O OP2 . DC A 1 2 ? -3.617 37.706 5.834 1.00 29.46 ? 2 DC A OP2 1 ATOM 23 O "O5'" . DC A 1 2 ? -1.245 36.742 6.521 1.00 28.09 ? 2 DC A "O5'" 1 ATOM 24 C "C5'" . DC A 1 2 ? 0.099 37.270 6.728 1.00 25.33 ? 2 DC A "C5'" 1 ATOM 25 C "C4'" . DC A 1 2 ? 0.499 37.114 8.172 1.00 21.89 ? 2 DC A "C4'" 1 ATOM 26 O "O4'" . DC A 1 2 ? -0.441 37.694 9.059 1.00 20.04 ? 2 DC A "O4'" 1 ATOM 27 C "C3'" . DC A 1 2 ? 0.580 35.669 8.637 1.00 21.56 ? 2 DC A "C3'" 1 ATOM 28 O "O3'" . DC A 1 2 ? 1.749 34.997 8.180 1.00 23.79 ? 2 DC A "O3'" 1 ATOM 29 C "C2'" . DC A 1 2 ? 0.543 35.805 10.160 1.00 19.42 ? 2 DC A "C2'" 1 ATOM 30 C "C1'" . DC A 1 2 ? -0.457 36.930 10.289 1.00 21.53 ? 2 DC A "C1'" 1 ATOM 31 N N1 . DC A 1 2 ? -1.793 36.369 10.553 1.00 22.83 ? 2 DC A N1 1 ATOM 32 C C2 . DC A 1 2 ? -1.957 35.693 11.755 1.00 22.67 ? 2 DC A C2 1 ATOM 33 O O2 . DC A 1 2 ? -1.016 35.513 12.520 1.00 22.43 ? 2 DC A O2 1 ATOM 34 N N3 . DC A 1 2 ? -3.213 35.237 12.055 1.00 21.21 ? 2 DC A N3 1 ATOM 35 C C4 . DC A 1 2 ? -4.262 35.429 11.211 1.00 21.13 ? 2 DC A C4 1 ATOM 36 N N4 . DC A 1 2 ? -5.452 34.929 11.540 1.00 22.38 ? 2 DC A N4 1 ATOM 37 C C5 . DC A 1 2 ? -4.068 36.117 9.981 1.00 19.57 ? 2 DC A C5 1 ATOM 38 C C6 . DC A 1 2 ? -2.839 36.557 9.703 1.00 18.68 ? 2 DC A C6 1 ATOM 39 P P . DG A 1 3 ? 1.326 33.465 7.815 1.00 26.88 ? 3 DG A P 1 ATOM 40 O OP1 . DG A 1 3 ? 2.261 33.165 6.735 1.00 25.06 ? 3 DG A OP1 1 ATOM 41 O OP2 . DG A 1 3 ? -0.120 33.497 7.343 1.00 27.76 ? 3 DG A OP2 1 ATOM 42 O "O5'" . DG A 1 3 ? 1.432 32.808 9.245 1.00 21.78 ? 3 DG A "O5'" 1 ATOM 43 C "C5'" . DG A 1 3 ? 2.726 32.864 9.903 1.00 22.99 ? 3 DG A "C5'" 1 ATOM 44 C "C4'" . DG A 1 3 ? 2.437 32.364 11.311 1.00 23.66 ? 3 DG A "C4'" 1 ATOM 45 O "O4'" . DG A 1 3 ? 1.273 33.013 11.769 1.00 24.60 ? 3 DG A "O4'" 1 ATOM 46 C "C3'" . DG A 1 3 ? 2.114 30.884 11.397 1.00 23.13 ? 3 DG A "C3'" 1 ATOM 47 O "O3'" . DG A 1 3 ? 3.287 30.068 11.512 1.00 24.19 ? 3 DG A "O3'" 1 ATOM 48 C "C2'" . DG A 1 3 ? 1.231 30.804 12.641 1.00 22.57 ? 3 DG A "C2'" 1 ATOM 49 C "C1'" . DG A 1 3 ? 0.534 32.140 12.648 1.00 22.96 ? 3 DG A "C1'" 1 ATOM 50 N N9 . DG A 1 3 ? -0.843 32.068 12.148 1.00 23.44 ? 3 DG A N9 1 ATOM 51 C C8 . DG A 1 3 ? -1.310 32.556 10.954 1.00 23.70 ? 3 DG A C8 1 ATOM 52 N N7 . DG A 1 3 ? -2.606 32.416 10.804 1.00 25.93 ? 3 DG A N7 1 ATOM 53 C C5 . DG A 1 3 ? -3.019 31.812 11.991 1.00 24.36 ? 3 DG A C5 1 ATOM 54 C C6 . DG A 1 3 ? -4.304 31.420 12.455 1.00 24.87 ? 3 DG A C6 1 ATOM 55 O O6 . DG A 1 3 ? -5.382 31.520 11.876 1.00 26.57 ? 3 DG A O6 1 ATOM 56 N N1 . DG A 1 3 ? -4.313 30.860 13.707 1.00 23.18 ? 3 DG A N1 1 ATOM 57 C C2 . DG A 1 3 ? -3.181 30.724 14.450 1.00 21.92 ? 3 DG A C2 1 ATOM 58 N N2 . DG A 1 3 ? -3.366 30.172 15.651 1.00 17.24 ? 3 DG A N2 1 ATOM 59 N N3 . DG A 1 3 ? -1.954 31.088 14.071 1.00 20.95 ? 3 DG A N3 1 ATOM 60 C C4 . DG A 1 3 ? -1.950 31.624 12.834 1.00 22.06 ? 3 DG A C4 1 ATOM 61 P P . DT A 1 4 ? 3.077 28.495 10.982 1.00 18.63 ? 4 DT A P 1 ATOM 62 O OP1 . DT A 1 4 ? 4.493 28.067 11.040 1.00 18.17 ? 4 DT A OP1 1 ATOM 63 O OP2 . DT A 1 4 ? 2.453 28.615 9.645 1.00 16.20 ? 4 DT A OP2 1 ATOM 64 O "O5'" . DT A 1 4 ? 2.109 27.899 12.083 1.00 17.32 ? 4 DT A "O5'" 1 ATOM 65 C "C5'" . DT A 1 4 ? 2.576 27.723 13.435 1.00 18.35 ? 4 DT A "C5'" 1 ATOM 66 C "C4'" . DT A 1 4 ? 1.499 26.979 14.186 1.00 16.72 ? 4 DT A "C4'" 1 ATOM 67 O "O4'" . DT A 1 4 ? 0.360 27.807 14.293 1.00 16.17 ? 4 DT A "O4'" 1 ATOM 68 C "C3'" . DT A 1 4 ? 0.940 25.723 13.542 1.00 18.85 ? 4 DT A "C3'" 1 ATOM 69 O "O3'" . DT A 1 4 ? 1.765 24.558 13.642 1.00 22.77 ? 4 DT A "O3'" 1 ATOM 70 C "C2'" . DT A 1 4 ? -0.367 25.563 14.321 1.00 16.91 ? 4 DT A "C2'" 1 ATOM 71 C "C1'" . DT A 1 4 ? -0.818 26.991 14.443 1.00 13.74 ? 4 DT A "C1'" 1 ATOM 72 N N1 . DT A 1 4 ? -1.772 27.355 13.392 1.00 10.18 ? 4 DT A N1 1 ATOM 73 C C2 . DT A 1 4 ? -3.116 27.147 13.628 1.00 14.51 ? 4 DT A C2 1 ATOM 74 O O2 . DT A 1 4 ? -3.527 26.643 14.672 1.00 12.94 ? 4 DT A O2 1 ATOM 75 N N3 . DT A 1 4 ? -3.992 27.511 12.641 1.00 16.79 ? 4 DT A N3 1 ATOM 76 C C4 . DT A 1 4 ? -3.608 28.071 11.469 1.00 15.50 ? 4 DT A C4 1 ATOM 77 O O4 . DT A 1 4 ? -4.493 28.395 10.639 1.00 16.55 ? 4 DT A O4 1 ATOM 78 C C5 . DT A 1 4 ? -2.208 28.247 11.240 1.00 14.11 ? 4 DT A C5 1 ATOM 79 C C7 . DT A 1 4 ? -1.737 28.855 9.953 1.00 11.56 ? 4 DT A C7 1 ATOM 80 C C6 . DT A 1 4 ? -1.354 27.879 12.198 1.00 12.35 ? 4 DT A C6 1 ATOM 81 P P . DA A 1 5 ? 1.402 23.234 12.720 1.00 22.17 ? 5 DA A P 1 ATOM 82 O OP1 . DA A 1 5 ? 2.728 22.586 12.899 1.00 25.75 ? 5 DA A OP1 1 ATOM 83 O OP2 . DA A 1 5 ? 1.060 23.754 11.354 1.00 21.78 ? 5 DA A OP2 1 ATOM 84 O "O5'" . DA A 1 5 ? 0.155 22.506 13.363 1.00 23.05 ? 5 DA A "O5'" 1 ATOM 85 C "C5'" . DA A 1 5 ? 0.136 22.154 14.765 1.00 20.55 ? 5 DA A "C5'" 1 ATOM 86 C "C4'" . DA A 1 5 ? -1.245 21.602 15.058 1.00 19.49 ? 5 DA A "C4'" 1 ATOM 87 O "O4'" . DA A 1 5 ? -2.155 22.674 15.101 1.00 19.79 ? 5 DA A "O4'" 1 ATOM 88 C "C3'" . DA A 1 5 ? -1.811 20.661 14.007 1.00 23.13 ? 5 DA A "C3'" 1 ATOM 89 O "O3'" . DA A 1 5 ? -1.423 19.293 14.143 1.00 26.88 ? 5 DA A "O3'" 1 ATOM 90 C "C2'" . DA A 1 5 ? -3.315 20.817 14.221 1.00 23.73 ? 5 DA A "C2'" 1 ATOM 91 C "C1'" . DA A 1 5 ? -3.400 22.302 14.486 1.00 20.50 ? 5 DA A "C1'" 1 ATOM 92 N N9 . DA A 1 5 ? -3.657 23.042 13.235 1.00 18.39 ? 5 DA A N9 1 ATOM 93 C C8 . DA A 1 5 ? -2.791 23.582 12.327 1.00 15.98 ? 5 DA A C8 1 ATOM 94 N N7 . DA A 1 5 ? -3.396 24.214 11.347 1.00 17.26 ? 5 DA A N7 1 ATOM 95 C C5 . DA A 1 5 ? -4.747 24.098 11.633 1.00 18.35 ? 5 DA A C5 1 ATOM 96 C C6 . DA A 1 5 ? -5.911 24.554 10.968 1.00 19.08 ? 5 DA A C6 1 ATOM 97 N N6 . DA A 1 5 ? -5.946 25.255 9.838 1.00 19.63 ? 5 DA A N6 1 ATOM 98 N N1 . DA A 1 5 ? -7.103 24.234 11.562 1.00 15.29 ? 5 DA A N1 1 ATOM 99 C C2 . DA A 1 5 ? -7.136 23.522 12.720 1.00 18.00 ? 5 DA A C2 1 ATOM 100 N N3 . DA A 1 5 ? -6.085 23.054 13.399 1.00 18.99 ? 5 DA A N3 1 ATOM 101 C C4 . DA A 1 5 ? -4.923 23.378 12.791 1.00 18.00 ? 5 DA A C4 1 ATOM 102 P P . DC A 1 6 ? -1.543 18.389 12.791 1.00 28.31 ? 6 DC A P 1 ATOM 103 O OP1 . DC A 1 6 ? -0.940 17.128 13.192 1.00 30.22 ? 6 DC A OP1 1 ATOM 104 O OP2 . DC A 1 6 ? -1.046 19.233 11.676 1.00 31.17 ? 6 DC A OP2 1 ATOM 105 O "O5'" . DC A 1 6 ? -3.107 18.193 12.648 1.00 29.72 ? 6 DC A "O5'" 1 ATOM 106 C "C5'" . DC A 1 6 ? -3.687 17.020 13.292 1.00 29.23 ? 6 DC A "C5'" 1 ATOM 107 C "C4'" . DC A 1 6 ? -5.156 17.164 12.927 1.00 27.49 ? 6 DC A "C4'" 1 ATOM 108 O "O4'" . DC A 1 6 ? -5.530 18.517 13.077 1.00 24.79 ? 6 DC A "O4'" 1 ATOM 109 C "C3'" . DC A 1 6 ? -5.445 16.848 11.469 1.00 25.89 ? 6 DC A "C3'" 1 ATOM 110 O "O3'" . DC A 1 6 ? -5.509 15.448 11.190 1.00 28.52 ? 6 DC A "O3'" 1 ATOM 111 C "C2'" . DC A 1 6 ? -6.771 17.577 11.283 1.00 23.86 ? 6 DC A "C2'" 1 ATOM 112 C "C1'" . DC A 1 6 ? -6.463 18.861 12.041 1.00 23.69 ? 6 DC A "C1'" 1 ATOM 113 N N1 . DC A 1 6 ? -5.927 19.837 11.083 1.00 21.79 ? 6 DC A N1 1 ATOM 114 C C2 . DC A 1 6 ? -6.898 20.533 10.375 1.00 21.19 ? 6 DC A C2 1 ATOM 115 O O2 . DC A 1 6 ? -8.097 20.353 10.561 1.00 19.30 ? 6 DC A O2 1 ATOM 116 N N3 . DC A 1 6 ? -6.477 21.462 9.452 1.00 23.95 ? 6 DC A N3 1 ATOM 117 C C4 . DC A 1 6 ? -5.158 21.722 9.245 1.00 22.56 ? 6 DC A C4 1 ATOM 118 N N4 . DC A 1 6 ? -4.812 22.642 8.351 1.00 22.68 ? 6 DC A N4 1 ATOM 119 C C5 . DC A 1 6 ? -4.177 20.989 9.967 1.00 22.60 ? 6 DC A C5 1 ATOM 120 C C6 . DC A 1 6 ? -4.611 20.085 10.868 1.00 23.48 ? 6 DC A C6 1 ATOM 121 P P . DG A 1 7 ? -4.969 14.944 9.767 1.00 29.97 ? 7 DG A P 1 ATOM 122 O OP1 . DG A 1 7 ? -4.625 13.523 10.024 1.00 32.24 ? 7 DG A OP1 1 ATOM 123 O OP2 . DG A 1 7 ? -3.770 15.716 9.281 1.00 29.23 ? 7 DG A OP2 1 ATOM 124 O "O5'" . DG A 1 7 ? -6.207 15.224 8.809 1.00 29.87 ? 7 DG A "O5'" 1 ATOM 125 C "C5'" . DG A 1 7 ? -7.443 14.484 8.880 1.00 25.39 ? 7 DG A "C5'" 1 ATOM 126 C "C4'" . DG A 1 7 ? -8.427 15.148 7.937 1.00 23.89 ? 7 DG A "C4'" 1 ATOM 127 O "O4'" . DG A 1 7 ? -8.505 16.540 8.187 1.00 24.60 ? 7 DG A "O4'" 1 ATOM 128 C "C3'" . DG A 1 7 ? -8.071 15.060 6.464 1.00 20.66 ? 7 DG A "C3'" 1 ATOM 129 O "O3'" . DG A 1 7 ? -8.390 13.788 5.906 1.00 22.99 ? 7 DG A "O3'" 1 ATOM 130 C "C2'" . DG A 1 7 ? -8.894 16.180 5.856 1.00 17.76 ? 7 DG A "C2'" 1 ATOM 131 C "C1'" . DG A 1 7 ? -8.884 17.204 6.964 1.00 20.79 ? 7 DG A "C1'" 1 ATOM 132 N N9 . DG A 1 7 ? -7.912 18.265 6.657 1.00 20.26 ? 7 DG A N9 1 ATOM 133 C C8 . DG A 1 7 ? -6.678 18.465 7.222 1.00 18.50 ? 7 DG A C8 1 ATOM 134 N N7 . DG A 1 7 ? -6.057 19.517 6.757 1.00 18.23 ? 7 DG A N7 1 ATOM 135 C C5 . DG A 1 7 ? -6.942 20.041 5.813 1.00 18.94 ? 7 DG A C5 1 ATOM 136 C C6 . DG A 1 7 ? -6.842 21.165 4.948 1.00 20.07 ? 7 DG A C6 1 ATOM 137 O O6 . DG A 1 7 ? -5.904 21.958 4.841 1.00 20.67 ? 7 DG A O6 1 ATOM 138 N N1 . DG A 1 7 ? -7.946 21.358 4.154 1.00 20.12 ? 7 DG A N1 1 ATOM 139 C C2 . DG A 1 7 ? -9.030 20.529 4.176 1.00 17.85 ? 7 DG A C2 1 ATOM 140 N N2 . DG A 1 7 ? -10.016 20.853 3.339 1.00 15.33 ? 7 DG A N2 1 ATOM 141 N N3 . DG A 1 7 ? -9.171 19.453 4.955 1.00 18.14 ? 7 DG A N3 1 ATOM 142 C C4 . DG A 1 7 ? -8.090 19.277 5.741 1.00 19.34 ? 7 DG A C4 1 ATOM 143 P P . DT A 1 8 ? -7.274 13.111 4.969 1.00 21.60 ? 8 DT A P 1 ATOM 144 O OP1 . DT A 1 8 ? -7.406 11.683 5.277 1.00 19.22 ? 8 DT A OP1 1 ATOM 145 O OP2 . DT A 1 8 ? -5.921 13.656 5.270 1.00 22.77 ? 8 DT A OP2 1 ATOM 146 O "O5'" . DT A 1 8 ? -7.725 13.636 3.511 1.00 22.80 ? 8 DT A "O5'" 1 ATOM 147 C "C5'" . DT A 1 8 ? -9.118 13.592 3.146 1.00 20.53 ? 8 DT A "C5'" 1 ATOM 148 C "C4'" . DT A 1 8 ? -9.312 14.480 1.938 1.00 21.46 ? 8 DT A "C4'" 1 ATOM 149 O "O4'" . DT A 1 8 ? -9.319 15.828 2.381 1.00 21.19 ? 8 DT A "O4'" 1 ATOM 150 C "C3'" . DT A 1 8 ? -8.247 14.420 0.858 1.00 21.91 ? 8 DT A "C3'" 1 ATOM 151 O "O3'" . DT A 1 8 ? -8.395 13.347 -0.086 1.00 24.21 ? 8 DT A "O3'" 1 ATOM 152 C "C2'" . DT A 1 8 ? -8.406 15.776 0.179 1.00 18.26 ? 8 DT A "C2'" 1 ATOM 153 C "C1'" . DT A 1 8 ? -8.760 16.668 1.351 1.00 20.05 ? 8 DT A "C1'" 1 ATOM 154 N N1 . DT A 1 8 ? -7.568 17.364 1.859 1.00 17.16 ? 8 DT A N1 1 ATOM 155 C C2 . DT A 1 8 ? -7.240 18.549 1.223 1.00 16.75 ? 8 DT A C2 1 ATOM 156 O O2 . DT A 1 8 ? -7.889 18.977 0.272 1.00 19.69 ? 8 DT A O2 1 ATOM 157 N N3 . DT A 1 8 ? -6.152 19.233 1.673 1.00 16.24 ? 8 DT A N3 1 ATOM 158 C C4 . DT A 1 8 ? -5.398 18.777 2.717 1.00 17.40 ? 8 DT A C4 1 ATOM 159 O O4 . DT A 1 8 ? -4.417 19.501 3.032 1.00 20.94 ? 8 DT A O4 1 ATOM 160 C C5 . DT A 1 8 ? -5.754 17.561 3.360 1.00 17.46 ? 8 DT A C5 1 ATOM 161 C C7 . DT A 1 8 ? -4.941 17.032 4.519 1.00 14.75 ? 8 DT A C7 1 ATOM 162 C C6 . DT A 1 8 ? -6.845 16.912 2.924 1.00 17.30 ? 8 DT A C6 1 ATOM 163 P P . DA A 1 9 ? -7.119 13.019 -1.044 1.00 27.37 ? 9 DA A P 1 ATOM 164 O OP1 . DA A 1 9 ? -7.540 11.803 -1.737 1.00 31.45 ? 9 DA A OP1 1 ATOM 165 O OP2 . DA A 1 9 ? -5.874 12.783 -0.214 1.00 30.42 ? 9 DA A OP2 1 ATOM 166 O "O5'" . DA A 1 9 ? -6.939 14.308 -1.966 1.00 24.08 ? 9 DA A "O5'" 1 ATOM 167 C "C5'" . DA A 1 9 ? -8.097 14.632 -2.781 1.00 24.00 ? 9 DA A "C5'" 1 ATOM 168 C "C4'" . DA A 1 9 ? -7.688 15.756 -3.704 1.00 21.67 ? 9 DA A "C4'" 1 ATOM 169 O "O4'" . DA A 1 9 ? -7.614 16.948 -2.960 1.00 24.44 ? 9 DA A "O4'" 1 ATOM 170 C "C3'" . DA A 1 9 ? -6.329 15.588 -4.354 1.00 23.84 ? 9 DA A "C3'" 1 ATOM 171 O "O3'" . DA A 1 9 ? -6.389 14.836 -5.577 1.00 24.40 ? 9 DA A "O3'" 1 ATOM 172 C "C2'" . DA A 1 9 ? -5.856 17.024 -4.540 1.00 20.08 ? 9 DA A "C2'" 1 ATOM 173 C "C1'" . DA A 1 9 ? -6.477 17.725 -3.360 1.00 17.79 ? 9 DA A "C1'" 1 ATOM 174 N N9 . DA A 1 9 ? -5.539 17.837 -2.238 1.00 19.21 ? 9 DA A N9 1 ATOM 175 C C8 . DA A 1 9 ? -5.297 16.984 -1.194 1.00 18.72 ? 9 DA A C8 1 ATOM 176 N N7 . DA A 1 9 ? -4.375 17.413 -0.357 1.00 17.16 ? 9 DA A N7 1 ATOM 177 C C5 . DA A 1 9 ? -3.980 18.633 -0.894 1.00 15.59 ? 9 DA A C5 1 ATOM 178 C C6 . DA A 1 9 ? -3.035 19.581 -0.472 1.00 16.56 ? 9 DA A C6 1 ATOM 179 N N6 . DA A 1 9 ? -2.287 19.509 0.622 1.00 16.62 ? 9 DA A N6 1 ATOM 180 N N1 . DA A 1 9 ? -2.934 20.677 -1.287 1.00 18.52 ? 9 DA A N1 1 ATOM 181 C C2 . DA A 1 9 ? -3.680 20.849 -2.402 1.00 18.87 ? 9 DA A C2 1 ATOM 182 N N3 . DA A 1 9 ? -4.602 19.997 -2.853 1.00 18.42 ? 9 DA A N3 1 ATOM 183 C C4 . DA A 1 9 ? -4.694 18.917 -2.038 1.00 20.06 ? 9 DA A C4 1 ATOM 184 P P . DC A 1 10 ? -4.946 14.440 -6.192 1.00 21.39 ? 10 DC A P 1 ATOM 185 O OP1 . DC A 1 10 ? -5.234 13.836 -7.507 1.00 26.63 ? 10 DC A OP1 1 ATOM 186 O OP2 . DC A 1 10 ? -4.137 13.624 -5.270 1.00 19.53 ? 10 DC A OP2 1 ATOM 187 O "O5'" . DC A 1 10 ? -4.290 15.904 -6.328 1.00 23.55 ? 10 DC A "O5'" 1 ATOM 188 C "C5'" . DC A 1 10 ? -4.008 16.296 -7.701 1.00 22.33 ? 10 DC A "C5'" 1 ATOM 189 C "C4'" . DC A 1 10 ? -3.430 17.689 -7.608 1.00 16.94 ? 10 DC A "C4'" 1 ATOM 190 O "O4'" . DC A 1 10 ? -3.703 18.249 -6.342 1.00 17.57 ? 10 DC A "O4'" 1 ATOM 191 C "C3'" . DC A 1 10 ? -1.917 17.725 -7.722 1.00 16.61 ? 10 DC A "C3'" 1 ATOM 192 O "O3'" . DC A 1 10 ? -1.529 17.653 -9.095 1.00 21.01 ? 10 DC A "O3'" 1 ATOM 193 C "C2'" . DC A 1 10 ? -1.571 19.045 -7.050 1.00 13.68 ? 10 DC A "C2'" 1 ATOM 194 C "C1'" . DC A 1 10 ? -2.633 19.125 -5.977 1.00 13.84 ? 10 DC A "C1'" 1 ATOM 195 N N1 . DC A 1 10 ? -2.035 18.673 -4.712 1.00 15.66 ? 10 DC A N1 1 ATOM 196 C C2 . DC A 1 10 ? -1.051 19.497 -4.197 1.00 16.99 ? 10 DC A C2 1 ATOM 197 O O2 . DC A 1 10 ? -0.753 20.549 -4.755 1.00 17.61 ? 10 DC A O2 1 ATOM 198 N N3 . DC A 1 10 ? -0.444 19.101 -3.039 1.00 16.68 ? 10 DC A N3 1 ATOM 199 C C4 . DC A 1 10 ? -0.783 17.929 -2.431 1.00 16.15 ? 10 DC A C4 1 ATOM 200 N N4 . DC A 1 10 ? -0.139 17.637 -1.301 1.00 19.25 ? 10 DC A N4 1 ATOM 201 C C5 . DC A 1 10 ? -1.797 17.100 -2.967 1.00 13.52 ? 10 DC A C5 1 ATOM 202 C C6 . DC A 1 10 ? -2.382 17.497 -4.111 1.00 14.93 ? 10 DC A C6 1 ATOM 203 P P . DG A 1 11 ? -0.120 16.956 -9.445 1.00 23.50 ? 11 DG A P 1 ATOM 204 O OP1 . DG A 1 11 ? -0.360 16.644 -10.868 1.00 22.27 ? 11 DG A OP1 1 ATOM 205 O OP2 . DG A 1 11 ? 0.206 15.872 -8.501 1.00 24.51 ? 11 DG A OP2 1 ATOM 206 O "O5'" . DG A 1 11 ? 0.940 18.169 -9.216 1.00 26.68 ? 11 DG A "O5'" 1 ATOM 207 C "C5'" . DG A 1 11 ? 0.799 19.381 -10.010 1.00 22.75 ? 11 DG A "C5'" 1 ATOM 208 C "C4'" . DG A 1 11 ? 1.864 20.313 -9.488 1.00 21.91 ? 11 DG A "C4'" 1 ATOM 209 O "O4'" . DG A 1 11 ? 1.545 20.729 -8.180 1.00 21.53 ? 11 DG A "O4'" 1 ATOM 210 C "C3'" . DG A 1 11 ? 3.241 19.649 -9.359 1.00 20.76 ? 11 DG A "C3'" 1 ATOM 211 O "O3'" . DG A 1 11 ? 3.890 19.589 -10.618 1.00 19.87 ? 11 DG A "O3'" 1 ATOM 212 C "C2'" . DG A 1 11 ? 3.918 20.549 -8.330 1.00 20.36 ? 11 DG A "C2'" 1 ATOM 213 C "C1'" . DG A 1 11 ? 2.760 20.865 -7.400 1.00 20.98 ? 11 DG A "C1'" 1 ATOM 214 N N9 . DG A 1 11 ? 2.742 19.921 -6.278 1.00 21.56 ? 11 DG A N9 1 ATOM 215 C C8 . DG A 1 11 ? 2.005 18.765 -6.163 1.00 21.58 ? 11 DG A C8 1 ATOM 216 N N7 . DG A 1 11 ? 2.208 18.101 -5.055 1.00 19.24 ? 11 DG A N7 1 ATOM 217 C C5 . DG A 1 11 ? 3.114 18.901 -4.362 1.00 18.95 ? 11 DG A C5 1 ATOM 218 C C6 . DG A 1 11 ? 3.724 18.741 -3.096 1.00 18.73 ? 11 DG A C6 1 ATOM 219 O O6 . DG A 1 11 ? 3.527 17.817 -2.309 1.00 22.35 ? 11 DG A O6 1 ATOM 220 N N1 . DG A 1 11 ? 4.608 19.729 -2.760 1.00 21.42 ? 11 DG A N1 1 ATOM 221 C C2 . DG A 1 11 ? 4.867 20.793 -3.575 1.00 24.65 ? 11 DG A C2 1 ATOM 222 N N2 . DG A 1 11 ? 5.750 21.682 -3.103 1.00 22.25 ? 11 DG A N2 1 ATOM 223 N N3 . DG A 1 11 ? 4.315 21.005 -4.776 1.00 23.96 ? 11 DG A N3 1 ATOM 224 C C4 . DG A 1 11 ? 3.453 20.017 -5.105 1.00 21.81 ? 11 DG A C4 1 ATOM 225 P P . DC A 1 12 ? 5.100 18.581 -10.889 1.00 19.68 ? 12 DC A P 1 ATOM 226 O OP1 . DC A 1 12 ? 5.301 18.801 -12.355 1.00 19.87 ? 12 DC A OP1 1 ATOM 227 O OP2 . DC A 1 12 ? 4.846 17.140 -10.568 1.00 12.81 ? 12 DC A OP2 1 ATOM 228 O "O5'" . DC A 1 12 ? 6.225 19.209 -9.996 1.00 15.78 ? 12 DC A "O5'" 1 ATOM 229 C "C5'" . DC A 1 12 ? 7.087 20.285 -10.432 1.00 15.27 ? 12 DC A "C5'" 1 ATOM 230 C "C4'" . DC A 1 12 ? 8.023 20.505 -9.252 1.00 19.67 ? 12 DC A "C4'" 1 ATOM 231 O "O4'" . DC A 1 12 ? 7.295 20.613 -8.044 1.00 19.92 ? 12 DC A "O4'" 1 ATOM 232 C "C3'" . DC A 1 12 ? 8.997 19.345 -9.023 1.00 17.72 ? 12 DC A "C3'" 1 ATOM 233 O "O3'" . DC A 1 12 ? 10.102 19.409 -9.917 1.00 22.15 ? 12 DC A "O3'" 1 ATOM 234 C "C2'" . DC A 1 12 ? 9.342 19.533 -7.550 1.00 16.71 ? 12 DC A "C2'" 1 ATOM 235 C "C1'" . DC A 1 12 ? 8.023 20.001 -6.971 1.00 16.11 ? 12 DC A "C1'" 1 ATOM 236 N N1 . DC A 1 12 ? 7.293 18.881 -6.342 1.00 16.26 ? 12 DC A N1 1 ATOM 237 C C2 . DC A 1 12 ? 7.605 18.685 -5.005 1.00 16.62 ? 12 DC A C2 1 ATOM 238 O O2 . DC A 1 12 ? 8.457 19.377 -4.454 1.00 14.55 ? 12 DC A O2 1 ATOM 239 N N3 . DC A 1 12 ? 6.953 17.693 -4.319 1.00 17.54 ? 12 DC A N3 1 ATOM 240 C C4 . DC A 1 12 ? 6.027 16.904 -4.926 1.00 16.27 ? 12 DC A C4 1 ATOM 241 N N4 . DC A 1 12 ? 5.447 15.940 -4.219 1.00 15.89 ? 12 DC A N4 1 ATOM 242 C C5 . DC A 1 12 ? 5.690 17.128 -6.292 1.00 14.10 ? 12 DC A C5 1 ATOM 243 C C6 . DC A 1 12 ? 6.339 18.117 -6.936 1.00 14.96 ? 12 DC A C6 1 HETATM 244 O O . HOH B 2 . ? 0.081 40.150 4.783 1.00 37.77 ? 13 HOH A O 1 HETATM 245 O O . HOH B 2 . ? -6.533 38.554 5.076 1.00 62.54 ? 14 HOH A O 1 HETATM 246 O O . HOH B 2 . ? -9.774 38.326 12.284 1.00 56.00 ? 15 HOH A O 1 HETATM 247 O O . HOH B 2 . ? -3.791 33.269 8.501 1.00 66.07 ? 16 HOH A O 1 HETATM 248 O O . HOH B 2 . ? -5.976 30.956 9.338 1.00 88.10 ? 17 HOH A O 1 HETATM 249 O O . HOH B 2 . ? -2.231 25.110 9.216 1.00 25.00 ? 18 HOH A O 1 HETATM 250 O O . HOH B 2 . ? -0.903 21.922 9.502 1.00 29.81 ? 19 HOH A O 1 HETATM 251 O O . HOH B 2 . ? -6.882 20.681 15.308 1.00 29.93 ? 20 HOH A O 1 HETATM 252 O O . HOH B 2 . ? 0.748 31.064 15.401 1.00 29.14 ? 21 HOH A O 1 HETATM 253 O O . HOH B 2 . ? -3.405 15.628 1.022 1.00 33.11 ? 22 HOH A O 1 HETATM 254 O O . HOH B 2 . ? -11.183 17.497 0.136 1.00 9.29 ? 23 HOH A O 1 HETATM 255 O O . HOH B 2 . ? -1.176 34.213 4.004 1.00 59.81 ? 24 HOH A O 1 HETATM 256 O O . HOH B 2 . ? 2.435 18.221 -14.023 1.00 32.21 ? 25 HOH A O 1 HETATM 257 O O . HOH B 2 . ? 0.545 25.951 9.402 1.00 47.75 ? 26 HOH A O 1 HETATM 258 O O . HOH B 2 . ? -3.587 25.875 17.060 1.00 24.62 ? 27 HOH A O 1 HETATM 259 O O . HOH B 2 . ? -0.668 14.440 10.317 1.00 64.63 ? 28 HOH A O 1 HETATM 260 O O . HOH B 2 . ? -4.380 13.828 13.649 1.00 57.92 ? 29 HOH A O 1 HETATM 261 O O . HOH B 2 . ? 2.968 14.736 -12.763 1.00 32.74 ? 30 HOH A O 1 HETATM 262 O O . HOH B 2 . ? -3.308 13.628 -2.031 1.00 35.01 ? 31 HOH A O 1 HETATM 263 O O . HOH B 2 . ? -1.106 13.752 -5.598 1.00 61.15 ? 32 HOH A O 1 HETATM 264 O O . HOH B 2 . ? -2.432 18.209 -12.462 1.00 30.57 ? 33 HOH A O 1 HETATM 265 O O . HOH B 2 . ? 3.671 15.624 -8.158 1.00 14.51 ? 34 HOH A O 1 HETATM 266 O O . HOH B 2 . ? -3.065 34.805 5.963 1.00 63.17 ? 35 HOH A O 1 HETATM 267 O O . HOH B 2 . ? 6.341 27.715 13.149 1.00 23.41 ? 36 HOH A O 1 HETATM 268 O O . HOH B 2 . ? -2.557 20.465 5.184 1.00 57.49 ? 37 HOH A O 1 HETATM 269 O O . HOH B 2 . ? -3.102 19.313 7.600 1.00 68.46 ? 38 HOH A O 1 HETATM 270 O O . HOH B 2 . ? -5.613 18.365 16.681 1.00 71.08 ? 39 HOH A O 1 HETATM 271 O O . HOH B 2 . ? 0.268 15.044 0.050 1.00 75.53 ? 40 HOH A O 1 HETATM 272 O O . HOH B 2 . ? 1.693 15.752 -4.583 1.00 49.34 ? 41 HOH A O 1 HETATM 273 O O . HOH B 2 . ? -6.403 19.253 -5.656 1.00 83.24 ? 42 HOH A O 1 HETATM 274 O O . HOH B 2 . ? 1.319 23.962 -5.784 1.00 29.74 ? 43 HOH A O 1 HETATM 275 O O . HOH B 2 . ? 4.371 13.980 -5.470 1.00 19.55 ? 44 HOH A O 1 HETATM 276 O O . HOH B 2 . ? 4.224 37.438 8.546 1.00 47.45 ? 45 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DC 12 12 12 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 13 13 HOH HOH A . B 2 HOH 2 14 14 HOH HOH A . B 2 HOH 3 15 15 HOH HOH A . B 2 HOH 4 16 16 HOH HOH A . B 2 HOH 5 17 17 HOH HOH A . B 2 HOH 6 18 18 HOH HOH A . B 2 HOH 7 19 19 HOH HOH A . B 2 HOH 8 20 20 HOH HOH A . B 2 HOH 9 21 21 HOH HOH A . B 2 HOH 10 22 22 HOH HOH A . B 2 HOH 11 23 23 HOH HOH A . B 2 HOH 12 24 24 HOH HOH A . B 2 HOH 13 25 25 HOH HOH A . B 2 HOH 14 26 26 HOH HOH A . B 2 HOH 15 27 27 HOH HOH A . B 2 HOH 16 28 28 HOH HOH A . B 2 HOH 17 29 29 HOH HOH A . B 2 HOH 18 30 30 HOH HOH A . B 2 HOH 19 31 31 HOH HOH A . B 2 HOH 20 32 32 HOH HOH A . B 2 HOH 21 33 33 HOH HOH A . B 2 HOH 22 34 34 HOH HOH A . B 2 HOH 23 35 35 HOH HOH A . B 2 HOH 24 36 36 HOH HOH A . B 2 HOH 25 37 37 HOH HOH A . B 2 HOH 26 38 38 HOH HOH A . B 2 HOH 27 39 39 HOH HOH A . B 2 HOH 28 40 40 HOH HOH A . B 2 HOH 29 41 41 HOH HOH A . B 2 HOH 30 42 42 HOH HOH A . B 2 HOH 31 43 43 HOH HOH A . B 2 HOH 32 44 44 HOH HOH A . B 2 HOH 33 45 45 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 -23.1000000000 0.8660254038 -0.5000000000 0.0000000000 40.0103736548 0.0000000000 0.0000000000 -1.0000000000 11.9166666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-03-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' citation_author 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.name' 2 4 'Structure model' '_citation_author.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 _software.date ? _software.type ? _software.location ? _software.language ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O3'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DC _pdbx_validate_symm_contact.auth_seq_id_1 12 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 23 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_554 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.87 108.30 3.57 0.30 N 2 1 "C3'" A DG 1 ? ? "O3'" A DG 1 ? ? P A DC 2 ? ? 111.39 119.70 -8.31 1.20 Y 3 1 P A DC 2 ? ? "O5'" A DC 2 ? ? "C5'" A DC 2 ? ? 109.79 120.90 -11.11 1.60 N 4 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.30 108.30 3.00 0.30 N 5 1 "C3'" A DC 2 ? ? "O3'" A DC 2 ? ? P A DG 3 ? ? 107.60 119.70 -12.10 1.20 Y 6 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP1 A DG 3 ? ? 122.83 110.70 12.13 1.20 N 7 1 "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 103.72 109.40 -5.68 0.80 N 8 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 114.62 111.50 3.12 0.50 N 9 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 123.53 127.20 -3.67 0.60 N 10 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 112.56 108.30 4.26 0.30 N 11 1 "O5'" A DC 6 ? ? "C5'" A DC 6 ? ? "C4'" A DC 6 ? ? 101.66 109.40 -7.74 0.80 N 12 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 113.12 108.30 4.82 0.30 N 13 1 "O5'" A DT 8 ? ? P A DT 8 ? ? OP1 A DT 8 ? ? 118.77 110.70 8.07 1.20 N 14 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 121.73 127.20 -5.47 0.60 N 15 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 119.55 115.20 4.35 0.60 N 16 1 N3 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 115.42 119.90 -4.48 0.60 N 17 1 C6 A DA 9 ? ? N1 A DA 9 ? ? C2 A DA 9 ? ? 123.48 118.60 4.88 0.60 N 18 1 N1 A DA 9 ? ? C2 A DA 9 ? ? N3 A DA 9 ? ? 125.36 129.30 -3.94 0.50 N 19 1 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 114.28 117.70 -3.42 0.50 N 20 1 C5 A DG 11 ? ? C6 A DG 11 ? ? N1 A DG 11 ? ? 114.64 111.50 3.14 0.50 N 21 1 "O5'" A DC 12 ? ? "C5'" A DC 12 ? ? "C4'" A DC 12 ? ? 103.91 109.40 -5.49 0.80 N 22 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 113.03 108.30 4.73 0.30 N # _ndb_struct_conf_na.entry_id 117D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 12 12_565 -0.274 -0.085 -0.129 -12.290 -3.917 0.320 1 A_DG1:DC12_A A 1 ? A 12 ? 19 1 1 A DC 2 1_555 A DG 11 12_565 0.071 -0.164 0.373 -4.831 -7.088 -3.669 2 A_DC2:DG11_A A 2 ? A 11 ? 19 1 1 A DG 3 1_555 A DC 10 12_565 -0.040 -0.118 0.279 2.240 -9.199 -0.077 3 A_DG3:DC10_A A 3 ? A 10 ? 19 1 1 A DT 4 1_555 A DA 9 12_565 -0.042 -0.189 0.139 0.674 -9.323 2.734 4 A_DT4:DA9_A A 4 ? A 9 ? 20 1 1 A DA 5 1_555 A DT 8 12_565 -0.088 -0.077 0.249 6.923 -11.609 -1.724 5 A_DA5:DT8_A A 5 ? A 8 ? 20 1 1 A DC 6 1_555 A DG 7 12_565 0.355 -0.190 -0.204 7.301 -13.981 -0.579 6 A_DC6:DG7_A A 6 ? A 7 ? 19 1 1 A DG 7 1_555 A DC 6 12_565 -0.355 -0.190 -0.204 -7.301 -13.981 -0.579 7 A_DG7:DC6_A A 7 ? A 6 ? 19 1 1 A DT 8 1_555 A DA 5 12_565 0.088 -0.077 0.249 -6.923 -11.609 -1.724 8 A_DT8:DA5_A A 8 ? A 5 ? 20 1 1 A DA 9 1_555 A DT 4 12_565 0.042 -0.189 0.139 -0.674 -9.323 2.735 9 A_DA9:DT4_A A 9 ? A 4 ? 20 1 1 A DC 10 1_555 A DG 3 12_565 0.040 -0.118 0.279 -2.240 -9.199 -0.077 10 A_DC10:DG3_A A 10 ? A 3 ? 19 1 1 A DG 11 1_555 A DC 2 12_565 -0.071 -0.164 0.373 4.831 -7.088 -3.669 11 A_DG11:DC2_A A 11 ? A 2 ? 19 1 1 A DC 12 1_555 A DG 1 12_565 0.274 -0.085 -0.129 12.290 -3.917 0.320 12 A_DC12:DG1_A A 12 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 12 12_565 A DC 2 1_555 A DG 11 12_565 -0.216 -1.282 3.340 -3.342 5.223 28.654 -3.651 -0.287 3.068 10.399 6.654 29.304 1 AA_DG1DC2:DG11DC12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A DC 2 1_555 A DG 11 12_565 A DG 3 1_555 A DC 10 12_565 0.470 -1.746 2.940 -0.349 2.321 34.621 -3.241 -0.836 2.815 3.895 0.586 34.698 2 AA_DC2DG3:DC10DG11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A DG 3 1_555 A DC 10 12_565 A DT 4 1_555 A DA 9 12_565 -0.215 -1.595 3.424 2.732 1.327 29.820 -3.366 0.998 3.319 2.570 -5.292 29.971 3 AA_DG3DT4:DA9DC10_AA A 3 ? A 10 ? A 4 ? A 9 ? 1 A DT 4 1_555 A DA 9 12_565 A DA 5 1_555 A DT 8 12_565 -0.180 -1.167 3.083 0.802 7.653 31.066 -3.365 0.458 2.721 14.020 -1.469 31.982 4 AA_DT4DA5:DT8DA9_AA A 4 ? A 9 ? A 5 ? A 8 ? 1 A DA 5 1_555 A DT 8 12_565 A DC 6 1_555 A DG 7 12_565 0.262 -1.075 3.412 2.365 11.429 32.672 -3.554 -0.078 2.896 19.555 -4.046 34.641 5 AA_DA5DC6:DG7DT8_AA A 5 ? A 8 ? A 6 ? A 7 ? 1 A DC 6 1_555 A DG 7 12_565 A DG 7 1_555 A DC 6 12_565 0.000 -2.140 3.541 0.000 24.327 27.902 -6.204 0.000 1.316 41.797 0.000 36.858 6 AA_DC6DG7:DC6DG7_AA A 6 ? A 7 ? A 7 ? A 6 ? 1 A DG 7 1_555 A DC 6 12_565 A DT 8 1_555 A DA 5 12_565 -0.262 -1.075 3.412 -2.365 11.429 32.672 -3.554 0.078 2.896 19.555 4.046 34.641 7 AA_DG7DT8:DA5DC6_AA A 7 ? A 6 ? A 8 ? A 5 ? 1 A DT 8 1_555 A DA 5 12_565 A DA 9 1_555 A DT 4 12_565 0.180 -1.167 3.083 -0.802 7.653 31.066 -3.365 -0.458 2.721 14.020 1.469 31.982 8 AA_DT8DA9:DT4DA5_AA A 8 ? A 5 ? A 9 ? A 4 ? 1 A DA 9 1_555 A DT 4 12_565 A DC 10 1_555 A DG 3 12_565 0.215 -1.595 3.424 -2.732 1.327 29.820 -3.366 -0.998 3.319 2.570 5.292 29.971 9 AA_DA9DC10:DG3DT4_AA A 9 ? A 4 ? A 10 ? A 3 ? 1 A DC 10 1_555 A DG 3 12_565 A DG 11 1_555 A DC 2 12_565 -0.470 -1.746 2.940 0.349 2.321 34.621 -3.241 0.836 2.815 3.895 -0.586 34.698 10 AA_DC10DG11:DC2DG3_AA A 10 ? A 3 ? A 11 ? A 2 ? 1 A DG 11 1_555 A DC 2 12_565 A DC 12 1_555 A DG 1 12_565 0.216 -1.282 3.340 3.342 5.223 28.654 -3.651 0.287 3.068 10.399 -6.654 29.304 11 AA_DG11DC12:DG1DC2_AA A 11 ? A 2 ? A 12 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #