0.023685 0.000000 0.000000 0.000000 0.023685 0.000000 0.000000 0.000000 0.039888 0.00000 0.00000 0.00000 Bingman, C.A. Li, X. Zon, G. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.220 42.220 25.070 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer US Biochemistry BICHAW 0033 0006-2960 31 12803 12812 10.1021/bi00166a014 1463751 Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes. 1992 10.2210/pdb118d/pdb pdb_0000118d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 263.00 1 AREA DETECTOR SIEMENS-NICOLET x-ray 1 1.0 ROTATING ANODE ELLIOTT GX-20 2427.605 DNA (5'-D(*GP*TP*GP*CP*GP*CP*AP*C)-3') 1 syn polymer 18.015 water 42 nat water no no (DG)(DT)(DG)(DC)(DG)(DC)(DA)(DC) GTGCGCAC A polydeoxyribonucleotide n n n n n n n n 2.30 46.55 VAPOR DIFFUSION 6.50 pH 6.50, VAPOR DIFFUSION WATER 1 MGCL2 1 SPERMINE 1 NA CACODYLATE 1 WATER 2 MPD 2 -13.287 1 19 A 1 A 8 -0.889 A_DG1:DC8_A 1 -9.312 -0.270 -0.182 -0.091 1.737 1 20 A 2 A 7 4.056 A_DT2:DA7_A 2 -9.457 0.117 0.062 -0.172 -1.689 1 19 A 3 A 6 -0.709 A_DG3:DC6_A 3 -9.720 -0.155 0.103 -0.139 -2.305 1 19 A 4 A 5 -1.880 A_DC4:DG5_A 4 -7.996 0.148 0.263 -0.150 2.305 1 19 A 5 A 4 -1.880 A_DG5:DC4_A 5 -7.996 -0.148 0.263 -0.150 1.689 1 19 A 6 A 3 -0.709 A_DC6:DG3_A 6 -9.720 0.155 0.103 -0.139 -1.737 1 20 A 7 A 2 4.056 A_DA7:DT2_A 7 -9.457 -0.117 0.062 -0.172 13.287 1 19 A 8 A 1 -0.889 A_DC8:DG1_A 8 -9.312 0.270 -0.182 -0.091 2.682 32.457 A A 1 2 14.070 A A 8 7 3.057 7.788 0.319 -1.157 AA_DG1DT2:DA7DC8_AA 1 -1.647 2.976 31.491 -3.288 -0.829 2.746 32.442 A A 2 3 17.931 A A 7 6 3.310 9.867 -0.013 -1.396 AA_DT2DG3:DC6DA7_AA 2 0.508 -0.923 30.939 -4.144 0.107 3.220 37.245 A A 3 4 3.595 A A 6 5 3.308 2.295 0.167 -1.387 AA_DG3DC4:DG5DC6_AA 3 0.015 -0.024 37.177 -2.476 -0.259 2.385 25.014 A A 4 5 17.467 A A 5 4 3.078 7.454 0.000 -1.896 AA_DC4DG5:DC4DG5_AA 4 0.000 0.000 23.894 -6.272 0.000 3.220 37.245 A A 5 6 3.595 A A 4 3 3.308 2.295 -0.167 -1.387 AA_DG5DC6:DG3DC4_AA 5 -0.015 0.024 37.177 -2.476 0.259 2.746 32.442 A A 6 7 17.931 A A 3 2 3.310 9.867 0.013 -1.396 AA_DC6DA7:DT2DG3_AA 6 -0.508 0.923 30.939 -4.144 -0.107 2.682 32.457 A A 7 8 14.070 A A 2 1 3.057 7.788 -0.319 -1.157 AA_DA7DC8:DG1DT2_AA 7 1.647 -2.976 31.491 -3.288 0.829 audit_author citation_author database_2 repository Initial release Version format compliance Version format compliance Database references Structure summary 1 0 1993-02-11 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-03-22 _audit_author.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1993-02-11 REL REL HOH water HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 50 2 HOH HOH 50 A G 1 n 1 DG 1 A T 2 n 2 DT 2 A G 3 n 3 DG 3 A C 4 n 4 DC 4 A G 5 n 5 DG 5 A C 6 n 6 DC 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 50 B HOH 1 3.46 0.50 111.50 114.96 A A A C5 C6 N1 DG DG DG 1 1 1 N 1 4.53 0.30 108.30 112.83 A A A O4' C1' N1 DT DT DT 2 2 2 N 1 -3.87 0.60 127.20 123.33 A A A C2 N3 C4 DT DT DT 2 2 2 N 1 4.15 0.30 108.30 112.45 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 11.61 1.90 104.00 115.61 A A A O3' P O5' DG DC DC 3 4 4 Y 1 7.89 1.10 110.50 118.39 A A A O3' P OP2 DC DG DG 4 5 5 Y 1 4.92 0.60 118.60 123.52 A A A C6 N1 C2 DA DA DA 7 7 7 N 1 -4.73 0.50 129.30 124.57 A A A N1 C2 N3 DA DA DA 7 7 7 N 1 -3.32 0.50 117.70 114.38 A A A C5 C6 N1 DA DA DA 7 7 7 N 1 4.85 0.30 108.30 113.15 A A A O4' C1' N1 DC DC DC 8 8 8 N 0.1540000 1.640 8.000 4483 1 2.000 TR isotropic TR isotropic 1.640 8.000 42 203 0 161 0 0.005 0.025 0.017 0.050 0.015 0.040 0.053 0.100 0.142 0.090 fix fix 1.640 118D 11665 2767 4.000 1 refinement NUCLSQ CRYSTAL AND MOLECULAR STRUCTURE OF D(GTGCGCAC): INVESTIGATION OF THE EFFECTS OF BASE SEQUENCE ON THE CONFORMATION OF OCTAMER DUPLEXES 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 8 A N3 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 8 A O2 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 8 A N4 DC 8 7_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 A DA 7 A N1 DA 7 7_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 A DA 7 A N6 DA 7 7_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 A DC 6 A N3 DC 6 7_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 A DC 6 A O2 DC 6 7_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 A DC 6 A N4 DC 6 7_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 A DG 5 A N1 DG 5 7_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 A DG 5 A O6 DG 5 7_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 A DG 5 A N2 DG 5 7_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 A DC 4 A N3 DC 4 7_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 A DC 4 A O2 DC 4 7_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 A DC 4 A N4 DC 4 7_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 3 A N1 DG 3 7_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 3 A O6 DG 3 7_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 3 A N2 DG 3 7_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 A DT 2 A N3 DT 2 7_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 A DT 2 A O4 DT 2 7_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 1 A N1 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 1 A O6 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 1 A N2 DG 1 7_555 DNA A-DNA, DOUBLE HELIX, DNA 118D PDB 1 118D 1 8 118D 1 8 118D A 1 1 8 96 P 43 21 2