0.023685
0.000000
0.000000
0.000000
0.023685
0.000000
0.000000
0.000000
0.039888
0.00000
0.00000
0.00000
Bingman, C.A.
Li, X.
Zon, G.
Sundaralingam, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
42.220
42.220
25.070
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
31
12803
12812
10.1021/bi00166a014
1463751
Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes.
1992
10.2210/pdb118d/pdb
pdb_0000118d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
263.00
1
AREA DETECTOR
SIEMENS-NICOLET
x-ray
1
1.0
ROTATING ANODE
ELLIOTT GX-20
2427.605
DNA (5'-D(*GP*TP*GP*CP*GP*CP*AP*C)-3')
1
syn
polymer
18.015
water
42
nat
water
no
no
(DG)(DT)(DG)(DC)(DG)(DC)(DA)(DC)
GTGCGCAC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
2.30
46.55
VAPOR DIFFUSION
6.50
pH 6.50, VAPOR DIFFUSION
WATER
1
MGCL2
1
SPERMINE
1
NA CACODYLATE
1
WATER
2
MPD
2
-13.287
1
19
A
1
A
8
-0.889
A_DG1:DC8_A
1
-9.312
-0.270
-0.182
-0.091
1.737
1
20
A
2
A
7
4.056
A_DT2:DA7_A
2
-9.457
0.117
0.062
-0.172
-1.689
1
19
A
3
A
6
-0.709
A_DG3:DC6_A
3
-9.720
-0.155
0.103
-0.139
-2.305
1
19
A
4
A
5
-1.880
A_DC4:DG5_A
4
-7.996
0.148
0.263
-0.150
2.305
1
19
A
5
A
4
-1.880
A_DG5:DC4_A
5
-7.996
-0.148
0.263
-0.150
1.689
1
19
A
6
A
3
-0.709
A_DC6:DG3_A
6
-9.720
0.155
0.103
-0.139
-1.737
1
20
A
7
A
2
4.056
A_DA7:DT2_A
7
-9.457
-0.117
0.062
-0.172
13.287
1
19
A
8
A
1
-0.889
A_DC8:DG1_A
8
-9.312
0.270
-0.182
-0.091
2.682
32.457
A
A
1
2
14.070
A
A
8
7
3.057
7.788
0.319
-1.157
AA_DG1DT2:DA7DC8_AA
1
-1.647
2.976
31.491
-3.288
-0.829
2.746
32.442
A
A
2
3
17.931
A
A
7
6
3.310
9.867
-0.013
-1.396
AA_DT2DG3:DC6DA7_AA
2
0.508
-0.923
30.939
-4.144
0.107
3.220
37.245
A
A
3
4
3.595
A
A
6
5
3.308
2.295
0.167
-1.387
AA_DG3DC4:DG5DC6_AA
3
0.015
-0.024
37.177
-2.476
-0.259
2.385
25.014
A
A
4
5
17.467
A
A
5
4
3.078
7.454
0.000
-1.896
AA_DC4DG5:DC4DG5_AA
4
0.000
0.000
23.894
-6.272
0.000
3.220
37.245
A
A
5
6
3.595
A
A
4
3
3.308
2.295
-0.167
-1.387
AA_DG5DC6:DG3DC4_AA
5
-0.015
0.024
37.177
-2.476
0.259
2.746
32.442
A
A
6
7
17.931
A
A
3
2
3.310
9.867
0.013
-1.396
AA_DC6DA7:DT2DG3_AA
6
-0.508
0.923
30.939
-4.144
-0.107
2.682
32.457
A
A
7
8
14.070
A
A
2
1
3.057
7.788
-0.319
-1.157
AA_DA7DC8:DG1DT2_AA
7
1.647
-2.976
31.491
-3.288
0.829
audit_author
citation_author
database_2
repository
Initial release
Version format compliance
Version format compliance
Database references
Structure summary
1
0
1993-02-11
1
1
2008-05-22
1
2
2011-07-13
1
3
2023-03-22
_audit_author.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1993-02-11
REL
REL
HOH
water
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
HOH
46
2
HOH
HOH
46
A
HOH
47
2
HOH
HOH
47
A
HOH
48
2
HOH
HOH
48
A
HOH
49
2
HOH
HOH
49
A
HOH
50
2
HOH
HOH
50
A
G
1
n
1
DG
1
A
T
2
n
2
DT
2
A
G
3
n
3
DG
3
A
C
4
n
4
DC
4
A
G
5
n
5
DG
5
A
C
6
n
6
DC
6
A
A
7
n
7
DA
7
A
C
8
n
8
DC
8
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
50
B
HOH
1
3.46
0.50
111.50
114.96
A
A
A
C5
C6
N1
DG
DG
DG
1
1
1
N
1
4.53
0.30
108.30
112.83
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
1
-3.87
0.60
127.20
123.33
A
A
A
C2
N3
C4
DT
DT
DT
2
2
2
N
1
4.15
0.30
108.30
112.45
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
11.61
1.90
104.00
115.61
A
A
A
O3'
P
O5'
DG
DC
DC
3
4
4
Y
1
7.89
1.10
110.50
118.39
A
A
A
O3'
P
OP2
DC
DG
DG
4
5
5
Y
1
4.92
0.60
118.60
123.52
A
A
A
C6
N1
C2
DA
DA
DA
7
7
7
N
1
-4.73
0.50
129.30
124.57
A
A
A
N1
C2
N3
DA
DA
DA
7
7
7
N
1
-3.32
0.50
117.70
114.38
A
A
A
C5
C6
N1
DA
DA
DA
7
7
7
N
1
4.85
0.30
108.30
113.15
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
0.1540000
1.640
8.000
4483
1
2.000
TR
isotropic
TR
isotropic
1.640
8.000
42
203
0
161
0
0.005
0.025
0.017
0.050
0.015
0.040
0.053
0.100
0.142
0.090
fix
fix
1.640
118D
11665
2767
4.000
1
refinement
NUCLSQ
CRYSTAL AND MOLECULAR STRUCTURE OF D(GTGCGCAC): INVESTIGATION OF THE EFFECTS OF BASE SEQUENCE ON THE CONFORMATION OF OCTAMER DUPLEXES
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
8
A
N3
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
8
A
O2
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
8
A
N4
DC
8
7_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
A
DA
7
A
N1
DA
7
7_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
A
DA
7
A
N6
DA
7
7_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
A
DC
6
A
N3
DC
6
7_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
A
DC
6
A
O2
DC
6
7_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
A
DC
6
A
N4
DC
6
7_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
A
DG
5
A
N1
DG
5
7_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
A
DG
5
A
O6
DG
5
7_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
A
DG
5
A
N2
DG
5
7_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
A
DC
4
A
N3
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
A
DC
4
A
O2
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
A
DC
4
A
N4
DC
4
7_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
A
DG
3
A
N1
DG
3
7_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
A
DG
3
A
O6
DG
3
7_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
A
DG
3
A
N2
DG
3
7_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
A
DT
2
A
N3
DT
2
7_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
A
DT
2
A
O4
DT
2
7_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
A
DG
1
A
N1
DG
1
7_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
A
DG
1
A
O6
DG
1
7_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
A
DG
1
A
N2
DG
1
7_555
DNA
A-DNA, DOUBLE HELIX, DNA
118D
PDB
1
118D
1
8
118D
1
8
118D
A
1
1
8
96
P 43 21 2