1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Fedoroff, O.Y.
Salazar, M.
Reid, B.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
233
509
523
10.1006/jmbi.1993.1528
8411159
Structure of a DNA:RNA Hybrid Duplex. Why Rnase H Does not Cleave Pure RNA
1993
US
Biochemistry
BICHAW
0033
0006-2960
32
4207
The DNA Strand in DNA-RNA Hybrid Duplexes is Neither B-Form Nor A-Form in Solution
1993
10.2210/pdb124d/pdb
pdb_0000124d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2426.617
DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*G)-3')
1
syn
polymer
2526.561
RNA (5'-R(*CP*AP*UP*GP*UP*GP*AP*C)-3')
1
syn
polymer
no
no
(DG)(DT)(DC)(DA)(DC)(DA)(DT)(DG)
GTCACATG
A
polydeoxyribonucleotide
no
no
CAUGUGAC
CAUGUGAC
B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
5.896
1
19
A
1
B
16
-1.884
A_DG1:C16_B
1
2.841
-0.763
0.118
-0.228
6.312
1
20
A
2
B
15
2.392
A_DT2:A15_B
2
-8.561
0.590
-0.265
-0.140
1.163
1
19
A
3
B
14
-0.643
A_DC3:G14_B
3
-7.532
0.903
0.162
-0.275
8.834
1
20
A
4
B
13
-2.496
A_DA4:U13_B
4
-11.809
-0.376
0.646
-0.169
6.507
1
19
A
5
B
12
-2.157
A_DC5:G12_B
5
-15.514
0.706
0.316
-0.237
15.289
1
20
A
6
B
11
-0.631
A_DA6:U11_B
6
-10.815
-0.504
0.785
-0.188
8.385
1
20
A
7
B
10
-2.267
A_DT7:A10_B
7
-20.339
0.136
-0.034
-0.056
-4.832
1
19
A
8
B
9
-3.514
A_DG8:C9_B
8
-23.905
-0.535
0.241
-0.220
3.125
34.108
A
A
1
2
2.304
B
B
16
15
3.234
1.350
-0.277
-2.127
AA_DG1DT2:A15C16_BB
1
2.337
-3.989
34.004
-3.835
0.834
2.831
32.428
A
A
2
3
11.076
B
B
15
14
3.177
6.148
0.014
-1.556
AA_DT2DC3:G14A15_BB
2
-1.496
2.695
31.821
-3.790
-0.269
1.803
28.198
A
A
3
4
19.498
B
B
14
13
2.549
9.312
-0.137
-1.878
AA_DC3DA4:U13G14_BB
3
-2.807
5.879
26.499
-5.347
-0.168
3.049
34.549
A
A
4
5
3.431
B
B
13
12
3.144
2.034
0.100
-1.542
AA_DA4DC5:G12U13_BB
4
2.724
-4.594
34.386
-2.895
0.231
1.751
31.032
A
A
5
6
19.758
B
B
12
11
2.464
10.333
-0.034
-1.694
AA_DC5DA6:U11G12_BB
5
-4.918
9.404
28.894
-4.495
-0.569
3.110
36.139
A
A
6
7
3.938
B
B
11
10
3.270
2.431
-0.262
-1.050
AA_DA6DT7:A10U11_BB
6
6.016
-9.748
35.571
-2.031
1.257
2.266
38.082
A
A
7
8
28.600
B
B
10
9
3.179
17.955
0.331
-1.158
AA_DT7DG8:C9A10_BB
7
-2.571
4.096
33.627
-3.800
-0.798
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1993-10-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1993-05-07
REL
CHEMICALLY SYNTHESIZED
sample
CHEMICALLY SYHTHESIZED
sample
1
1
132 NOE RESTRAINTS AND 20 HYDROGEN BONDS WERE USED.
RESTRAINED MOLECULAR DYNAMICS/NOESY SIMULATION REFINEMENT
G
1
n
1
DG
1
A
T
2
n
2
DT
2
A
C
3
n
3
DC
3
A
A
4
n
4
DA
4
A
C
5
n
5
DC
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
G
8
n
8
DG
8
A
C
9
n
1
C
9
B
A
10
n
2
A
10
B
U
11
n
3
U
11
B
G
12
n
4
G
12
B
U
13
n
5
U
13
B
G
14
n
6
G
14
B
A
15
n
7
A
15
B
C
16
n
8
C
16
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
C
9
0.071
SIDE CHAIN
1
B
A
10
0.082
SIDE CHAIN
1
B
C
16
0.079
SIDE CHAIN
1
3.30
0.30
108.30
111.60
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
1
5.07
0.30
108.30
113.37
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
4.52
0.30
108.30
112.82
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
5.61
0.30
108.30
113.91
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
3.53
0.30
108.30
111.83
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
2.72
0.30
108.30
111.02
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
2.30
0.30
108.30
110.60
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
5.56
0.90
109.80
115.36
B
B
B
C5'
C4'
O4'
U
U
U
11
11
11
N
1
5.37
0.70
108.50
113.87
B
B
B
O4'
C1'
N1
U
U
U
11
11
11
N
1
7.25
0.90
109.80
117.05
B
B
B
C5'
C4'
O4'
G
G
G
12
12
12
N
1
7.15
0.90
109.80
116.95
B
B
B
C5'
C4'
O4'
U
U
U
13
13
13
N
1
4.94
0.70
108.50
113.44
B
B
B
O4'
C1'
N1
U
U
U
13
13
13
N
1
6.16
0.90
109.80
115.96
B
B
B
C5'
C4'
O4'
G
G
G
14
14
14
N
STRUCTURE OF A DNA:RNA HYBRID DUPLEX: WHY RNASE H DOES NOT CLEAVE PURE RNA
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
C
16
B
N3
C
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
C
16
B
O2
C
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
C
16
B
N4
C
8
1_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
B
A
15
B
N1
A
7
1_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
B
A
15
B
N6
A
7
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
G
14
B
N1
G
6
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
G
14
B
O6
G
6
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
G
14
B
N2
G
6
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
U
13
B
N3
U
5
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
U
13
B
O4
U
5
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
G
12
B
N1
G
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
G
12
B
O6
G
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
G
12
B
N2
G
4
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
U
11
B
N3
U
3
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
U
11
B
O4
U
3
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
A
10
B
N1
A
2
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
A
10
B
N6
A
2
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
B
C
9
B
N3
C
1
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
B
C
9
B
O2
C
1
1_555
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
B
C
9
B
N4
C
1
1_555
DNA-RNA HYBRID
DNA-RNA COMPLEX, DOUBLE HELIX, DNA-RNA HYBRID
124D
PDB
1
124D
124D
PDB
2
124D
1
8
124D
1
8
124D
A
1
1
8
9
16
124D
9
16
124D
B
2
1
8
1
P 1