0.039635 0.000000 0.000000 0.000000 0.024643 0.000000 0.000000 0.000000 0.015133 0.00000 0.00000 0.00000 Sriram, M. Van Der Marel, G.A. Roelen, H.L.P.F. Van Boom, J.H. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 25.230 40.580 66.080 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C25 H24 N6 O 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE HOECHST 33258 non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N O Y 148 N C Y 149 N C Y 150 N C Y 151 N C Y 152 N C Y 153 N C Y 154 N C Y 155 N N Y 156 N C Y 157 N C Y 158 N N Y 159 N C Y 160 N C Y 161 N C Y 162 N C Y 163 N C Y 164 N N Y 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N C Y 171 N C N 172 N N N 173 N C N 174 N C N 175 N N N 176 N C N 177 N C N 178 N C N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing Y 154 N doub Y 155 N sing Y 156 N sing N 157 N sing Y 158 N doub N 159 N sing Y 160 N sing Y 161 N sing Y 162 N doub N 163 N sing N 164 N sing Y 165 N sing Y 166 N doub Y 167 N sing N 168 N sing Y 169 N doub Y 170 N sing Y 171 N sing Y 172 N sing Y 173 N doub N 174 N sing Y 175 N sing N 176 N sing Y 177 N doub Y 178 N sing N 179 N sing Y 180 N sing Y 181 N doub Y 182 N sing N 183 N sing Y 184 N doub Y 185 N sing Y 186 N sing Y 187 N sing Y 188 N doub N 189 N sing Y 190 N sing N 191 N sing Y 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing UK EMBO J. EMJODG 0897 0261-4189 11 225 232 1371249 Conformation of B-DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. 1992 10.2210/pdb127d/pdb pdb_0000127d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ROOM TEMPERATURE 1 DIFFRACTOMETER RIGAKU AFC-5R x-ray 1 1.0 ROTATING ANODE 3663.392 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 424.498 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE 1 syn non-polymer 18.015 water 121 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.31 46.72 VAPOR DIFFUSION 6.00 pH 6.00, VAPOR DIFFUSION ROOM TEMPERATURE WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 SPERMINE 1 WATER 2 MPD 2 15.599 1 19 A 1 B 24 0.356 A_DC1:DG24_B 1 -3.861 -0.194 -0.156 -0.058 0.037 1 19 A 2 B 23 -3.280 A_DG2:DC23_B 2 -8.341 -0.182 0.308 -0.154 -1.876 1 19 A 3 B 22 -6.024 A_DC3:DG22_B 3 -7.725 -0.133 0.191 -0.283 7.981 1 19 A 4 B 21 -2.684 A_DG4:DC21_B 4 -2.326 -0.171 -0.169 -0.252 4.440 1 20 A 5 B 20 0.815 A_DA5:DT20_B 5 -8.944 -0.086 0.024 -0.193 -1.852 1 20 A 6 B 19 -1.859 A_DA6:DT19_B 6 -27.422 0.880 -0.285 -0.316 9.786 1 20 A 7 B 18 -3.118 A_DT7:DA18_B 7 -17.018 -0.166 -0.917 -0.258 -11.285 1 20 A 8 B 17 6.516 A_DT8:DA17_B 8 -6.262 0.654 -0.427 -0.267 -10.647 1 19 A 9 B 16 -1.808 A_DC9:DG16_B 9 -9.959 -0.082 -0.190 -0.228 6.843 1 19 A 10 B 15 3.091 A_DG10:DC15_B 10 -7.668 0.048 -0.006 -0.192 -0.504 1 19 A 11 B 14 -5.020 A_DC11:DG14_B 11 -18.912 0.211 0.718 -0.339 -8.069 1 19 A 12 B 13 -4.814 A_DG12:DC13_B 12 -5.846 -0.471 -0.448 -0.410 3.706 41.373 A A 1 2 2.363 B B 24 23 3.688 1.667 -0.229 0.403 AA_DC1DG2:DC23DG24_BB 1 -4.075 5.777 41.148 0.368 -0.170 3.611 36.509 A A 2 3 -4.855 B B 23 22 3.619 -3.029 0.503 0.384 AA_DG2DC3:DG22DC23_BB 2 5.076 -8.136 36.044 1.078 -0.022 3.319 33.828 A A 3 4 7.701 B B 22 21 3.244 4.467 -0.183 0.885 AA_DC3DG4:DC21DG22_BB 3 1.634 -2.817 33.502 0.794 0.581 3.343 30.908 A A 4 5 8.324 B B 21 20 3.412 4.421 -0.143 -0.279 AA_DG4DA5:DT20DC21_BB 4 -0.830 1.563 30.587 -1.413 0.101 3.411 46.663 A A 5 6 3.040 B B 20 19 3.428 2.407 -0.451 -0.050 AA_DA5DA6:DT19DT20_BB 5 1.096 -1.384 46.593 -0.273 0.666 2.922 26.982 A A 6 7 -1.779 B B 19 18 2.843 -0.824 0.572 -0.779 AA_DA6DT7:DA18DT19_BB 6 5.578 -12.040 26.397 -1.482 0.041 3.955 39.909 A A 7 8 8.480 B B 18 17 3.999 5.769 0.136 -0.021 AA_DT7DT8:DA17DA18_BB 7 -0.580 0.852 39.503 -0.843 -0.282 3.029 35.417 A A 8 9 9.599 B B 17 16 3.066 5.814 0.000 0.016 AA_DT8DC9:DG16DA17_BB 8 -0.314 0.518 34.950 -0.775 -0.044 3.008 33.858 A A 9 10 -2.027 B B 16 15 3.138 -1.178 0.459 1.968 AA_DC9DG10:DC15DG16_BB 9 -3.499 6.019 33.662 3.559 -1.318 3.764 39.609 A A 10 11 -15.785 B B 15 14 3.819 -10.495 -1.177 0.340 AA_DG10DC11:DG14DC15_BB 10 -8.668 13.038 37.286 1.973 0.522 3.512 37.269 A A 11 12 8.120 B B 14 13 3.600 5.061 0.310 0.516 AA_DC11DG12:DC13DG14_BB 11 13.584 -21.793 34.427 0.046 1.557 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1994-01-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1993-06-30 REL HT 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE HOH water HT 25 2 HT HT 25 B HOH 28 3 HOH HOH 28 A HOH 33 3 HOH HOH 33 A HOH 35 3 HOH HOH 35 A HOH 37 3 HOH HOH 37 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 45 3 HOH HOH 45 A HOH 52 3 HOH HOH 52 A HOH 57 3 HOH HOH 57 A HOH 60 3 HOH HOH 60 A HOH 61 3 HOH HOH 61 A HOH 66 3 HOH HOH 66 A HOH 68 3 HOH HOH 68 A HOH 75 3 HOH HOH 75 A HOH 77 3 HOH HOH 77 A HOH 78 3 HOH HOH 78 A HOH 79 3 HOH HOH 79 A HOH 82 3 HOH HOH 82 A HOH 83 3 HOH HOH 83 A HOH 89 3 HOH HOH 89 A HOH 90 3 HOH HOH 90 A HOH 91 3 HOH HOH 91 A HOH 93 3 HOH HOH 93 A HOH 94 3 HOH HOH 94 A HOH 95 3 HOH HOH 95 A HOH 96 3 HOH HOH 96 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 107 3 HOH HOH 107 A HOH 110 3 HOH HOH 110 A HOH 111 3 HOH HOH 111 A HOH 112 3 HOH HOH 112 A HOH 114 3 HOH HOH 114 A HOH 115 3 HOH HOH 115 A HOH 118 3 HOH HOH 118 A HOH 120 3 HOH HOH 120 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 125 3 HOH HOH 125 A HOH 126 3 HOH HOH 126 A HOH 127 3 HOH HOH 127 A HOH 129 3 HOH HOH 129 A HOH 130 3 HOH HOH 130 A HOH 131 3 HOH HOH 131 A HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 137 3 HOH HOH 137 A HOH 138 3 HOH HOH 138 A HOH 139 3 HOH HOH 139 A HOH 140 3 HOH HOH 140 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 26 3 HOH HOH 26 B HOH 27 3 HOH HOH 27 B HOH 29 3 HOH HOH 29 B HOH 30 3 HOH HOH 30 B HOH 31 3 HOH HOH 31 B HOH 32 3 HOH HOH 32 B HOH 34 3 HOH HOH 34 B HOH 36 3 HOH HOH 36 B HOH 38 3 HOH HOH 38 B HOH 39 3 HOH HOH 39 B HOH 40 3 HOH HOH 40 B HOH 43 3 HOH HOH 43 B HOH 44 3 HOH HOH 44 B HOH 46 3 HOH HOH 46 B HOH 47 3 HOH HOH 47 B HOH 48 3 HOH HOH 48 B HOH 49 3 HOH HOH 49 B HOH 50 3 HOH HOH 50 B HOH 51 3 HOH HOH 51 B HOH 53 3 HOH HOH 53 B HOH 54 3 HOH HOH 54 B HOH 55 3 HOH HOH 55 B HOH 56 3 HOH HOH 56 B HOH 58 3 HOH HOH 58 B HOH 59 3 HOH HOH 59 B HOH 62 3 HOH HOH 62 B HOH 63 3 HOH HOH 63 B HOH 64 3 HOH HOH 64 B HOH 65 3 HOH HOH 65 B HOH 67 3 HOH HOH 67 B HOH 69 3 HOH HOH 69 B HOH 70 3 HOH HOH 70 B HOH 71 3 HOH HOH 71 B HOH 72 3 HOH HOH 72 B HOH 73 3 HOH HOH 73 B HOH 74 3 HOH HOH 74 B HOH 76 3 HOH HOH 76 B HOH 80 3 HOH HOH 80 B HOH 81 3 HOH HOH 81 B HOH 84 3 HOH HOH 84 B HOH 85 3 HOH HOH 85 B HOH 86 3 HOH HOH 86 B HOH 87 3 HOH HOH 87 B HOH 88 3 HOH HOH 88 B HOH 92 3 HOH HOH 92 B HOH 97 3 HOH HOH 97 B HOH 98 3 HOH HOH 98 B HOH 99 3 HOH HOH 99 B HOH 100 3 HOH HOH 100 B HOH 101 3 HOH HOH 101 B HOH 102 3 HOH HOH 102 B HOH 106 3 HOH HOH 106 B HOH 108 3 HOH HOH 108 B HOH 109 3 HOH HOH 109 B HOH 113 3 HOH HOH 113 B HOH 116 3 HOH HOH 116 B HOH 117 3 HOH HOH 117 B HOH 119 3 HOH HOH 119 B HOH 121 3 HOH HOH 121 B HOH 128 3 HOH HOH 128 B HOH 132 3 HOH HOH 132 B HOH 133 3 HOH HOH 133 B HOH 136 3 HOH HOH 136 B HOH 143 3 HOH HOH 143 B HOH 144 3 HOH HOH 144 B HOH 145 3 HOH HOH 145 B HOH 146 3 HOH HOH 146 B DC 1 n 1 DC 1 A DG 2 n 2 DG 2 A DC 3 n 3 DC 3 A DG 4 n 4 DG 4 A DA 5 n 5 DA 5 A DA 6 n 6 DA 6 A DT 7 n 7 DT 7 A DT 8 n 8 DT 8 A DC 9 n 9 DC 9 A DG 10 n 10 DG 10 A DC 11 n 11 DC 11 A DG 12 n 12 DG 12 A DC 13 n 1 DC 13 B DG 14 n 2 DG 14 B DC 15 n 3 DC 15 B DG 16 n 4 DG 16 B DA 17 n 5 DA 17 B DA 18 n 6 DA 18 B DT 19 n 7 DT 19 B DT 20 n 8 DT 20 B DC 21 n 9 DC 21 B DG 22 n 10 DG 22 B DC 23 n 11 DC 23 B DG 24 n 12 DG 24 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B OP1 O DC HOH 23 62 1.68 1 B B OP2 O DC HOH 15 98 1.95 1 B B O O HOH HOH 27 71 2.06 1 B B O3' O DG HOH 14 98 2.12 1 -4.36 0.40 104.50 100.14 A A A O4' C4' C3' DC DC DC 1 1 1 N 1 7.76 1.20 119.70 127.46 A A A C3' O3' P DC DC DG 1 1 2 Y 1 4.14 0.30 108.30 112.44 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -2.69 0.40 104.50 101.81 A A A O4' C4' C3' DC DC DC 3 3 3 N 1 9.11 0.30 108.30 117.41 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 -2.43 0.40 121.90 119.47 A A A N3 C4 C5 DC DC DC 3 3 3 N 1 -7.73 0.80 109.40 101.67 A A A O5' C5' C4' DG DG DG 4 4 4 N 1 7.86 0.30 108.30 116.16 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -6.06 0.80 109.40 103.34 A A A O5' C5' C4' DA DA DA 5 5 5 N 1 3.75 0.60 118.60 122.35 A A A C6 N1 C2 DA DA DA 5 5 5 N 1 -3.87 0.50 129.30 125.43 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 -5.12 0.40 104.50 99.38 A A A O4' C4' C3' DA DA DA 6 6 6 N 1 7.83 0.30 108.30 116.13 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 4.47 0.60 118.60 123.07 A A A C6 N1 C2 DA DA DA 6 6 6 N 1 -4.33 0.50 129.30 124.97 A A A N1 C2 N3 DA DA DA 6 6 6 N 1 3.71 0.60 114.60 118.31 A A A N1 C2 N3 DT DT DT 7 7 7 N 1 -5.88 0.60 127.20 121.32 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 4.64 0.60 115.20 119.84 A A A N3 C4 C5 DT DT DT 7 7 7 N 1 9.44 1.20 119.70 129.14 A A A C3' O3' P DT DT DT 7 7 8 Y 1 -6.10 0.80 109.40 103.30 A A A O5' C5' C4' DT DT DT 8 8 8 N 1 7.42 1.20 110.70 118.12 A A A O5' P OP2 DC DC DC 9 9 9 N 1 -5.72 0.80 109.40 103.68 A A A O5' C5' C4' DC DC DC 9 9 9 N 1 -9.78 1.60 120.90 111.12 A A A P O5' C5' DC DC DC 9 9 9 N 1 -4.51 0.70 108.00 103.49 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 16.43 1.20 119.70 136.13 A A A C3' O3' P DG DG DC 10 10 11 Y 1 -4.86 0.80 109.40 104.54 A A A O5' C5' C4' DC DC DC 11 11 11 N 1 6.06 0.30 108.30 114.36 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 -5.27 0.80 109.40 104.13 A A A O5' C5' C4' DG DG DG 12 12 12 N 1 8.35 0.30 108.30 116.65 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 3.63 0.60 119.90 123.53 A A A N1 C6 O6 DG DG DG 12 12 12 N 1 -6.16 0.60 128.60 122.44 A A A C5 C6 O6 DG DG DG 12 12 12 N 1 -4.19 0.40 104.50 100.31 B B B O4' C4' C3' DC DC DC 13 13 13 N 1 4.76 0.70 118.00 122.76 B B B N3 C4 N4 DC DC DC 13 13 13 N 1 7.35 1.20 119.70 127.05 B B B C3' O3' P DC DC DG 13 13 14 Y 1 3.42 0.30 108.30 111.72 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 3.14 0.50 111.50 114.64 B B B C5 C6 N1 DG DG DG 16 16 16 N 1 19.45 1.20 119.70 139.15 B B B C3' O3' P DG DG DA 16 16 17 Y 1 -11.86 1.60 120.90 109.04 B B B P O5' C5' DA DA DA 17 17 17 N 1 -3.74 0.40 104.50 100.76 B B B O4' C4' C3' DA DA DA 17 17 17 N 1 4.15 0.60 118.60 122.75 B B B C6 N1 C2 DA DA DA 17 17 17 N 1 -3.44 0.50 117.70 114.26 B B B C5 C6 N1 DA DA DA 17 17 17 N 1 13.65 1.20 119.70 133.35 B B B C3' O3' P DA DA DA 17 17 18 Y 1 -6.67 0.80 102.40 95.73 B B B C3' C2' C1' DA DA DA 18 18 18 N 1 3.17 0.30 108.30 111.47 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 3.78 0.60 118.60 122.38 B B B C6 N1 C2 DA DA DA 18 18 18 N 1 -4.35 0.50 129.30 124.95 B B B N1 C2 N3 DA DA DA 18 18 18 N 1 3.61 0.60 118.60 122.21 B B B N1 C6 N6 DA DA DA 18 18 18 N 1 7.67 0.30 108.30 115.97 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 -4.57 0.60 127.20 122.63 B B B C2 N3 C4 DT DT DT 19 19 19 N 1 4.55 0.60 115.20 119.75 B B B N3 C4 C5 DT DT DT 19 19 19 N 1 -3.82 0.60 119.90 116.08 B B B N3 C4 O4 DT DT DT 19 19 19 N 1 -5.55 0.40 104.50 98.95 B B B O4' C4' C3' DT DT DT 20 20 20 N 1 8.08 1.20 115.70 123.78 B B B C5' C4' C3' DT DT DT 20 20 20 N 1 3.52 0.30 108.30 111.82 B B B O4' C1' N1 DT DT DT 20 20 20 N 1 -9.11 1.50 119.60 110.49 B B B OP1 P OP2 DC DC DC 21 21 21 N 1 5.56 0.30 108.30 113.86 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 23.15 1.20 119.70 142.85 B B B C3' O3' P DC DC DG 21 21 22 Y 1 6.69 1.10 110.50 117.19 B B B O3' P OP1 DC DG DG 21 22 22 Y 1 -9.71 1.50 119.60 109.89 B B B OP1 P OP2 DG DG DG 22 22 22 N 1 -6.37 0.80 109.40 103.03 B B B O5' C5' C4' DG DG DG 22 22 22 N 1 -9.01 0.80 102.40 93.39 B B B C3' C2' C1' DG DG DG 22 22 22 N 1 8.39 0.30 108.30 116.69 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 -3.82 0.60 128.60 124.78 B B B C5 C6 O6 DG DG DG 22 22 22 N 1 -9.26 1.50 119.60 110.34 B B B OP1 P OP2 DC DC DC 23 23 23 N 1 -8.71 0.80 109.40 100.69 B B B O5' C5' C4' DC DC DC 23 23 23 N 1 9.67 0.30 108.30 117.97 B B B O4' C1' N1 DC DC DC 23 23 23 N 1 3.06 0.30 108.30 111.36 B B B O4' C1' N9 DG DG DG 24 24 24 N 1 -3.61 0.60 119.90 116.29 B B B N1 C6 O6 DG DG DG 24 24 24 N 1 A A O4' C4' DG DG 10 10 -0.072 0.010 1.446 1.374 N 1 B B O3' C3' DG DG 16 16 -0.036 0.006 1.419 1.383 N 1 B B P O5' DA DA 17 17 0.068 0.010 1.593 1.661 N 1 B B C5' C4' DA DA 17 17 -0.066 0.011 1.509 1.443 N 1 B B O3' C3' DC DC 21 21 -0.060 0.006 1.419 1.359 N 1 B B O3' P DC DG 21 22 -0.074 0.012 1.607 1.533 Y 1 B A OP1 O DG HOH 14 138 1.96 1_555 2_664 1 B A OP2 O DG HOH 24 130 2.03 1_555 3_655 1 A B OP1 O DG HOH 10 80 2.19 1_555 4_465 0.1720000 2.000 2000 1 2.000 TR isotropic TR isotropic 2.000 121 639 32 486 0 0.020 fix fix 2.000 127D 2000 2.000 1 refinement NUCLSQ DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') COMPLEXED WITH HOECHST 33258 1 N N 1 N N 2 N N 3 N N 3 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 127D PDB 1 127D 1 12 127D 1 12 127D A 1 1 12 13 24 127D 13 24 127D B 1 1 12 BINDING SITE FOR RESIDUE HT B 25 B HT 25 Software 13 A DA 5 A DA 5 13 1_555 A DA 6 A DA 6 13 1_555 A DT 7 A DT 7 13 1_555 A DT 8 A DT 8 13 1_555 A DC 9 A DC 9 13 1_555 A HOH 66 D HOH 13 3_645 B DA 17 B DA 5 13 1_555 B DA 18 B DA 6 13 1_555 B DT 19 B DT 7 13 1_555 B DT 20 B DT 8 13 1_555 B DC 21 B DC 9 13 1_555 B HOH 48 E HOH 13 2_664 B HOH 92 E HOH 13 1_555 19 P 21 21 21