11.01
18.405
10.091
33.312
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1
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1
1
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8.80
18.983
11.172
32.478
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1
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1
1
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8.04
18.085
12.426
32.548
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1
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1
1
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1
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7.47
16.811
12.052
32.052
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1
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1
1
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8.26
17.843
13.020
33.947
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1
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1
1
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8.14
17.870
14.462
33.922
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1
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1
1
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O
7.99
16.330
12.695
34.264
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1
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1
1
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6.80
15.756
12.659
32.776
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1
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1
1
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6.05
14.615
11.768
32.683
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1
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1
1
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N
5.50
13.384
12.330
32.755
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1
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1
1
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1
C
6.42
13.237
13.572
32.813
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1
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O2
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1
1
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O
5.66
12.269
11.549
32.700
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1
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N3
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1
1
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1
N
5.49
12.390
10.144
32.612
A
C4
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1
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C4
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1
1
1.00
1
C
5.09
11.241
9.449
32.632
A
N4
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1
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A
N4
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1
1
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1
N
5.29
13.690
9.581
32.568
A
C5
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1
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A
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1
1
1.00
1
C
6.11
14.747
10.358
32.609
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1
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1
1
1.00
1
C
9.35
19.217
15.269
34.241
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2
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1
2
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10.85
19.881
14.650
35.395
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2
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1
2
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10.62
18.700
16.565
34.279
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2
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1
2
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8.34
20.142
15.152
32.950
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2
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1
2
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7.14
19.665
15.658
31.697
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2
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1
2
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6.80
20.691
15.281
30.656
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2
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1
2
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6.95
20.825
13.809
30.633
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2
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1
2
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6.18
20.301
15.673
29.209
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2
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1
2
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6.11
21.063
16.844
28.884
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1
2
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6.82
20.780
14.521
28.323
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2
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1
2
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7.14
20.941
13.325
29.282
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2
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1
2
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6.46
19.947
12.279
29.145
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2
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1
2
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N
7.32
20.211
10.923
29.106
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2
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1
2
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1
C
7.67
19.098
10.227
29.052
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2
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1
2
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1
N
6.51
18.096
11.131
29.120
A
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2
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1
2
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1
C
7.04
16.697
10.993
29.089
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2
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1
2
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C
7.31
16.048
9.902
29.111
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2
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1
2
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O
6.32
15.942
12.136
29.144
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2
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1
2
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N
6.38
16.583
13.350
29.258
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2
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1
2
1.00
1
C
6.68
15.819
14.364
29.317
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2
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1
2
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N
6.43
17.868
13.586
29.255
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2
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1
2
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N
6.50
18.567
12.418
29.178
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2
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1
2
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C
5.79
20.355
18.288
28.715
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3
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1
3
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6.55
21.459
19.177
28.490
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3
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1
3
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O
7.68
19.406
18.500
29.775
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3
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1
3
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6.93
19.591
18.137
27.276
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3
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1
3
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6.88
19.424
19.240
26.353
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3
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1
3
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7.47
17.979
19.250
25.862
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3
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1
3
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7.43
17.746
17.971
25.130
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3
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1
3
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O
7.30
16.843
19.307
26.895
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3
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1
3
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8.36
15.722
19.940
26.357
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3
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1
3
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O
6.65
16.441
17.806
27.105
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3
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1
3
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6.49
16.564
17.315
25.635
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3
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A
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1
3
1.00
1
C
5.82
16.880
15.824
25.624
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3
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A
N1
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1
3
1.00
1
N
5.58
15.788
14.999
25.715
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C2
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3
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A
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1
3
1.00
1
C
6.77
14.657
15.380
25.783
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3
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1
3
1.00
1
O
5.80
16.110
13.680
25.758
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3
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N3
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1
3
1.00
1
N
5.88
17.373
13.203
25.695
A
C4
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3
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A
C4
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1
3
1.00
1
C
7.01
17.574
11.812
25.777
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N4
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3
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A
N4
DC
1
3
1.00
1
N
6.23
18.492
14.074
25.587
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C5
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3
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A
C5
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1
3
1.00
1
C
6.32
18.188
15.389
25.551
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C6
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3
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A
C6
DC
1
3
1.00
1
C
9.60
15.566
21.568
26.451
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P
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4
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A
P
DG
1
4
1.00
1
P
9.28
15.979
21.959
27.795
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4
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A
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DG
1
4
1.00
1
O
11.71
14.227
21.725
26.019
A
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4
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1
4
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O
9.31
16.483
22.213
25.331
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4
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1
4
1.00
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O
8.13
16.143
22.028
23.939
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4
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1
4
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C
7.55
17.355
22.517
23.136
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4
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1
4
1.00
1
C
8.28
18.557
21.787
23.448
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4
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1
4
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O
8.37
17.227
22.365
21.621
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4
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A
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1
4
1.00
1
C
10.64
16.575
23.607
21.144
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4
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1
4
1.00
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O
7.71
18.540
22.144
21.090
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4
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1
4
1.00
1
C
6.88
19.376
21.612
22.312
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4
ATOM
A
C1'
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1
4
1.00
1
C
6.47
19.769
20.221
22.237
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4
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1
4
1.00
1
N
6.77
21.046
19.822
22.204
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4
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A
C8
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1
4
1.00
1
C
6.73
21.171
18.483
22.135
A
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4
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A
N7
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1
4
1.00
1
N
5.66
19.860
18.089
22.168
A
C5
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4
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A
C5
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1
4
1.00
1
C
5.96
19.308
16.759
22.108
A
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4
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DG
1
4
1.00
1
C
6.71
20.030
15.709
22.091
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4
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A
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1
4
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1
O
5.30
18.000
16.684
22.135
A
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4
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1
4
1.00
1
N
5.90
17.200
17.767
22.213
A
C2
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4
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A
C2
DG
1
4
1.00
1
C
5.88
15.963
17.580
22.242
A
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4
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A
N2
DG
1
4
1.00
1
N
5.84
17.641
19.043
22.218
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4
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N3
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1
4
1.00
1
N
5.93
18.960
19.090
22.212
A
C4
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4
ATOM
A
C4
DG
1
4
1.00
1
C
11.44
15.287
23.653
20.334
A
P
DC
5
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A
P
DC
1
5
1.00
1
P
14.17
15.292
24.912
19.540
A
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5
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A
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1
5
1.00
1
O
15.14
14.162
23.454
21.119
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5
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1
5
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1
O
8.34
15.220
22.328
19.379
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5
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1
5
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O
7.41
14.408
22.331
18.200
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5
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A
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1
5
1.00
1
C
6.87
13.920
20.854
17.989
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5
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1
5
1.00
1
C
6.90
15.154
20.118
17.644
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5
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1
5
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O
7.30
13.344
20.203
19.269
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5
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1
5
1.00
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C
8.48
12.161
19.535
18.962
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5
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A
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1
5
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O
7.05
14.402
19.161
19.690
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5
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A
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1
5
1.00
1
C
6.58
15.055
18.844
18.352
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5
ATOM
A
C1'
DC
1
5
1.00
1
C
6.36
16.493
18.432
18.450
A
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5
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A
N1
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1
5
1.00
1
N
6.78
16.663
17.014
18.572
A
C2
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5
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A
C2
DC
1
5
1.00
1
C
7.54
15.694
16.263
18.580
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5
ATOM
A
O2
DC
1
5
1.00
1
O
7.23
17.941
16.606
18.668
A
N3
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5
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A
N3
DC
1
5
1.00
1
N
7.57
19.046
17.411
18.687
A
C4
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5
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A
C4
DC
1
5
1.00
1
C
7.88
20.299
16.883
18.790
A
N4
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5
ATOM
A
N4
DC
1
5
1.00
1
N
7.26
18.832
18.837
18.583
A
C5
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5
ATOM
A
C5
DC
1
5
1.00
1
C
6.44
17.575
19.240
18.489
A
C6
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5
ATOM
A
C6
DC
1
5
1.00
1
C
10.09
10.827
20.279
19.197
A
P
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6
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A
P
DG
1
6
1.00
1
P
11.89
10.880
20.830
20.583
A
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6
ATOM
A
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DG
1
6
1.00
1
O
11.32
9.775
19.497
18.787
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6
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1
6
1.00
1
O
9.74
10.823
21.548
18.172
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6
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A
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1
6
1.00
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O
8.48
10.440
21.329
16.816
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6
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A
C5'
DG
1
6
1.00
1
C
6.84
10.613
22.766
16.170
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6
ATOM
A
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1
6
1.00
1
C
7.13
11.945
23.161
16.111
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6
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A
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1
6
1.00
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O
7.93
10.183
22.658
14.654
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6
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A
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1
6
1.00
1
C
7.92
9.564
23.908
14.304
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6
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1
6
1.00
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O
7.55
11.478
22.430
13.955
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6
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A
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DG
1
6
1.00
1
C
6.42
12.448
23.318
14.738
A
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6
ATOM
A
C1'
DG
1
6
1.00
1
C
5.52
13.814
22.952
14.696
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N9
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6
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A
N9
DG
1
6
1.00
1
N
6.16
14.827
23.762
14.606
A
C8
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6
ATOM
A
C8
DG
1
6
1.00
1
C
6.96
16.056
23.240
14.625
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N7
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6
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A
N7
DG
1
6
1.00
1
N
6.48
15.692
21.876
14.678
A
C5
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6
ATOM
A
C5
DG
1
6
1.00
1
C
6.20
16.570
20.742
14.743
A
C6
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6
ATOM
A
C6
DG
1
6
1.00
1
C
7.46
17.807
20.779
14.747
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6
ATOM
A
O6
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1
6
1.00
1
O
5.42
15.946
19.550
14.818
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6
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N1
DG
1
6
1.00
1
N
5.86
14.598
19.469
14.871
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C2
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6
ATOM
A
C2
DG
1
6
1.00
1
C
6.04
14.070
18.295
14.974
A
N2
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6
ATOM
A
N2
DG
1
6
1.00
1
N
5.87
13.698
20.490
14.833
A
N3
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6
ATOM
A
N3
DG
1
6
1.00
1
N
5.82
14.363
21.651
14.742
A
C4
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6
ATOM
A
C4
DG
1
6
1.00
1
C
13.99
18.917
9.540
14.535
B
O5'
DC
7
ATOM
B
O5'
DC
1
1
1.00
1
O
10.41
19.079
10.968
14.977
B
C5'
DC
7
ATOM
B
C5'
DC
1
1
1.00
1
C
8.28
17.651
11.357
15.473
B
C4'
DC
7
ATOM
B
C4'
DC
1
1
1.00
1
C
7.52
17.843
12.697
16.073
B
O4'
DC
7
ATOM
B
O4'
DC
1
1
1.00
1
O
7.44
16.584
11.539
14.420
B
C3'
DC
7
ATOM
B
C3'
DC
1
1
1.00
1
C
7.73
15.311
11.396
14.852
B
O3'
DC
7
ATOM
B
O3'
DC
1
1
1.00
1
O
6.93
16.796
13.047
14.005
B
C2'
DC
7
ATOM
B
C2'
DC
1
1
1.00
1
C
6.48
16.977
13.627
15.458
B
C1'
DC
7
ATOM
B
C1'
DC
1
1
1.00
1
C
6.08
17.734
14.905
15.404
B
N1
DC
7
ATOM
B
N1
DC
1
1
1.00
1
N
5.97
16.936
16.018
15.211
B
C2
DC
7
ATOM
B
C2
DC
1
1
1.00
1
C
6.51
15.736
15.960
15.168
B
O2
DC
7
ATOM
B
O2
DC
1
1
1.00
1
O
6.26
17.619
17.222
15.141
B
N3
DC
7
ATOM
B
N3
DC
1
1
1.00
1
N
6.45
18.946
17.321
15.234
B
C4
DC
7
ATOM
B
C4
DC
1
1
1.00
1
C
7.12
19.550
18.531
15.139
B
N4
DC
7
ATOM
B
N4
DC
1
1
1.00
1
N
6.52
19.772
16.110
15.355
B
C5
DC
7
ATOM
B
C5
DC
1
1
1.00
1
C
6.07
19.098
14.966
15.438
B
C6
DC
7
ATOM
B
C6
DC
1
1
1.00
1
C
8.81
14.487
10.011
14.835
B
P
DG
8
ATOM
B
P
DG
1
2
1.00
1
P
9.48
14.746
9.401
13.579
B
OP1
DG
8
ATOM
B
OP1
DG
1
2
1.00
1
O
9.85
13.108
10.379
15.229
B
OP2
DG
8
ATOM
B
OP2
DG
1
2
1.00
1
O
8.09
15.215
9.055
15.890
B
O5'
DG
8
ATOM
B
O5'
DG
1
2
1.00
1
O
7.75
15.035
9.359
17.215
B
C5'
DG
8
ATOM
B
C5'
DG
1
2
1.00
1
C
7.57
15.978
8.404
18.021
B
C4'
DG
8
ATOM
B
C4'
DG
1
2
1.00
1
C
6.89
17.324
8.702
17.751
B
O4'
DG
8
ATOM
B
O4'
DG
1
2
1.00
1
O
8.21
15.872
8.610
19.602
B
C3'
DG
8
ATOM
B
C3'
DG
1
2
1.00
1
C
11.15
14.937
7.686
20.025
B
O3'
DG
8
ATOM
B
O3'
DG
1
2
1.00
1
O
7.67
17.226
8.422
20.114
B
C2'
DG
8
ATOM
B
C2'
DG
1
2
1.00
1
C
7.07
18.109
8.649
18.980
B
C1'
DG
8
ATOM
B
C1'
DG
1
2
1.00
1
C
7.25
18.922
9.835
18.950
B
N9
DG
8
ATOM
B
N9
DG
1
2
1.00
1
N
7.38
20.230
9.874
18.852
B
C8
DG
8
ATOM
B
C8
DG
1
2
1.00
1
C
7.88
20.779
11.085
18.764
B
N7
DG
8
ATOM
B
N7
DG
1
2
1.00
1
N
7.53
19.639
11.868
18.878
B
C5
DG
8
ATOM
B
C5
DG
1
2
1.00
1
C
6.95
19.501
13.317
18.868
B
C6
DG
8
ATOM
B
C6
DG
1
2
1.00
1
C
8.18
20.508
14.047
18.735
B
O6
DG
8
ATOM
B
O6
DG
1
2
1.00
1
O
7.05
18.258
13.761
18.907
B
N1
DG
8
ATOM
B
N1
DG
1
2
1.00
1
N
6.73
17.201
12.995
18.994
B
C2
DG
8
ATOM
B
C2
DG
1
2
1.00
1
C
7.31
16.039
13.459
18.996
B
N2
DG
8
ATOM
B
N2
DG
1
2
1.00
1
N
7.45
17.208
11.599
19.049
B
N3
DG
8
ATOM
B
N3
DG
1
2
1.00
1
N
6.70
18.470
11.173
18.938
B
C4
DG
8
ATOM
B
C4
DG
1
2
1.00
1
C
17.28
14.034
7.751
21.261
B
P
DC
9
ATOM
B
P
DC
1
3
1.00
1
P
17.49
15.009
7.922
22.320
B
OP1
DC
9
ATOM
B
OP1
DC
1
3
1.00
1
O
16.34
13.119
6.567
21.374
B
OP2
DC
9
ATOM
B
OP2
DC
1
3
1.00
1
O
11.78
13.220
9.117
21.376
B
O5'
DC
9
ATOM
B
O5'
DC
1
3
1.00
1
O
9.32
12.200
9.257
22.349
B
C5'
DC
9
ATOM
B
C5'
DC
1
3
1.00
1
C
7.72
11.949
10.836
22.482
B
C4'
DC
9
ATOM
B
C4'
DC
1
3
1.00
1
C
7.25
13.100
11.397
23.076
B
O4'
DC
9
ATOM
B
O4'
DC
1
3
1.00
1
O
7.48
11.777
11.512
21.091
B
C3'
DC
9
ATOM
B
C3'
DC
1
3
1.00
1
C
8.28
10.822
12.549
21.173
B
O3'
DC
9
ATOM
B
O3'
DC
1
3
1.00
1
O
6.76
13.121
12.155
20.823
B
C2'
DC
9
ATOM
B
C2'
DC
1
3
1.00
1
C
7.09
13.532
12.552
22.337
B
C1'
DC
9
ATOM
B
C1'
DC
1
3
1.00
1
C
6.53
15.038
12.634
22.398
B
N1
DC
9
ATOM
B
N1
DC
1
3
1.00
1
N
5.84
15.590
13.899
22.282
B
C2
DC
9
ATOM
B
C2
DC
1
3
1.00
1
C
7.67
14.867
14.878
22.207
B
O2
DC
9
ATOM
B
O2
DC
1
3
1.00
1
O
5.64
16.930
13.975
22.291
B
N3
DC
9
ATOM
B
N3
DC
1
3
1.00
1
N
5.98
17.776
12.892
22.350
B
C4
DC
9
ATOM
B
C4
DC
1
3
1.00
1
C
6.48
19.084
13.067
22.312
B
N4
DC
9
ATOM
B
N4
DC
1
3
1.00
1
N
6.37
17.173
11.578
22.483
B
C5
DC
9
ATOM
B
C5
DC
1
3
1.00
1
C
6.22
15.837
11.513
22.494
B
C6
DC
9
ATOM
B
C6
DC
1
3
1.00
1
C
8.80
9.284
12.216
20.882
B
P
DG
10
ATOM
B
P
DG
1
4
1.00
1
P
9.68
9.225
11.434
19.723
B
OP1
DG
10
ATOM
B
OP1
DG
1
4
1.00
1
O
10.29
8.659
13.546
20.938
B
OP2
DG
10
ATOM
B
OP2
DG
1
4
1.00
1
O
8.18
8.799
11.261
22.092
B
O5'
DG
10
ATOM
B
O5'
DG
1
4
1.00
1
O
6.38
8.724
11.881
23.367
B
C5'
DG
10
ATOM
B
C5'
DG
1
4
1.00
1
C
6.66
8.172
10.814
24.352
B
C4'
DG
10
ATOM
B
C4'
DG
1
4
1.00
1
C
6.19
9.149
9.716
24.407
B
O4'
DG
10
ATOM
B
O4'
DG
1
4
1.00
1
O
6.34
8.108
11.396
25.787
B
C3'
DG
10
ATOM
B
C3'
DG
1
4
1.00
1
C
7.31
6.763
11.748
26.009
B
O3'
DG
10
ATOM
B
O3'
DG
1
4
1.00
1
O
6.41
8.523
10.276
26.694
B
C2'
DG
10
ATOM
B
C2'
DG
1
4
1.00
1
C
5.50
9.340
9.361
25.830
B
C1'
DG
10
ATOM
B
C1'
DG
1
4
1.00
1
C
5.46
10.729
9.332
25.994
B
N9
DG
10
ATOM
B
N9
DG
1
4
1.00
1
N
5.30
11.482
8.201
26.114
B
C8
DG
10
ATOM
B
C8
DG
1
4
1.00
1
C
5.22
12.769
8.367
26.165
B
N7
DG
10
ATOM
B
N7
DG
1
4
1.00
1
N
5.14
12.865
9.761
26.059
B
C5
DG
10
ATOM
B
C5
DG
1
4
1.00
1
C
5.24
14.007
10.595
26.009
B
C6
DG
10
ATOM
B
C6
DG
1
4
1.00
1
C
7.08
15.203
10.222
26.060
B
O6
DG
10
ATOM
B
O6
DG
1
4
1.00
1
O
4.92
13.735
11.921
25.927
B
N1
DG
10
ATOM
B
N1
DG
1
4
1.00
1
N
4.69
12.503
12.400
25.802
B
C2
DG
10
ATOM
B
C2
DG
1
4
1.00
1
C
5.12
12.315
13.700
25.655
B
N2
DG
10
ATOM
B
N2
DG
1
4
1.00
1
N
4.58
11.364
11.707
25.821
B
N3
DG
10
ATOM
B
N3
DG
1
4
1.00
1
N
5.16
11.660
10.369
25.940
B
C4
DG
10
ATOM
B
C4
DG
1
4
1.00
1
C
7.38
6.351
13.198
26.575
B
P
DC
11
ATOM
B
P
DC
1
5
1.00
1
P
9.24
4.954
13.142
26.809
B
OP1
DC
11
ATOM
B
OP1
DC
1
5
1.00
1
O
8.76
6.878
14.173
25.630
B
OP2
DC
11
ATOM
B
OP2
DC
1
5
1.00
1
O
8.56
7.152
13.232
27.965
B
O5'
DC
11
ATOM
B
O5'
DC
1
5
1.00
1
O
6.68
6.789
14.029
29.075
B
C5'
DC
11
ATOM
B
C5'
DC
1
5
1.00
1
C
6.90
8.009
14.771
29.604
B
C4'
DC
11
ATOM
B
C4'
DC
1
5
1.00
1
C
6.52
8.979
13.833
30.087
B
O4'
DC
11
ATOM
B
O4'
DC
1
5
1.00
1
O
7.10
8.794
15.588
28.543
B
C3'
DC
11
ATOM
B
C3'
DC
1
5
1.00
1
C
7.84
9.236
16.827
29.169
B
O3'
DC
11
ATOM
B
O3'
DC
1
5
1.00
1
O
6.74
10.025
14.777
28.202
B
C2'
DC
11
ATOM
B
C2'
DC
1
5
1.00
1
C
6.53
10.248
14.148
29.589
B
C1'
DC
11
ATOM
B
C1'
DC
1
5
1.00
1
C
6.11
11.020
12.872
29.514
B
N1
DC
11
ATOM
B
N1
DC
1
5
1.00
1
N
5.58
12.346
12.980
29.416
B
C2
DC
11
ATOM
B
C2
DC
1
5
1.00
1
C
6.43
12.939
14.052
29.382
B
O2
DC
11
ATOM
B
O2
DC
1
5
1.00
1
O
5.54
13.080
11.823
29.351
B
N3
DC
11
ATOM
B
N3
DC
1
5
1.00
1
N
6.32
12.472
10.592
29.376
B
C4
DC
11
ATOM
B
C4
DC
1
5
1.00
1
C
6.17
13.297
9.511
29.306
B
N4
DC
11
ATOM
B
N4
DC
1
5
1.00
1
N
6.07
11.072
10.497
29.462
B
C5
DC
11
ATOM
B
C5
DC
1
5
1.00
1
C
6.57
10.367
11.632
29.514
B
C6
DC
11
ATOM
B
C6
DC
1
5
1.00
1
C
8.49
8.387
18.164
29.064
B
P
DG
12
ATOM
B
P
DG
1
6
1.00
1
P
8.70
7.994
18.343
27.713
B
OP1
DG
12
ATOM
B
OP1
DG
1
6
1.00
1
O
10.32
9.233
19.236
29.722
B
OP2
DG
12
ATOM
B
OP2
DG
1
6
1.00
1
O
8.67
6.998
17.967
29.834
B
O5'
DG
12
ATOM
B
O5'
DG
1
6
1.00
1
O
8.33
7.071
18.113
31.280
B
C5'
DG
12
ATOM
B
C5'
DG
1
6
1.00
1
C
7.84
5.722
17.682
31.810
B
C4'
DG
12
ATOM
B
C4'
DG
1
6
1.00
1
C
6.68
5.572
16.234
31.647
B
O4'
DG
12
ATOM
B
O4'
DG
1
6
1.00
1
O
8.62
5.506
17.937
33.348
B
C3'
DG
12
ATOM
B
C3'
DG
1
6
1.00
1
C
10.57
4.108
18.112
33.536
B
O3'
DG
12
ATOM
B
O3'
DG
1
6
1.00
1
O
7.50
5.974
16.632
33.987
B
C2'
DG
12
ATOM
B
C2'
DG
1
6
1.00
1
C
6.52
5.355
15.637
32.978
B
C1'
DG
12
ATOM
B
C1'
DG
1
6
1.00
1
C
6.30
5.989
14.335
32.943
B
N9
DG
12
ATOM
B
N9
DG
1
6
1.00
1
N
6.50
5.270
13.188
32.831
B
C8
DG
12
ATOM
B
C8
DG
1
6
1.00
1
C
6.77
6.058
12.109
32.748
B
N7
DG
12
ATOM
B
N7
DG
1
6
1.00
1
N
5.92
7.324
12.624
32.813
B
C5
DG
12
ATOM
B
C5
DG
1
6
1.00
1
C
5.97
8.597
12.005
32.798
B
C6
DG
12
ATOM
B
C6
DG
1
6
1.00
1
C
7.46
8.762
10.738
32.648
B
O6
DG
12
ATOM
B
O6
DG
1
6
1.00
1
O
5.82
9.682
12.782
32.909
B
N1
DG
12
ATOM
B
N1
DG
1
6
1.00
1
N
5.37
9.514
14.155
33.002
B
C2
DG
12
ATOM
B
C2
DG
1
6
1.00
1
C
5.96
10.593
14.805
33.023
B
N2
DG
12
ATOM
B
N2
DG
1
6
1.00
1
N
5.33
8.368
14.797
33.043
B
N3
DG
12
ATOM
B
N3
DG
1
6
1.00
1
N
5.71
7.313
13.996
32.959
B
C4
DG
12
ATOM
B
C4
DG
1
6
1.00
1
C
7.20
23.536
18.439
26.873
A
N1
SPM
13
HETATM
C
N1
SPM
2
1.00
1
N
7.06
23.455
17.020
26.268
A
C2
SPM
13
HETATM
C
C2
SPM
2
1.00
1
C
7.51
22.240
17.003
25.351
A
C3
SPM
13
HETATM
C
C3
SPM
2
1.00
1
C
8.62
21.893
15.530
24.867
A
C4
SPM
13
HETATM
C
C4
SPM
2
1.00
1
C
8.89
23.049
15.019
23.967
A
N5
SPM
13
HETATM
C
N5
SPM
2
1.00
1
N
9.65
22.416
13.743
23.242
A
C6
SPM
13
HETATM
C
C6
SPM
2
1.00
1
C
11.09
23.495
13.119
22.383
A
C7
SPM
13
HETATM
C
C7
SPM
2
1.00
1
C
10.02
22.920
12.276
21.221
A
C8
SPM
13
HETATM
C
C8
SPM
2
1.00
1
C
11.33
24.082
11.795
20.369
A
C9
SPM
13
HETATM
C
C9
SPM
2
1.00
1
C
10.86
23.509
10.751
19.354
A
N10
SPM
13
HETATM
C
N10
SPM
2
1.00
1
N
12.77
24.709
10.317
18.441
A
C11
SPM
13
HETATM
C
C11
SPM
2
1.00
1
C
12.36
24.031
9.361
17.322
A
C12
SPM
13
HETATM
C
C12
SPM
2
1.00
1
C
12.94
25.221
8.811
16.488
A
C13
SPM
13
HETATM
C
C13
SPM
2
1.00
1
C
11.66
24.826
7.810
15.432
A
N14
SPM
13
HETATM
C
N14
SPM
2
1.00
1
N
22.75
15.975
27.270
18.517
A
NA
NA
15
HETATM
D
NA
NA
3
1.00
1
NA
28.34
15.169
25.733
22.406
A
NA
NA
16
HETATM
E
NA
NA
3
1.00
1
NA
35.24
11.118
11.787
12.251
B
N1
SPM
14
HETATM
F
N1
SPM
2
1.00
1
N
34.69
10.870
13.187
11.692
B
C2
SPM
14
HETATM
F
C2
SPM
2
1.00
1
C
34.70
11.528
14.292
12.365
B
C3
SPM
14
HETATM
F
C3
SPM
2
1.00
1
C
34.40
13.063
14.339
12.344
B
C4
SPM
14
HETATM
F
C4
SPM
2
1.00
1
C
34.49
13.560
14.929
13.695
B
N5
SPM
14
HETATM
F
N5
SPM
2
1.00
1
N
34.35
12.736
14.535
14.925
B
C6
SPM
14
HETATM
F
C6
SPM
2
1.00
1
C
34.17
13.358
14.945
16.261
B
C7
SPM
14
HETATM
F
C7
SPM
2
1.00
1
C
34.29
12.229
15.123
17.343
B
C8
SPM
14
HETATM
F
C8
SPM
2
1.00
1
C
34.31
12.714
16.048
18.428
B
C9
SPM
14
HETATM
F
C9
SPM
2
1.00
1
C
34.07
13.122
15.589
19.780
B
N10
SPM
14
HETATM
F
N10
SPM
2
1.00
1
N
34.02
12.309
16.282
20.910
B
C11
SPM
14
HETATM
F
C11
SPM
2
1.00
1
C
34.33
10.807
15.947
20.796
B
C12
SPM
14
HETATM
F
C12
SPM
2
1.00
1
C
34.48
10.213
15.929
22.207
B
C13
SPM
14
HETATM
F
C13
SPM
2
1.00
1
C
35.09
8.644
15.828
22.267
B
N14
SPM
14
HETATM
F
N14
SPM
2
1.00
1
N
12.11
14.381
28.893
20.345
A
O
HOH
17
HETATM
G
O
HOH
4
1.00
1
O
30.12
17.011
27.355
21.071
A
O
HOH
18
HETATM
G
O
HOH
4
1.00
1
O
12.72
13.741
25.561
17.421
A
O
HOH
19
HETATM
G
O
HOH
4
1.00
1
O
18.61
18.317
28.312
16.989
A
O
HOH
20
HETATM
G
O
HOH
4
1.00
1
O
26.72
17.483
24.816
18.165
A
O
HOH
21
HETATM
G
O
HOH
4
1.00
1
O
21.81
13.375
27.153
24.036
A
O
HOH
22
HETATM
G
O
HOH
4
1.00
1
O
31.30
16.457
26.212
24.621
A
O
HOH
23
HETATM
G
O
HOH
4
1.00
1
O
33.56
12.840
24.679
23.419
A
O
HOH
24
HETATM
G
O
HOH
4
1.00
1
O
8.98
24.920
21.894
31.420
A
O
HOH
25
HETATM
G
O
HOH
4
1.00
1
O
20.09
11.258
17.641
16.346
A
O
HOH
27
HETATM
G
O
HOH
4
1.00
1
O
21.53
13.698
19.677
23.162
A
O
HOH
28
HETATM
G
O
HOH
4
1.00
1
O
9.44
22.443
20.846
30.554
A
O
HOH
31
HETATM
G
O
HOH
4
1.00
1
O
10.34
16.878
17.235
30.363
A
O
HOH
32
HETATM
G
O
HOH
4
1.00
1
O
15.36
5.117
15.817
15.457
A
O
HOH
35
HETATM
G
O
HOH
4
1.00
1
O
16.15
18.384
7.568
28.215
A
O
HOH
36
HETATM
G
O
HOH
4
1.00
1
O
18.87
23.368
9.300
13.752
A
O
HOH
37
HETATM
G
O
HOH
4
1.00
1
O
15.86
17.139
8.398
31.346
A
O
HOH
39
HETATM
G
O
HOH
4
1.00
1
O
18.43
21.002
11.734
25.801
A
O
HOH
42
HETATM
G
O
HOH
4
1.00
1
O
16.66
18.013
5.604
33.113
A
O
HOH
44
HETATM
G
O
HOH
4
1.00
1
O
19.45
15.653
6.123
30.921
A
O
HOH
45
HETATM
G
O
HOH
4
1.00
1
O
22.46
22.089
19.856
7.758
A
O
HOH
46
HETATM
G
O
HOH
4
1.00
1
O
35.10
21.685
8.764
25.973
A
O
HOH
47
HETATM
G
O
HOH
4
1.00
1
O
20.71
14.594
18.334
29.871
A
O
HOH
55
HETATM
G
O
HOH
4
1.00
1
O
43.36
12.373
17.955
26.041
A
O
HOH
58
HETATM
G
O
HOH
4
1.00
1
O
30.60
21.938
21.385
12.082
A
O
HOH
59
HETATM
G
O
HOH
4
1.00
1
O
28.32
18.792
21.986
17.458
A
O
HOH
60
HETATM
G
O
HOH
4
1.00
1
O
27.77
19.404
22.425
13.052
A
O
HOH
62
HETATM
G
O
HOH
4
1.00
1
O
21.77
20.045
19.253
32.547
A
O
HOH
64
HETATM
G
O
HOH
4
1.00
1
O
36.89
12.631
16.669
23.801
A
O
HOH
65
HETATM
G
O
HOH
4
1.00
1
O
23.32
12.497
21.985
22.394
A
O
HOH
66
HETATM
G
O
HOH
4
1.00
1
O
31.10
14.436
20.990
29.836
A
O
HOH
67
HETATM
G
O
HOH
4
1.00
1
O
32.96
8.759
17.934
16.245
A
O
HOH
68
HETATM
G
O
HOH
4
1.00
1
O
31.20
20.263
9.344
35.040
A
O
HOH
69
HETATM
G
O
HOH
4
1.00
1
O
24.07
23.566
11.809
14.787
A
O
HOH
70
HETATM
G
O
HOH
4
1.00
1
O
39.22
12.447
24.290
26.585
A
O
HOH
71
HETATM
G
O
HOH
4
1.00
1
O
37.23
18.958
26.278
19.653
A
O
HOH
72
HETATM
G
O
HOH
4
1.00
1
O
42.46
15.912
26.361
27.387
A
O
HOH
73
HETATM
G
O
HOH
4
1.00
1
O
45.45
23.200
9.808
23.933
A
O
HOH
74
HETATM
G
O
HOH
4
1.00
1
O
13.14
22.397
18.461
15.609
B
O
HOH
26
HETATM
H
O
HOH
4
1.00
1
O
13.81
11.915
6.932
29.479
B
O
HOH
29
HETATM
H
O
HOH
4
1.00
1
O
13.00
10.895
17.791
31.875
B
O
HOH
30
HETATM
H
O
HOH
4
1.00
1
O
11.62
16.905
5.597
12.242
B
O
HOH
33
HETATM
H
O
HOH
4
1.00
1
O
10.15
9.440
15.011
24.894
B
O
HOH
34
HETATM
H
O
HOH
4
1.00
1
O
34.79
23.184
15.524
19.540
B
O
HOH
38
HETATM
H
O
HOH
4
1.00
1
O
24.10
8.002
12.060
15.036
B
O
HOH
40
HETATM
H
O
HOH
4
1.00
1
O
19.11
20.288
10.591
22.829
B
O
HOH
41
HETATM
H
O
HOH
4
1.00
1
O
32.32
22.772
13.630
17.489
B
O
HOH
43
HETATM
H
O
HOH
4
1.00
1
O
29.04
18.504
9.231
9.735
B
O
HOH
48
HETATM
H
O
HOH
4
1.00
1
O
23.27
19.201
6.517
23.569
B
O
HOH
49
HETATM
H
O
HOH
4
1.00
1
O
33.75
12.486
20.521
32.392
B
O
HOH
50
HETATM
H
O
HOH
4
1.00
1
O
23.00
12.945
12.281
17.523
B
O
HOH
51
HETATM
H
O
HOH
4
1.00
1
O
41.53
25.629
14.935
18.921
B
O
HOH
52
HETATM
H
O
HOH
4
1.00
1
O
32.35
10.039
12.266
17.313
B
O
HOH
53
HETATM
H
O
HOH
4
1.00
1
O
18.31
13.293
16.487
28.022
B
O
HOH
54
HETATM
H
O
HOH
4
1.00
1
O
35.49
11.046
8.731
16.295
B
O
HOH
56
HETATM
H
O
HOH
4
1.00
1
O
46.23
17.236
8.158
23.378
B
O
HOH
57
HETATM
H
O
HOH
4
1.00
1
O
25.06
17.076
8.207
12.739
B
O
HOH
61
HETATM
H
O
HOH
4
1.00
1
O
45.32
12.270
19.632
28.079
B
O
HOH
63
HETATM
H
O
HOH
4
1.00
1
O
53.21
18.666
10.748
11.839
B
O
HOH
75
HETATM
H
O
HOH
4
1.00
1
O
41.09
11.904
7.109
10.932
B
O
HOH
76
HETATM
H
O
HOH
4
1.00
1
O
53.14
13.728
6.445
13.971
B
O
HOH
77
HETATM
H
O
HOH
4
1.00
1
O
40.96
11.165
9.310
11.800
B
O
HOH
78
HETATM
H
O
HOH
4
1.00
1
O
0.054750
0.000000
0.000000
0.000000
0.032584
0.000000
0.000000
0.000000
0.023552
0.00000
0.00000
0.00000
Bancroft, D.
Williams, L.D.
Rich, A.
Egli, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
18.265
30.690
42.460
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C10 H26 N4
202.340
SPERMINE
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
H
N
74
N
H
N
75
N
NA
N
76
N
N
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
N
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
C
N
85
N
N
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
N
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
33
1073
1086
10.1021/bi00171a005
8110738
The low-temperature crystal structure of the pure-spermine form of Z-DNA reveals binding of a spermine molecule in the minor groove.
1994
US
Biochemistry
BICHAW
0033
0006-2960
30
11388
11402
Structure of the Pure-Spermine Form of Z-DNA (Magnesium Free) at 1 Angstrom Resolution
1991
10.2210/pdb131d/pdb
pdb_0000131d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
163.00
1
DIFFRACTOMETER
RIGAKU AFC-5R
x-ray
1
1.0
ROTATING ANODE
1810.205
DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
2
syn
polymer
202.340
SPERMINE
2
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
18.015
water
62
nat
water
no
no
(DC)(DG)(DC)(DG)(DC)(DG)
CGCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
1.64
25.16
VAPOR DIFFUSION, SITTING DROP
7.00
pH 7.00, VAPOR DIFFUSION, SITTING DROP
ROOM TEMPERATURE
WATER
1
SPERMINE
1
WATER
2
MPD
2
1.469
1
19
A
1
B
12
2.981
A_DC1:DG12_B
1
-1.935
-0.205
0.074
-0.143
-3.397
1
19
A
2
B
11
2.149
A_DG2:DC11_B
2
2.759
0.260
0.083
-0.155
2.241
1
19
A
3
B
10
1.332
A_DC3:DG10_B
3
6.197
-0.298
0.043
-0.145
-5.393
1
19
A
4
B
9
2.912
A_DG4:DC9_B
4
4.600
0.303
0.020
-0.197
4.753
1
19
A
5
B
8
1.844
A_DC5:DG8_B
5
-6.535
-0.208
0.008
-0.225
-4.004
1
19
A
6
B
7
1.675
A_DG6:DC7_B
6
3.283
0.242
0.094
-0.165
4.626
-10.593
A
A
1
2
13.987
B
B
12
11
3.525
-2.544
0.260
5.420
AA_DC1DG2:DC11DG12_BB
1
1.786
9.815
-10.128
-23.951
5.201
3.178
-54.127
A
A
2
3
6.399
B
B
11
10
3.235
-5.813
0.611
-0.318
AA_DG2DC3:DG10DC11_BB
2
0.929
1.023
-53.830
0.700
0.728
2.407
-8.181
A
A
3
4
-10.489
B
B
10
9
3.612
1.478
-0.384
5.500
AA_DC3DG4:DC9DG10_BB
3
-1.660
-11.781
-7.874
-42.426
-7.043
3.265
-50.558
A
A
4
5
0.756
B
B
9
8
3.267
-0.646
-0.676
-1.071
AA_DG4DC5:DG8DC9_BB
4
0.872
1.021
-50.547
1.299
-0.730
3.637
-7.893
A
A
5
6
0.934
B
B
8
7
3.721
-0.127
0.047
5.475
AA_DC5DG6:DC7DG8_BB
5
2.283
16.824
-7.555
-39.334
8.227
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1993-10-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1993-06-18
REL
SPM
SPERMINE
NA
SODIUM ION
HOH
water
SPM
13
2
SPM
SPM
13
A
NA
15
3
NA
NA
15
A
NA
16
3
NA
NA
16
A
SPM
14
2
SPM
SPM
14
B
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
39
4
HOH
HOH
39
A
HOH
42
4
HOH
HOH
42
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
55
4
HOH
HOH
55
A
HOH
58
4
HOH
HOH
58
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
62
4
HOH
HOH
62
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
68
4
HOH
HOH
68
A
HOH
69
4
HOH
HOH
69
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
72
4
HOH
HOH
72
A
HOH
73
4
HOH
HOH
73
A
HOH
74
4
HOH
HOH
74
A
HOH
26
4
HOH
HOH
26
B
HOH
29
4
HOH
HOH
29
B
HOH
30
4
HOH
HOH
30
B
HOH
33
4
HOH
HOH
33
B
HOH
34
4
HOH
HOH
34
B
HOH
38
4
HOH
HOH
38
B
HOH
40
4
HOH
HOH
40
B
HOH
41
4
HOH
HOH
41
B
HOH
43
4
HOH
HOH
43
B
HOH
48
4
HOH
HOH
48
B
HOH
49
4
HOH
HOH
49
B
HOH
50
4
HOH
HOH
50
B
HOH
51
4
HOH
HOH
51
B
HOH
52
4
HOH
HOH
52
B
HOH
53
4
HOH
HOH
53
B
HOH
54
4
HOH
HOH
54
B
HOH
56
4
HOH
HOH
56
B
HOH
57
4
HOH
HOH
57
B
HOH
61
4
HOH
HOH
61
B
HOH
63
4
HOH
HOH
63
B
HOH
75
4
HOH
HOH
75
B
HOH
76
4
HOH
HOH
76
B
HOH
77
4
HOH
HOH
77
B
HOH
78
4
HOH
HOH
78
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
C
7
n
1
DC
7
B
G
8
n
2
DG
8
B
C
9
n
3
DC
9
B
G
10
n
4
DG
10
B
C
11
n
5
DC
11
B
G
12
n
6
DG
12
B
author_defined_assembly
2
dimeric
A
DG
4
A
O3'
DG
4
1_555
A
NA
16
E
NA
NA
1_555
A
DC
5
A
OP1
DC
5
1_555
49.3
A
DG
4
A
O3'
DG
4
1_555
A
NA
16
E
NA
NA
1_555
A
DC
5
A
OP2
DC
5
1_555
50.7
A
DC
5
A
OP1
DC
5
1_555
A
NA
16
E
NA
NA
1_555
A
DC
5
A
OP2
DC
5
1_555
49.5
A
DG
4
A
O3'
DG
4
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
18
G
O
HOH
1_555
84.0
A
DC
5
A
OP1
DC
5
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
18
G
O
HOH
1_555
70.9
A
DC
5
A
OP2
DC
5
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
18
G
O
HOH
1_555
119.3
A
DG
4
A
O3'
DG
4
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
22
G
O
HOH
1_555
162.0
A
DC
5
A
OP1
DC
5
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
22
G
O
HOH
1_555
136.3
A
DC
5
A
OP2
DC
5
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
22
G
O
HOH
1_555
116.6
A
HOH
18
G
O
HOH
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
22
G
O
HOH
1_555
113.9
A
DG
4
A
O3'
DG
4
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
23
G
O
HOH
1_555
105.7
A
DC
5
A
OP1
DC
5
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
23
G
O
HOH
1_555
147.8
A
DC
5
A
OP2
DC
5
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
23
G
O
HOH
1_555
135.8
A
HOH
18
G
O
HOH
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
23
G
O
HOH
1_555
88.5
A
HOH
22
G
O
HOH
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
23
G
O
HOH
1_555
74.3
A
DG
4
A
O3'
DG
4
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
24
G
O
HOH
1_555
107.2
A
DC
5
A
OP1
DC
5
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
24
G
O
HOH
1_555
106.5
A
DC
5
A
OP2
DC
5
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
24
G
O
HOH
1_555
63.5
A
HOH
18
G
O
HOH
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
24
G
O
HOH
1_555
163.1
A
HOH
22
G
O
HOH
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
24
G
O
HOH
1_555
55.9
A
HOH
23
G
O
HOH
1_555
A
NA
16
E
NA
NA
1_555
A
HOH
24
G
O
HOH
1_555
100.1
A
DC
5
A
OP1
DC
5
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
17
G
O
HOH
1_555
96.4
A
DC
5
A
OP1
DC
5
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
18
G
O
HOH
1_555
76.6
A
HOH
17
G
O
HOH
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
18
G
O
HOH
1_555
66.9
A
DC
5
A
OP1
DC
5
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
20
G
O
HOH
1_555
135.1
A
HOH
17
G
O
HOH
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
20
G
O
HOH
1_555
123.7
A
HOH
18
G
O
HOH
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
20
G
O
HOH
1_555
99.7
A
DC
5
A
OP1
DC
5
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
21
G
O
HOH
1_555
55.3
A
HOH
17
G
O
HOH
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
21
G
O
HOH
1_555
146.1
A
HOH
18
G
O
HOH
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
21
G
O
HOH
1_555
86.7
A
HOH
20
G
O
HOH
1_555
A
NA
15
D
NA
NA
1_555
A
HOH
21
G
O
HOH
1_555
79.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-3.51
0.40
121.90
118.39
A
A
A
N3
C4
C5
DC
DC
DC
1
1
1
N
1
5.22
0.70
120.20
125.42
A
A
A
C5
C4
N4
DC
DC
DC
1
1
1
N
1
-6.30
0.60
125.10
118.80
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
4.17
0.60
123.90
128.07
A
A
A
N1
C2
N3
DG
DG
DG
2
2
2
N
1
6.22
0.50
111.50
117.72
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-4.16
0.60
119.90
115.74
A
A
A
N1
C6
O6
DG
DG
DG
2
2
2
N
1
4.34
0.40
120.30
124.64
A
A
A
C6
N1
C2
DC
DC
DC
3
3
3
N
1
-5.78
0.70
119.20
113.42
A
A
A
N1
C2
N3
DC
DC
DC
3
3
3
N
1
4.34
0.50
119.90
124.24
A
A
A
C2
N3
C4
DC
DC
DC
3
3
3
N
1
5.52
0.60
118.90
124.42
A
A
A
N1
C2
O2
DC
DC
DC
3
3
3
N
1
4.24
0.50
111.50
115.74
A
A
A
C5
C6
N1
DG
DG
DG
4
4
4
N
1
4.46
0.40
110.80
115.26
A
A
A
C4
C5
N7
DG
DG
DG
4
4
4
N
1
-2.91
0.40
105.40
102.49
A
A
A
N9
C4
C5
DG
DG
DG
4
4
4
N
1
-5.65
0.60
128.60
122.95
A
A
A
C5
C6
O6
DG
DG
DG
4
4
4
N
1
-6.09
0.70
108.00
101.91
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-4.44
0.70
119.20
114.76
A
A
A
N1
C2
N3
DC
DC
DC
5
5
5
N
1
6.28
0.50
119.90
126.18
A
A
A
C2
N3
C4
DC
DC
DC
5
5
5
N
1
-4.51
0.40
121.90
117.39
A
A
A
N3
C4
C5
DC
DC
DC
5
5
5
N
1
4.50
0.50
121.00
125.50
A
A
A
C5
C6
N1
DC
DC
DC
5
5
5
N
1
-6.75
0.80
109.40
102.65
A
A
A
O5'
C5'
C4'
DG
DG
DG
6
6
6
N
1
-3.96
0.60
125.10
121.14
A
A
A
C6
N1
C2
DG
DG
DG
6
6
6
N
1
3.93
0.60
123.90
127.83
A
A
A
N1
C2
N3
DG
DG
DG
6
6
6
N
1
-3.04
0.50
111.90
108.86
A
A
A
C2
N3
C4
DG
DG
DG
6
6
6
N
1
3.21
0.50
111.50
114.71
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
3.82
0.40
110.80
114.62
A
A
A
C4
C5
N7
DG
DG
DG
6
6
6
N
1
-6.20
0.50
104.30
98.10
A
A
A
C5
N7
C8
DG
DG
DG
6
6
6
N
1
5.10
0.50
113.10
118.20
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
1
-5.46
0.70
119.90
114.44
A
A
A
N3
C2
N2
DG
DG
DG
6
6
6
N
1
-6.01
0.80
109.40
103.39
B
B
B
O5'
C5'
C4'
DC
DC
DC
7
7
7
N
1
-5.24
0.80
102.40
97.16
B
B
B
C3'
C2'
C1'
DC
DC
DC
7
7
7
N
1
2.64
0.40
120.30
122.94
B
B
B
C6
N1
C2
DC
DC
DC
7
7
7
N
1
-4.25
0.70
119.20
114.95
B
B
B
N1
C2
N3
DC
DC
DC
7
7
7
N
1
3.55
0.50
119.90
123.45
B
B
B
C2
N3
C4
DC
DC
DC
7
7
7
N
1
3.93
0.60
118.90
122.83
B
B
B
N1
C2
O2
DC
DC
DC
7
7
7
N
1
-3.24
0.50
111.90
108.66
B
B
B
C2
N3
C4
DG
DG
DG
8
8
8
N
1
3.57
0.50
111.50
115.07
B
B
B
C5
C6
N1
DG
DG
DG
8
8
8
N
1
4.10
0.40
110.80
114.90
B
B
B
C4
C5
N7
DG
DG
DG
8
8
8
N
1
-4.58
0.50
104.30
99.72
B
B
B
C5
N7
C8
DG
DG
DG
8
8
8
N
1
3.17
0.50
113.10
116.27
B
B
B
N7
C8
N9
DG
DG
DG
8
8
8
N
1
-3.32
0.40
105.40
102.08
B
B
B
N9
C4
C5
DG
DG
DG
8
8
8
N
1
6.03
0.90
116.20
122.23
B
B
B
N1
C2
N2
DG
DG
DG
8
8
8
N
1
-7.87
0.70
119.90
112.03
B
B
B
N3
C2
N2
DG
DG
DG
8
8
8
N
1
4.48
0.60
119.90
124.38
B
B
B
N1
C6
O6
DG
DG
DG
8
8
8
N
1
-8.24
0.60
128.60
120.36
B
B
B
C5
C6
O6
DG
DG
DG
8
8
8
N
1
8.46
1.20
119.70
128.16
B
B
B
C3'
O3'
P
DG
DG
DC
8
8
9
Y
1
4.83
0.50
119.90
124.73
B
B
B
C2
N3
C4
DC
DC
DC
9
9
9
N
1
-4.44
0.40
121.90
117.46
B
B
B
N3
C4
C5
DC
DC
DC
9
9
9
N
1
-3.06
0.50
111.90
108.84
B
B
B
C2
N3
C4
DG
DG
DG
10
10
10
N
1
3.12
0.50
111.50
114.62
B
B
B
C5
C6
N1
DG
DG
DG
10
10
10
N
1
-3.23
0.50
104.30
101.07
B
B
B
C5
N7
C8
DG
DG
DG
10
10
10
N
1
3.29
0.50
113.10
116.39
B
B
B
N7
C8
N9
DG
DG
DG
10
10
10
N
1
-6.87
0.70
119.90
113.03
B
B
B
N3
C2
N2
DG
DG
DG
10
10
10
N
1
4.73
0.60
118.90
123.63
B
B
B
N1
C2
O2
DC
DC
DC
11
11
11
N
1
-6.28
0.60
125.10
118.82
B
B
B
C6
N1
C2
DG
DG
DG
12
12
12
N
1
6.80
0.50
111.50
118.30
B
B
B
C5
C6
N1
DG
DG
DG
12
12
12
N
1
-5.42
0.60
128.60
123.18
B
B
B
C5
C6
O6
DG
DG
DG
12
12
12
N
1
A
A
C2'
C1'
DC
DC
1
1
0.076
0.010
1.519
1.595
N
1
A
A
N1
C6
DC
DC
1
1
0.051
0.006
1.367
1.418
N
1
A
A
N3
C4
DC
DC
1
1
0.078
0.007
1.335
1.413
N
1
A
A
C5
N7
DG
DG
2
2
-0.037
0.006
1.388
1.351
N
1
A
A
C2
N2
DG
DG
2
2
-0.070
0.010
1.341
1.271
N
1
A
A
C4
N4
DC
DC
3
3
0.073
0.009
1.335
1.408
N
1
A
A
C3'
C2'
DG
DG
4
4
-0.083
0.008
1.516
1.433
N
1
A
A
C6
N1
DG
DG
4
4
-0.081
0.007
1.391
1.310
N
1
A
A
N7
C8
DG
DG
4
4
0.042
0.006
1.305
1.347
N
1
A
A
C2
N2
DG
DG
4
4
-0.090
0.010
1.341
1.251
N
1
A
A
O3'
P
DG
DC
4
5
-0.085
0.012
1.607
1.522
Y
1
A
A
C5'
C4'
DC
DC
5
5
0.058
0.007
1.512
1.570
N
1
A
A
P
OP2
DG
DG
6
6
-0.112
0.017
1.485
1.373
N
1
A
A
C5'
C4'
DG
DG
6
6
0.073
0.007
1.512
1.585
N
1
A
A
C6
N1
DG
DG
6
6
-0.043
0.007
1.391
1.348
N
1
A
A
C8
N9
DG
DG
6
6
-0.074
0.007
1.374
1.300
N
1
B
B
C5'
C4'
DC
DC
7
7
0.049
0.007
1.512
1.561
N
1
B
B
O3'
C3'
DC
DC
7
7
-0.067
0.006
1.419
1.352
N
1
B
B
C5'
C4'
DG
DG
8
8
0.054
0.007
1.512
1.566
N
1
B
B
C4'
C3'
DG
DG
8
8
0.069
0.010
1.529
1.598
N
1
B
B
C3'
C2'
DG
DG
8
8
-0.056
0.008
1.516
1.460
N
1
B
B
C2'
C1'
DG
DG
8
8
-0.063
0.010
1.518
1.455
N
1
B
B
O3'
C3'
DG
DG
8
8
-0.038
0.006
1.419
1.381
N
1
B
B
N1
C2
DG
DG
8
8
-0.065
0.008
1.373
1.308
N
1
B
B
C2
N3
DG
DG
8
8
0.074
0.008
1.323
1.397
N
1
B
B
C6
N1
DG
DG
8
8
-0.071
0.007
1.391
1.320
N
1
B
B
C8
N9
DG
DG
8
8
-0.062
0.007
1.374
1.312
N
1
B
B
C2
N2
DG
DG
8
8
-0.090
0.010
1.341
1.251
N
1
B
B
O3'
P
DG
DC
8
9
-0.075
0.012
1.607
1.532
Y
1
B
B
C5'
C4'
DC
DC
9
9
0.092
0.007
1.512
1.604
N
1
B
B
C2'
C1'
DC
DC
9
9
0.099
0.010
1.519
1.618
N
1
B
B
N1
C2
DC
DC
11
11
-0.063
0.010
1.397
1.334
N
1
B
B
C6
N1
DG
DG
12
12
-0.052
0.007
1.391
1.339
N
1
B
B
C2
N2
DG
DG
12
12
-0.081
0.010
1.341
1.260
N
1
A
B
O
O
HOH
HOH
46
77
2.12
1_555
3_755
1
A
A
O
O
HOH
HOH
69
73
2.13
1_555
3_746
0.1800000
1.000
5.000
9575
1
2.000
TR
isotropic
TR
isotropic
TR
isotropic
1.000
5.000
62
332
30
240
0
0.030
fix
fix
fix
1.000
131D
14081
9691
2.000
1
refinement
PROLSQ
(MODIFIED BY G.J.QUIGLEY)
refinement
MODIFIED
BY G.J.QUIGLEY
THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
2
N
N
4
N
N
4
N
N
metalc
2.844
A
DG
4
A
O3'
DG
4
1_555
A
NA
16
E
NA
NA
1_555
metalc
2.660
A
DC
5
A
OP1
DC
5
1_555
A
NA
15
D
NA
NA
1_555
metalc
2.984
A
DC
5
A
OP1
DC
5
1_555
A
NA
16
E
NA
NA
1_555
metalc
2.804
A
DC
5
A
OP2
DC
5
1_555
A
NA
16
E
NA
NA
1_555
metalc
2.918
A
NA
15
D
NA
NA
1_555
A
HOH
17
G
O
HOH
1_555
metalc
2.757
A
NA
15
D
NA
NA
1_555
A
HOH
18
G
O
HOH
1_555
metalc
2.984
A
NA
15
D
NA
NA
1_555
A
HOH
20
G
O
HOH
1_555
metalc
2.902
A
NA
15
D
NA
NA
1_555
A
HOH
21
G
O
HOH
1_555
metalc
2.794
A
NA
16
E
NA
NA
1_555
A
HOH
18
G
O
HOH
1_555
metalc
2.809
A
NA
16
E
NA
NA
1_555
A
HOH
22
G
O
HOH
1_555
metalc
2.607
A
NA
16
E
NA
NA
1_555
A
HOH
23
G
O
HOH
1_555
metalc
2.750
A
NA
16
E
NA
NA
1_555
A
HOH
24
G
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
9
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
9
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
9
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
7
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
7
B
N4
DC
1
1_555
DNA
Z-DNA, DOUBLE HELIX, DNA
131D
PDB
1
131D
1
6
131D
1
6
131D
A
1
1
6
7
12
131D
7
12
131D
B
1
1
6
BINDING SITE FOR RESIDUE SPM A 13
A
SPM
13
Software
16
BINDING SITE FOR RESIDUE SPM B 14
B
SPM
14
Software
15
BINDING SITE FOR RESIDUE NA A 15
A
NA
15
Software
7
BINDING SITE FOR RESIDUE NA A 16
A
NA
16
Software
6
A
DG
2
A
DG
2
16
1_555
A
DG
2
A
DG
2
16
4_556
A
DC
3
A
DC
3
16
1_555
A
DG
4
A
DG
4
16
1_555
A
NA
15
D
NA
16
4_566
A
HOH
17
G
HOH
16
4_566
A
HOH
19
G
HOH
16
4_566
A
HOH
36
G
HOH
16
4_556
A
HOH
37
G
HOH
16
1_555
B
DG
8
B
DG
2
16
1_555
B
DC
9
B
DC
3
16
4_556
B
DC
9
B
DC
3
16
1_555
B
DG
10
B
DG
4
16
4_556
B
DG
10
B
DG
4
16
1_655
B
DC
11
B
DC
5
16
1_655
B
DG
12
B
DG
6
16
1_655
A
DC
1
A
DC
1
15
2_664
A
DG
2
A
DG
2
15
2_664
A
DC
5
A
DC
5
15
1_555
A
DG
6
A
DG
6
15
1_555
A
HOH
18
G
HOH
15
4_466
A
HOH
27
G
HOH
15
1_555
A
HOH
32
G
HOH
15
2_664
A
HOH
65
G
HOH
15
1_555
B
DC
7
B
DC
1
15
1_555
B
DG
8
B
DG
2
15
1_555
B
DC
9
B
DC
3
15
1_555
B
DG
10
B
DG
4
15
1_555
B
HOH
34
H
HOH
15
1_555
B
HOH
51
H
HOH
15
1_555
B
HOH
78
H
HOH
15
1_555
A
DC
5
A
DC
5
7
1_555
A
SPM
13
C
SPM
7
4_466
A
HOH
17
G
HOH
7
1_555
A
HOH
18
G
HOH
7
1_555
A
HOH
19
G
HOH
7
1_555
A
HOH
20
G
HOH
7
1_555
A
HOH
21
G
HOH
7
1_555
A
DG
4
A
DG
4
6
1_555
A
DC
5
A
DC
5
6
1_555
A
HOH
18
G
HOH
6
1_555
A
HOH
22
G
HOH
6
1_555
A
HOH
23
G
HOH
6
1_555
A
HOH
24
G
HOH
6
1_555
19
P 21 21 21