0.032680
0.000000
0.000000
0.000000
0.017762
0.000000
0.000000
0.000000
0.013661
0.00000
0.00000
0.00000
ATOM NZ OF LYS 1 HAS BEEN DIMETHYLATED AND THE N-TERMINUS HAS BEEN DIMETHYLATED.
ATOM NZ OF LYS 13, LYS 33, LYS 96, AND LYS 116 HAS BEEN DIMETHYLATED.
Rayment, I.
Rypniewski, W.R.
Holden, H.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
30.600
56.300
73.200
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H22 N2 O2
202.294
n
N~2~,N~2~,N~6~,N~6~-tetramethyl-L-lysine
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H18 N2 O2
174.241
n
N-DIMETHYL-LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
32
9851
9858
10.1021/bi00088a041
8373783
Structural consequences of reductive methylation of lysine residues in hen egg white lysozyme: an X-ray analysis at 1.8-A resolution.
1993
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
14494.441
HEN EGG WHITE LYSOZYME
3.2.1.17
1
man
polymer
18.015
water
78
nat
water
no
yes
(DM0)VFGRCELAAAM(MLY)RHGLDNYRGYSLGNWVCAA(MLY)FESNFNTQATNRNTDGSTDYGILQINSRWWCNDGR
TPGSRNLCNIPCSALLSSDITASVNCA(MLY)KIVSDGNGMNAWVAWRNRC(MLY)GTDVQAWIRGCRL
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
chicken
EGG WHITE
sample
9031
Gallus gallus
2.20
44.08
pdbx_database_status
struct_conf
struct_conf_type
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
1
0
1993-10-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1993-06-02
REL
HOH
water
HOH
131
2
HOH
HOH
131
A
HOH
132
2
HOH
HOH
132
A
HOH
133
2
HOH
HOH
133
A
HOH
134
2
HOH
HOH
134
A
HOH
135
2
HOH
HOH
135
A
HOH
136
2
HOH
HOH
136
A
HOH
137
2
HOH
HOH
137
A
HOH
138
2
HOH
HOH
138
A
HOH
139
2
HOH
HOH
139
A
HOH
140
2
HOH
HOH
140
A
HOH
141
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
143
2
HOH
HOH
143
A
HOH
144
2
HOH
HOH
144
A
HOH
145
2
HOH
HOH
145
A
HOH
146
2
HOH
HOH
146
A
HOH
147
2
HOH
HOH
147
A
HOH
148
2
HOH
HOH
148
A
HOH
149
2
HOH
HOH
149
A
HOH
150
2
HOH
HOH
150
A
HOH
151
2
HOH
HOH
151
A
HOH
152
2
HOH
HOH
152
A
HOH
153
2
HOH
HOH
153
A
HOH
154
2
HOH
HOH
154
A
HOH
155
2
HOH
HOH
155
A
HOH
156
2
HOH
HOH
156
A
HOH
157
2
HOH
HOH
157
A
HOH
158
2
HOH
HOH
158
A
HOH
159
2
HOH
HOH
159
A
HOH
160
2
HOH
HOH
160
A
HOH
161
2
HOH
HOH
161
A
HOH
162
2
HOH
HOH
162
A
HOH
163
2
HOH
HOH
163
A
HOH
164
2
HOH
HOH
164
A
HOH
165
2
HOH
HOH
165
A
HOH
166
2
HOH
HOH
166
A
HOH
167
2
HOH
HOH
167
A
HOH
168
2
HOH
HOH
168
A
HOH
169
2
HOH
HOH
169
A
HOH
170
2
HOH
HOH
170
A
HOH
171
2
HOH
HOH
171
A
HOH
172
2
HOH
HOH
172
A
HOH
173
2
HOH
HOH
173
A
HOH
174
2
HOH
HOH
174
A
HOH
175
2
HOH
HOH
175
A
HOH
176
2
HOH
HOH
176
A
HOH
177
2
HOH
HOH
177
A
HOH
178
2
HOH
HOH
178
A
HOH
179
2
HOH
HOH
179
A
HOH
180
2
HOH
HOH
180
A
HOH
181
2
HOH
HOH
181
A
HOH
182
2
HOH
HOH
182
A
HOH
183
2
HOH
HOH
183
A
HOH
184
2
HOH
HOH
184
A
HOH
185
2
HOH
HOH
185
A
HOH
186
2
HOH
HOH
186
A
HOH
187
2
HOH
HOH
187
A
HOH
188
2
HOH
HOH
188
A
HOH
189
2
HOH
HOH
189
A
HOH
190
2
HOH
HOH
190
A
HOH
191
2
HOH
HOH
191
A
HOH
192
2
HOH
HOH
192
A
HOH
193
2
HOH
HOH
193
A
HOH
194
2
HOH
HOH
194
A
HOH
195
2
HOH
HOH
195
A
HOH
196
2
HOH
HOH
196
A
HOH
197
2
HOH
HOH
197
A
HOH
198
2
HOH
HOH
198
A
HOH
199
2
HOH
HOH
199
A
HOH
200
2
HOH
HOH
200
A
HOH
201
2
HOH
HOH
201
A
HOH
202
2
HOH
HOH
202
A
HOH
203
2
HOH
HOH
203
A
HOH
204
2
HOH
HOH
204
A
HOH
205
2
HOH
HOH
205
A
HOH
206
2
HOH
HOH
206
A
HOH
207
2
HOH
HOH
207
A
HOH
208
2
HOH
HOH
208
A
DM0
1
n
1
DM0
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLY
4
n
4
GLY
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
ALA
11
n
11
ALA
11
A
MET
12
n
12
MET
12
A
MLY
13
n
13
MLY
13
A
ARG
14
n
14
ARG
14
A
HIS
15
n
15
HIS
15
A
GLY
16
n
16
GLY
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ASN
19
n
19
ASN
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
TYR
23
n
23
TYR
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
GLY
26
n
26
GLY
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
VAL
29
n
29
VAL
29
A
CYS
30
n
30
CYS
30
A
ALA
31
n
31
ALA
31
A
ALA
32
n
32
ALA
32
A
MLY
33
n
33
MLY
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
ASN
37
n
37
ASN
37
A
PHE
38
n
38
PHE
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
ASN
46
n
46
ASN
46
A
THR
47
n
47
THR
47
A
ASP
48
n
48
ASP
48
A
GLY
49
n
49
GLY
49
A
SER
50
n
50
SER
50
A
THR
51
n
51
THR
51
A
ASP
52
n
52
ASP
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
GLN
57
n
57
GLN
57
A
ILE
58
n
58
ILE
58
A
ASN
59
n
59
ASN
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
TRP
62
n
62
TRP
62
A
TRP
63
n
63
TRP
63
A
CYS
64
n
64
CYS
64
A
ASN
65
n
65
ASN
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
THR
69
n
69
THR
69
A
PRO
70
n
70
PRO
70
A
GLY
71
n
71
GLY
71
A
SER
72
n
72
SER
72
A
ARG
73
n
73
ARG
73
A
ASN
74
n
74
ASN
74
A
LEU
75
n
75
LEU
75
A
CYS
76
n
76
CYS
76
A
ASN
77
n
77
ASN
77
A
ILE
78
n
78
ILE
78
A
PRO
79
n
79
PRO
79
A
CYS
80
n
80
CYS
80
A
SER
81
n
81
SER
81
A
ALA
82
n
82
ALA
82
A
LEU
83
n
83
LEU
83
A
LEU
84
n
84
LEU
84
A
SER
85
n
85
SER
85
A
SER
86
n
86
SER
86
A
ASP
87
n
87
ASP
87
A
ILE
88
n
88
ILE
88
A
THR
89
n
89
THR
89
A
ALA
90
n
90
ALA
90
A
SER
91
n
91
SER
91
A
VAL
92
n
92
VAL
92
A
ASN
93
n
93
ASN
93
A
CYS
94
n
94
CYS
94
A
ALA
95
n
95
ALA
95
A
MLY
96
n
96
MLY
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
VAL
99
n
99
VAL
99
A
SER
100
n
100
SER
100
A
ASP
101
n
101
ASP
101
A
GLY
102
n
102
GLY
102
A
ASN
103
n
103
ASN
103
A
GLY
104
n
104
GLY
104
A
MET
105
n
105
MET
105
A
ASN
106
n
106
ASN
106
A
ALA
107
n
107
ALA
107
A
TRP
108
n
108
TRP
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
TRP
111
n
111
TRP
111
A
ARG
112
n
112
ARG
112
A
ASN
113
n
113
ASN
113
A
ARG
114
n
114
ARG
114
A
CYS
115
n
115
CYS
115
A
MLY
116
n
116
MLY
116
A
GLY
117
n
117
GLY
117
A
THR
118
n
118
THR
118
A
ASP
119
n
119
ASP
119
A
VAL
120
n
120
VAL
120
A
GLN
121
n
121
GLN
121
A
ALA
122
n
122
ALA
122
A
TRP
123
n
123
TRP
123
A
ILE
124
n
124
ILE
124
A
ARG
125
n
125
ARG
125
A
GLY
126
n
126
GLY
126
A
CYS
127
n
127
CYS
127
A
ARG
128
n
128
ARG
128
A
LEU
129
n
129
LEU
129
A
author_defined_assembly
1
monomeric
A
DM0
1
A
DM0
1
LYS
A
MLY
13
N-DIMETHYL-LYSINE
A
MLY
13
LYS
A
MLY
33
N-DIMETHYL-LYSINE
A
MLY
33
LYS
A
MLY
96
N-DIMETHYL-LYSINE
A
MLY
96
LYS
A
MLY
116
N-DIMETHYL-LYSINE
A
MLY
116
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
5.87
0.90
118.30
124.17
A
A
A
CB
CG
OD1
ASP
ASP
ASP
18
18
18
N
1
-6.28
0.90
118.30
112.02
A
A
A
CB
CG
OD2
ASP
ASP
ASP
18
18
18
N
1
3.34
0.50
120.30
123.64
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
21
21
21
N
1
-5.50
0.90
118.30
112.80
A
A
A
CB
CG
OD2
ASP
ASP
ASP
52
52
52
N
1
-5.75
0.90
118.30
112.55
A
A
A
CB
CG
OD2
ASP
ASP
ASP
66
66
66
N
1
6.15
0.90
118.30
124.45
A
A
A
CB
CG
OD1
ASP
ASP
ASP
87
87
87
N
1
-6.15
0.90
118.30
112.15
A
A
A
CB
CG
OD2
ASP
ASP
ASP
87
87
87
N
1
-5.80
0.90
118.30
112.50
A
A
A
CB
CG
OD2
ASP
ASP
ASP
119
119
119
N
1
A
ARG
68
-140.18
13.51
1
A
ASN
103
-67.07
8.94
0.173
1.8
30.
10796
1
1.8
30.
78
1091
0
0
1013
0.009
1.79
refinement
TNT
LYSOZYME (E.C.3.2.1.17)
STRUCTURAL CONSEQUENCES OF REDUCTIVE METHYLATION OF LYSINE RESIDUES IN HEN EGG WHITE LYSOZYME: AN X-RAY ANALYSIS AT 1.8 ANGSTROMS RESOLUTION
1
N
N
2
N
N
A
ARG
5
A
ARG
5
HELX_P
A
ARG
14
A
ARG
14
1
1
10
A
LEU
25
A
LEU
25
HELX_P
A
GLU
35
A
GLU
35
1
2
11
A
THR
89
A
THR
89
HELX_P
A
SER
100
A
SER
100
1
3
12
A
VAL
109
A
VAL
109
HELX_P
A
ASN
113
A
ASN
113
1
4
5
disulf
2.008
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
127
A
SG
CYS
127
1_555
disulf
2.048
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
115
A
SG
CYS
115
1_555
disulf
2.018
A
CYS
64
A
SG
CYS
64
1_555
A
CYS
80
A
SG
CYS
80
1_555
disulf
2.015
A
CYS
76
A
SG
CYS
76
1_555
A
CYS
94
A
SG
CYS
94
1_555
covale
1.334
A
DM0
1
A
C
DM0
1
1_555
A
VAL
2
A
N
VAL
2
1_555
covale
1.321
A
MET
12
A
C
MET
12
1_555
A
MLY
13
A
N
MLY
13
1_555
covale
1.318
A
MLY
13
A
C
MLY
13
1_555
A
ARG
14
A
N
ARG
14
1_555
covale
1.324
A
ALA
32
A
C
ALA
32
1_555
A
MLY
33
A
N
MLY
33
1_555
covale
1.344
A
MLY
33
A
C
MLY
33
1_555
A
PHE
34
A
N
PHE
34
1_555
covale
1.334
A
ALA
95
A
C
ALA
95
1_555
A
MLY
96
A
N
MLY
96
1_555
covale
1.341
A
MLY
96
A
C
MLY
96
1_555
A
LYS
97
A
N
LYS
97
1_555
covale
1.321
A
CYS
115
A
C
CYS
115
1_555
A
MLY
116
A
N
MLY
116
1_555
covale
1.325
A
MLY
116
A
C
MLY
116
1_555
A
GLY
117
A
N
GLY
117
1_555
HYDROLASE(O-GLYCOSYL)
HYDROLASE(O-GLYCOSYL)
LYSC_CHICK
UNP
1
19
P00698
19
147
132L
1
129
P00698
A
1
1
129
3
anti-parallel
anti-parallel
A
THR
43
A
THR
43
A
ARG
45
A
ARG
45
A
SER
50
A
SER
50
A
TYR
53
A
TYR
53
A
ILE
58
A
ILE
58
A
ASN
59
A
ASN
59
19
P 21 21 21