0.025569 0.014762 0.000000 0.000000 0.029524 0.000000 0.000000 0.000000 0.012621 0.00000 0.00000 0.00000 Ramakrishnan, B. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 39.110 39.110 79.230 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N H N 74 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing US Biochemistry BICHAW 0033 0006-2960 32 11458 11468 10.1021/bi00093a025 8218212 Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures. 1993 10.2210/pdb138d/pdb pdb_0000138d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 290.00 1 AREA DETECTOR SIEMENS x-ray 1 1.0 ROTATING ANODE 3046.980 DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3') 1 syn polymer 18.015 water 38 nat water no no (DG)(DC)(DG)(DG)(DG)(DC)(DC)(DC)(DG)(DC) GCGGGCCCGC A polydeoxyribonucleotide n n n n n n n n n n 2.87 57.15 VAPOR DIFFUSION, HANGING DROP 7.00 pH 7.00, VAPOR DIFFUSION, HANGING DROP WATER 1 NA CACODYLATE 1 [CO(NH3)6]CL3 1 WATER 2 MPD 2 -3.305 1 19 A 1 A 10 -4.078 A_DG1:DC10_A 1 -7.021 -0.287 -0.127 -0.216 -0.627 1 19 A 2 A 9 -1.069 A_DC2:DG9_A 2 -7.871 0.220 -0.085 -0.359 1.214 1 19 A 3 A 8 -2.546 A_DG3:DC8_A 3 -8.167 -0.103 -0.022 -0.299 10.461 1 19 A 4 A 7 1.514 A_DG4:DC7_A 4 -9.885 -0.143 0.168 -0.214 2.939 1 19 A 5 A 6 -3.332 A_DG5:DC6_A 5 -17.284 -0.428 -0.235 -0.141 -2.939 1 19 A 6 A 5 -3.332 A_DC6:DG5_A 6 -17.284 0.428 -0.235 -0.141 -10.461 1 19 A 7 A 4 1.514 A_DC7:DG4_A 7 -9.885 0.143 0.168 -0.214 -1.214 1 19 A 8 A 3 -2.546 A_DC8:DG3_A 8 -8.167 0.103 -0.022 -0.299 0.627 1 19 A 9 A 2 -1.069 A_DG9:DC2_A 9 -7.871 -0.220 -0.085 -0.359 3.305 1 19 A 10 A 1 -4.078 A_DC10:DG1_A 10 -7.021 0.287 -0.127 -0.216 3.166 32.875 A A 1 2 8.482 A A 10 9 3.327 4.784 0.476 -0.943 AA_DG1DC2:DG9DC10_AA 1 0.445 -0.790 32.531 -2.484 -0.765 2.500 35.412 A A 2 3 21.311 A A 9 8 3.224 12.692 -0.137 -1.500 AA_DC2DG3:DC8DG9_AA 2 -0.308 0.518 33.126 -4.158 0.184 2.697 26.155 A A 3 4 13.776 A A 8 7 3.120 6.151 -0.457 -1.604 AA_DG3DG4:DC7DC8_AA 3 -4.138 9.267 25.100 -5.061 -0.011 2.941 34.430 A A 4 5 19.196 A A 7 6 3.441 11.161 -0.878 -1.183 AA_DG4DG5:DC6DC7_AA 4 -2.268 3.901 32.546 -3.745 1.129 3.122 39.804 A A 5 6 10.757 A A 6 5 3.380 7.286 0.000 -1.172 AA_DG5DC6:DG5DC6_AA 5 0.000 0.000 39.159 -2.568 0.000 2.941 34.430 A A 6 7 19.195 A A 5 4 3.441 11.160 0.878 -1.183 AA_DC6DC7:DG4DG5_AA 6 2.268 -3.901 32.546 -3.745 -1.129 2.697 26.155 A A 7 8 13.776 A A 4 3 3.120 6.151 0.457 -1.604 AA_DC7DC8:DG3DG4_AA 7 4.138 -9.267 25.100 -5.061 0.011 2.500 35.412 A A 8 9 21.311 A A 3 2 3.224 12.692 0.137 -1.500 AA_DC8DG9:DC2DG3_AA 8 0.308 -0.518 33.126 -4.158 -0.184 3.166 32.875 A A 9 10 8.482 A A 2 1 3.327 4.784 -0.476 -0.943 AA_DG9DC10:DG1DC2_AA 9 -0.445 0.790 32.531 -2.484 0.765 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1994-01-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1993-09-15 REL REL HOH water HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A G 1 n 1 DG 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A G 5 n 5 DG 5 A C 6 n 6 DC 6 A C 7 n 7 DC 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A C 10 n 10 DC 10 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_555 -x+y,y,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 39.6150000000 1 A DG 3 0.076 SIDE CHAIN 1 A DG 4 0.097 SIDE CHAIN 1 A DC 6 0.070 SIDE CHAIN 1 A DC 7 0.075 SIDE CHAIN 1 A DG 9 0.090 SIDE CHAIN 1 -16.95 2.20 105.20 88.25 A A A O3' P OP2 DG DC DC 1 2 2 Y 1 -2.52 0.40 104.50 101.98 A A A O4' C4' C3' DC DC DC 2 2 2 N 1 -3.29 0.40 104.50 101.21 A A A O4' C4' C3' DG DG DG 3 3 3 N 1 -6.80 0.70 102.20 95.40 A A A C4' C3' C2' DG DG DG 4 4 4 N 1 4.74 0.30 108.30 113.04 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 8.71 1.10 110.50 119.21 A A A O3' P OP2 DG DG DG 4 5 5 Y 1 -20.91 2.20 105.20 84.29 A A A O3' P OP1 DG DG DG 4 5 5 Y 1 4.04 0.30 108.30 112.34 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 9.10 1.10 110.50 119.60 A A A O3' P OP2 DG DC DC 5 6 6 Y 1 -16.33 2.20 105.20 88.87 A A A O3' P OP1 DG DC DC 5 6 6 Y 1 -4.42 0.70 102.20 97.78 A A A C4' C3' C2' DC DC DC 6 6 6 N 1 14.24 1.90 104.00 118.24 A A A O3' P O5' DC DC DC 6 7 7 Y 1 -4.32 0.70 102.20 97.88 A A A C4' C3' C2' DC DC DC 7 7 7 N 1 3.90 0.30 108.30 112.20 A A A O4' C1' N1 DC DC DC 7 7 7 N 1 -5.24 0.80 109.40 104.16 A A A O5' C5' C4' DC DC DC 8 8 8 N 1 1.98 0.30 108.30 110.28 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 1.81 0.30 108.30 110.11 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 8.31 1.10 110.50 118.81 A A A O3' P OP2 DG DC DC 9 10 10 Y 1 -13.70 2.20 105.20 91.50 A A A O3' P OP1 DG DC DC 9 10 10 Y 1 A A C6 N1 DG DG 3 3 -0.042 0.007 1.391 1.349 N 0.1830000 0.1830000 1.800 8.000 2298 1 3.000 TR isotropic TR isotropic 1.800 8.000 38 240 0 202 0 0.017 3.60 31.9 3.90 fix fix 1.800 15.000 138D 3435 1 refinement X-PLOR A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 10 A N3 DC 10 11_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 10 A O2 DC 10 11_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 10 A N4 DC 10 11_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 A DG 9 A N1 DG 9 11_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 A DG 9 A O6 DG 9 11_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 A DG 9 A N2 DG 9 11_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 A DC 8 A N3 DC 8 11_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 A DC 8 A O2 DC 8 11_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 A DC 8 A N4 DC 8 11_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 A DC 7 A N3 DC 7 11_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 A DC 7 A O2 DC 7 11_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 A DC 7 A N4 DC 7 11_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 A DC 6 A N3 DC 6 11_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 A DC 6 A O2 DC 6 11_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 A DC 6 A N4 DC 6 11_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 5 A N1 DG 5 11_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 5 A O6 DG 5 11_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 5 A N2 DG 5 11_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 A DG 4 A N1 DG 4 11_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 A DG 4 A O6 DG 4 11_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 A DG 4 A N2 DG 4 11_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 3 A N1 DG 3 11_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 3 A O6 DG 3 11_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 3 A N2 DG 3 11_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 A DC 2 A N3 DC 2 11_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 A DC 2 A O2 DC 2 11_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 A DC 2 A N4 DC 2 11_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 A DG 1 A N1 DG 1 11_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 A DG 1 A O6 DG 1 11_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 A DG 1 A N2 DG 1 11_555 DNA A-DNA, DOUBLE HELIX, DNA 138D PDB 1 138D 1 10 138D 1 10 138D A 1 1 10 178 P 61 2 2