40.80
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A
O5'
DG
1
ATOM
A
O5'
DG
1
1
1.00
1
O
32.20
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A
C5'
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1
ATOM
A
C5'
DG
1
1
1.00
1
C
26.15
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A
C4'
DG
1
ATOM
A
C4'
DG
1
1
1.00
1
C
27.69
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A
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1
ATOM
A
O4'
DG
1
1
1.00
1
O
25.04
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A
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1
ATOM
A
C3'
DG
1
1
1.00
1
C
24.41
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A
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1
ATOM
A
O3'
DG
1
1
1.00
1
O
21.41
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13.954
A
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1
ATOM
A
C2'
DG
1
1
1.00
1
C
22.28
-8.848
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A
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1
ATOM
A
C1'
DG
1
1
1.00
1
C
21.48
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13.008
A
N9
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1
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A
N9
DG
1
1
1.00
1
N
23.30
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A
C8
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1
ATOM
A
C8
DG
1
1
1.00
1
C
22.71
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A
N7
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1
ATOM
A
N7
DG
1
1
1.00
1
N
20.95
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A
C5
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1
ATOM
A
C5
DG
1
1
1.00
1
C
21.64
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A
C6
DG
1
ATOM
A
C6
DG
1
1
1.00
1
C
24.70
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A
O6
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1
ATOM
A
O6
DG
1
1
1.00
1
O
21.41
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A
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1
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A
N1
DG
1
1
1.00
1
N
18.47
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A
C2
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1
ATOM
A
C2
DG
1
1
1.00
1
C
17.94
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A
N2
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1
ATOM
A
N2
DG
1
1
1.00
1
N
19.76
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A
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1
ATOM
A
N3
DG
1
1
1.00
1
N
19.56
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A
C4
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1
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A
C4
DG
1
1
1.00
1
C
33.80
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A
P
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2
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A
P
DC
1
2
1.00
1
P
37.95
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2
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A
OP1
DC
1
2
1.00
1
O
36.53
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A
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2
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A
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1
2
1.00
1
O
32.84
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2
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1
2
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25.01
-4.025
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2
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A
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1
2
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1
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23.23
-3.421
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2
ATOM
A
C4'
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1
2
1.00
1
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24.18
-4.443
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2
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1
2
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O
23.69
-2.439
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2
ATOM
A
C3'
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1
2
1.00
1
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31.14
-1.186
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2
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A
O3'
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1
2
1.00
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O
20.80
-2.395
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2
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A
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1
2
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1
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22.58
-3.865
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12.571
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2
ATOM
A
C1'
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1
2
1.00
1
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23.14
-4.555
21.386
12.985
A
N1
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2
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A
N1
DC
1
2
1.00
1
N
23.26
-4.366
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12.129
A
C2
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2
ATOM
A
C2
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1
2
1.00
1
C
22.26
-3.612
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2
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A
O2
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1
2
1.00
1
O
19.90
-5.030
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12.371
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N3
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2
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A
N3
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1
2
1.00
1
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20.66
-5.771
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13.463
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C4
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2
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A
C4
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1
2
1.00
1
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17.52
-6.502
24.839
13.568
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2
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N4
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1
2
1.00
1
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21.84
-5.968
22.669
14.382
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2
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A
C5
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1
2
1.00
1
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23.82
-5.435
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14.044
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C6
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2
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A
C6
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1
2
1.00
1
C
34.22
-0.230
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15.496
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3
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A
P
DG
1
3
1.00
1
P
38.19
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18.801
15.863
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3
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A
OP1
DG
1
3
1.00
1
O
33.09
-0.965
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3
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A
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1
3
1.00
1
O
27.77
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14.500
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3
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1
3
1.00
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22.90
1.344
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13.474
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3
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1
3
1.00
1
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23.41
1.594
21.544
12.550
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3
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A
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1
3
1.00
1
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27.45
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12.189
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3
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1
3
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25.09
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13.283
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3
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1
3
1.00
1
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28.96
3.569
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13.396
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3
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1
3
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O
26.32
1.836
23.816
12.362
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3
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1
3
1.00
1
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25.75
0.454
23.479
11.913
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3
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1
3
1.00
1
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21.20
-0.475
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12.788
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3
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A
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1
3
1.00
1
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18.65
-1.287
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13.746
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C8
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3
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1
3
1.00
1
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19.41
-2.157
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14.225
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3
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1
3
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1
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16.09
-2.009
25.598
13.433
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3
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A
C5
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1
3
1.00
1
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11.30
-2.749
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13.429
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3
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C6
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1
3
1.00
1
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18.82
-3.716
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14.106
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3
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1
3
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O
17.41
-2.265
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12.550
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3
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1
3
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1
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17.90
-1.202
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11.718
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3
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1
3
1.00
1
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21.30
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10.981
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3
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1
3
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1
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20.69
-0.537
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3
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1
3
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1
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20.92
-0.966
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3
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C4
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1
3
1.00
1
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34.60
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14.573
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4
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P
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1
4
1.00
1
P
42.80
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4
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OP1
DG
1
4
1.00
1
O
37.77
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15.822
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4
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1
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O
33.45
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14.144
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4
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1
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O
27.01
5.304
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13.010
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4
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C5'
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1
4
1.00
1
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30.32
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12.571
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4
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C4'
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1
4
1.00
1
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31.83
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4
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1
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O
31.17
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13.641
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4
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1
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1.00
1
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35.44
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13.638
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4
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1
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35.26
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13.018
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4
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1
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1.00
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32.37
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12.647
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4
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1
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1.00
1
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26.23
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13.762
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4
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1
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1.00
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25.81
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14.584
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4
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C8
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1
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1.00
1
C
26.06
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4
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N7
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1
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1.00
1
N
20.58
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C5
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4
ATOM
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C5
DG
1
4
1.00
1
C
21.27
-0.880
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C6
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4
ATOM
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C6
DG
1
4
1.00
1
C
19.85
-1.798
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15.974
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4
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O6
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1
4
1.00
1
O
19.53
-0.848
30.617
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N1
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4
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N1
DG
1
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1.00
1
N
17.40
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13.797
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4
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C2
DG
1
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1.00
1
C
18.28
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13.402
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4
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N2
DG
1
4
1.00
1
N
23.92
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13.407
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4
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N3
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1
4
1.00
1
N
22.61
1.140
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C4
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4
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C4
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1
4
1.00
1
C
37.48
7.146
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P
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5
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P
DG
1
5
1.00
1
P
42.01
8.427
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14.178
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5
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OP1
DG
1
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1.00
1
O
38.64
6.955
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16.244
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5
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1
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1.00
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O
41.44
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14.971
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5
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1
5
1.00
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33.16
7.392
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14.061
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5
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1
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1.00
1
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30.68
6.650
32.560
14.165
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5
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1
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1.00
1
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31.19
5.279
32.332
13.807
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5
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1
5
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28.76
6.615
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15.606
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5
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1
5
1.00
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24.89
7.744
33.883
15.916
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5
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1
5
1.00
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O
27.41
5.390
33.943
15.524
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5
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1
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27.75
4.455
33.093
14.696
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5
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C1'
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1
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1.00
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24.20
3.681
32.242
15.604
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5
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1
5
1.00
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N
21.74
3.737
30.905
15.860
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5
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C8
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1
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1.00
1
C
25.60
2.763
30.487
16.607
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5
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N7
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1
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1.00
1
N
20.65
1.947
31.607
16.754
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C5
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5
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C5
DG
1
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1.00
1
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21.50
0.741
31.777
17.471
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5
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C6
DG
1
5
1.00
1
C
23.47
0.123
30.947
18.135
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5
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DG
1
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1.00
1
O
19.38
0.312
33.090
17.424
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5
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DG
1
5
1.00
1
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19.64
0.948
34.124
16.761
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C2
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5
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C2
DG
1
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1.00
1
C
16.68
0.416
35.347
16.857
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5
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N2
DG
1
5
1.00
1
N
19.72
2.082
33.953
16.091
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5
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N3
DG
1
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1.00
1
N
22.61
2.528
32.684
16.166
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C4
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5
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C4
DG
1
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1.00
1
C
26.72
8.199
34.035
17.401
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P
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6
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P
DC
1
6
1.00
1
P
32.23
9.374
34.791
16.933
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6
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1
6
1.00
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O
27.74
8.367
32.838
18.234
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6
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1
6
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O
26.42
7.217
35.043
18.161
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6
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1
6
1.00
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O
20.76
7.200
36.415
17.836
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6
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1
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1.00
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18.08
6.002
37.038
18.456
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6
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C4'
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1
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1.00
1
C
20.64
4.832
36.332
18.000
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6
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1
6
1.00
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O
18.36
5.993
36.837
19.907
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6
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DC
1
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1.00
1
C
20.88
6.908
37.674
20.537
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6
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1
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1.00
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O
15.33
4.540
37.114
20.141
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6
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A
C2'
DC
1
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1.00
1
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19.91
3.872
36.281
19.056
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6
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A
C1'
DC
1
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1.00
1
C
21.87
3.608
34.855
19.409
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N1
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6
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A
N1
DC
1
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1.00
1
N
18.29
2.449
34.616
20.111
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6
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A
C2
DC
1
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1.00
1
C
23.46
1.786
35.541
20.564
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6
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A
O2
DC
1
6
1.00
1
O
20.36
2.071
33.349
20.300
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6
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N3
DC
1
6
1.00
1
N
20.81
2.903
32.351
20.036
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6
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A
C4
DC
1
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1.00
1
C
20.13
2.524
31.121
20.370
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N4
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6
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A
N4
DC
1
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1.00
1
N
17.34
4.156
32.563
19.399
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C5
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6
ATOM
A
C5
DC
1
6
1.00
1
C
18.93
4.405
33.816
19.002
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C6
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6
ATOM
A
C6
DC
1
6
1.00
1
C
30.24
7.449
37.319
21.993
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P
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7
ATOM
A
P
DC
1
7
1.00
1
P
29.97
8.254
38.554
22.162
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7
ATOM
A
OP1
DC
1
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1.00
1
O
31.90
8.117
35.999
21.867
A
OP2
DC
7
ATOM
A
OP2
DC
1
7
1.00
1
O
28.00
6.387
37.234
23.201
A
O5'
DC
7
ATOM
A
O5'
DC
1
7
1.00
1
O
29.85
5.574
38.366
23.497
A
C5'
DC
7
ATOM
A
C5'
DC
1
7
1.00
1
C
24.59
4.292
38.002
24.233
A
C4'
DC
7
ATOM
A
C4'
DC
1
7
1.00
1
C
21.11
3.482
37.116
23.459
A
O4'
DC
7
ATOM
A
O4'
DC
1
7
1.00
1
O
25.57
4.627
37.269
25.515
A
C3'
DC
7
ATOM
A
C3'
DC
1
7
1.00
1
C
29.99
5.086
38.187
26.507
A
O3'
DC
7
ATOM
A
O3'
DC
1
7
1.00
1
O
22.98
3.282
36.645
25.753
A
C2'
DC
7
ATOM
A
C2'
DC
1
7
1.00
1
C
20.38
2.899
36.156
24.353
A
C1'
DC
7
ATOM
A
C1'
DC
1
7
1.00
1
C
14.89
3.330
34.770
24.046
A
N1
DC
7
ATOM
A
N1
DC
1
7
1.00
1
N
17.34
2.504
33.799
24.506
A
C2
DC
7
ATOM
A
C2
DC
1
7
1.00
1
C
19.09
1.578
34.088
25.250
A
O2
DC
7
ATOM
A
O2
DC
1
7
1.00
1
O
16.61
2.722
32.532
24.142
A
N3
DC
7
ATOM
A
N3
DC
1
7
1.00
1
N
16.75
3.752
32.209
23.382
A
C4
DC
7
ATOM
A
C4
DC
1
7
1.00
1
C
19.34
3.855
30.952
22.982
A
N4
DC
7
ATOM
A
N4
DC
1
7
1.00
1
N
17.62
4.699
33.181
22.963
A
C5
DC
7
ATOM
A
C5
DC
1
7
1.00
1
C
16.23
4.413
34.459
23.277
A
C6
DC
7
ATOM
A
C6
DC
1
7
1.00
1
C
31.61
6.074
37.701
27.657
A
P
DC
8
ATOM
A
P
DC
1
8
1.00
1
P
32.57
6.488
38.871
28.442
A
OP1
DC
8
ATOM
A
OP1
DC
1
8
1.00
1
O
32.16
7.053
36.700
27.186
A
OP2
DC
8
ATOM
A
OP2
DC
1
8
1.00
1
O
22.93
4.957
36.950
28.472
A
O5'
DC
8
ATOM
A
O5'
DC
1
8
1.00
1
O
20.90
5.294
35.929
29.364
A
C5'
DC
8
ATOM
A
C5'
DC
1
8
1.00
1
C
21.44
4.003
35.240
29.633
A
C4'
DC
8
ATOM
A
C4'
DC
1
8
1.00
1
C
22.76
3.560
34.676
28.390
A
O4'
DC
8
ATOM
A
O4'
DC
1
8
1.00
1
O
24.98
4.176
34.056
30.530
A
C3'
DC
8
ATOM
A
C3'
DC
1
8
1.00
1
C
27.72
4.092
34.394
31.901
A
O3'
DC
8
ATOM
A
O3'
DC
1
8
1.00
1
O
20.52
2.994
33.272
30.134
A
C2'
DC
8
ATOM
A
C2'
DC
1
8
1.00
1
C
20.06
2.927
33.431
28.645
A
C1'
DC
8
ATOM
A
C1'
DC
1
8
1.00
1
C
20.10
3.643
32.348
27.964
A
N1
DC
8
ATOM
A
N1
DC
1
8
1.00
1
N
21.12
2.959
31.148
27.862
A
C2
DC
8
ATOM
A
C2
DC
1
8
1.00
1
C
20.78
1.875
30.992
28.414
A
O2
DC
8
ATOM
A
O2
DC
1
8
1.00
1
O
20.81
3.491
30.165
27.116
A
N3
DC
8
ATOM
A
N3
DC
1
8
1.00
1
N
18.20
4.626
30.359
26.454
A
C4
DC
8
ATOM
A
C4
DC
1
8
1.00
1
C
23.92
5.133
29.333
25.793
A
N4
DC
8
ATOM
A
N4
DC
1
8
1.00
1
N
22.56
5.307
31.620
26.452
A
C5
DC
8
ATOM
A
C5
DC
1
8
1.00
1
C
21.56
4.777
32.587
27.227
A
C6
DC
8
ATOM
A
C6
DC
1
8
1.00
1
C
28.68
5.059
33.657
32.917
A
P
DG
9
ATOM
A
P
DG
1
9
1.00
1
P
34.58
4.805
34.446
34.129
A
OP1
DG
9
ATOM
A
OP1
DG
1
9
1.00
1
O
31.72
6.437
33.452
32.414
A
OP2
DG
9
ATOM
A
OP2
DG
1
9
1.00
1
O
26.68
4.342
32.241
33.041
A
O5'
DG
9
ATOM
A
O5'
DG
1
9
1.00
1
O
27.93
3.108
32.140
33.713
A
C5'
DG
9
ATOM
A
C5'
DG
1
9
1.00
1
C
30.66
2.522
30.751
33.582
A
C4'
DG
9
ATOM
A
C4'
DG
1
9
1.00
1
C
30.43
2.377
30.399
32.217
A
O4'
DG
9
ATOM
A
O4'
DG
1
9
1.00
1
O
29.94
3.403
29.667
34.156
A
C3'
DG
9
ATOM
A
C3'
DG
1
9
1.00
1
C
33.09
3.235
29.599
35.555
A
O3'
DG
9
ATOM
A
O3'
DG
1
9
1.00
1
O
28.39
2.786
28.470
33.491
A
C2'
DG
9
ATOM
A
C2'
DG
1
9
1.00
1
C
27.13
2.598
28.993
32.091
A
C1'
DG
9
ATOM
A
C1'
DG
1
9
1.00
1
C
21.53
3.802
28.741
31.289
A
N9
DG
9
ATOM
A
N9
DG
1
9
1.00
1
N
15.03
4.715
29.615
30.756
A
C8
DG
9
ATOM
A
C8
DG
1
9
1.00
1
C
17.54
5.357
29.107
29.746
A
N7
DG
9
ATOM
A
N7
DG
1
9
1.00
1
N
16.95
4.806
27.839
29.565
A
C5
DG
9
ATOM
A
C5
DG
1
9
1.00
1
C
18.75
5.154
26.785
28.684
A
C6
DG
9
ATOM
A
C6
DG
1
9
1.00
1
C
22.30
6.022
26.759
27.824
A
O6
DG
9
ATOM
A
O6
DG
1
9
1.00
1
O
17.62
4.376
25.666
28.874
A
N1
DG
9
ATOM
A
N1
DG
1
9
1.00
1
N
16.49
3.416
25.538
29.847
A
C2
DG
9
ATOM
A
C2
DG
1
9
1.00
1
C
17.06
2.713
24.407
29.891
A
N2
DG
9
ATOM
A
N2
DG
1
9
1.00
1
N
19.05
3.166
26.488
30.741
A
N3
DG
9
ATOM
A
N3
DG
1
9
1.00
1
N
18.79
3.889
27.603
30.533
A
C4
DG
9
ATOM
A
C4
DG
1
9
1.00
1
C
36.61
4.445
29.107
36.477
A
P
DC
10
ATOM
A
P
DC
1
10
1.00
1
P
40.08
3.715
29.491
37.707
A
OP1
DC
10
ATOM
A
OP1
DC
1
10
1.00
1
O
39.59
5.812
29.634
36.209
A
OP2
DC
10
ATOM
A
OP2
DC
1
10
1.00
1
O
31.28
4.467
27.497
36.367
A
O5'
DC
10
ATOM
A
O5'
DC
1
10
1.00
1
O
25.12
3.364
26.741
36.834
A
C5'
DC
10
ATOM
A
C5'
DC
1
10
1.00
1
C
25.32
3.499
25.361
36.299
A
C4'
DC
10
ATOM
A
C4'
DC
1
10
1.00
1
C
26.96
3.512
25.458
34.873
A
O4'
DC
10
ATOM
A
O4'
DC
1
10
1.00
1
O
24.45
4.882
24.819
36.619
A
C3'
DC
10
ATOM
A
C3'
DC
1
10
1.00
1
C
30.68
5.090
24.453
37.985
A
O3'
DC
10
ATOM
A
O3'
DC
1
10
1.00
1
O
22.95
4.934
23.722
35.609
A
C2'
DC
10
ATOM
A
C2'
DC
1
10
1.00
1
C
22.85
4.326
24.394
34.368
A
C1'
DC
10
ATOM
A
C1'
DC
1
10
1.00
1
C
19.54
5.316
24.958
33.431
A
N1
DC
10
ATOM
A
N1
DC
1
10
1.00
1
N
20.19
5.703
24.123
32.422
A
C2
DC
10
ATOM
A
C2
DC
1
10
1.00
1
C
22.69
5.289
22.972
32.433
A
O2
DC
10
ATOM
A
O2
DC
1
10
1.00
1
O
18.28
6.526
24.594
31.454
A
N3
DC
10
ATOM
A
N3
DC
1
10
1.00
1
N
20.35
7.004
25.844
31.526
A
C4
DC
10
ATOM
A
C4
DC
1
10
1.00
1
C
16.97
7.786
26.310
30.548
A
N4
DC
10
ATOM
A
N4
DC
1
10
1.00
1
N
18.52
6.675
26.705
32.615
A
C5
DC
10
ATOM
A
C5
DC
1
10
1.00
1
C
22.14
5.772
26.242
33.496
A
C6
DC
10
ATOM
A
C6
DC
1
10
1.00
1
C
48.69
8.144
28.059
27.328
A
O
HOH
11
HETATM
B
O
HOH
2
1.00
1
O
67.72
-1.384
21.273
9.423
A
O
HOH
12
HETATM
B
O
HOH
2
1.00
1
O
53.44
3.373
31.385
11.058
A
O
HOH
13
HETATM
B
O
HOH
2
1.00
1
O
43.48
6.729
30.739
18.334
A
O
HOH
14
HETATM
B
O
HOH
2
1.00
1
O
54.71
0.615
38.409
20.866
A
O
HOH
15
HETATM
B
O
HOH
2
1.00
1
O
67.84
7.456
30.266
33.876
A
O
HOH
16
HETATM
B
O
HOH
2
1.00
1
O
63.93
10.042
37.561
15.380
A
O
HOH
17
HETATM
B
O
HOH
2
1.00
1
O
45.90
6.421
30.212
20.963
A
O
HOH
18
HETATM
B
O
HOH
2
1.00
1
O
62.53
7.571
34.671
24.786
A
O
HOH
19
HETATM
B
O
HOH
2
1.00
1
O
59.21
-7.095
22.274
17.348
A
O
HOH
20
HETATM
B
O
HOH
2
1.00
1
O
77.43
0.888
26.128
32.281
A
O
HOH
21
HETATM
B
O
HOH
2
1.00
1
O
71.85
-11.562
24.622
14.830
A
O
HOH
22
HETATM
B
O
HOH
2
1.00
1
O
96.12
-3.857
15.740
19.755
A
O
HOH
23
HETATM
B
O
HOH
2
1.00
1
O
58.28
-8.100
16.902
19.709
A
O
HOH
24
HETATM
B
O
HOH
2
1.00
1
O
100.44
4.393
29.021
18.614
A
O
HOH
25
HETATM
B
O
HOH
2
1.00
1
O
67.07
-4.341
20.626
18.291
A
O
HOH
26
HETATM
B
O
HOH
2
1.00
1
O
75.80
0.932
24.169
34.520
A
O
HOH
27
HETATM
B
O
HOH
2
1.00
1
O
69.23
7.875
30.411
29.640
A
O
HOH
28
HETATM
B
O
HOH
2
1.00
1
O
89.07
10.692
30.345
16.278
A
O
HOH
29
HETATM
B
O
HOH
2
1.00
1
O
66.52
11.028
36.106
19.972
A
O
HOH
30
HETATM
B
O
HOH
2
1.00
1
O
80.01
1.359
26.872
9.808
A
O
HOH
31
HETATM
B
O
HOH
2
1.00
1
O
52.20
-8.201
24.812
15.778
A
O
HOH
32
HETATM
B
O
HOH
2
1.00
1
O
65.11
-4.708
26.031
16.319
A
O
HOH
33
HETATM
B
O
HOH
2
1.00
1
O
85.38
8.443
34.456
30.664
A
O
HOH
34
HETATM
B
O
HOH
2
1.00
1
O
88.57
8.039
33.841
28.068
A
O
HOH
35
HETATM
B
O
HOH
2
1.00
1
O
65.65
7.729
33.170
21.112
A
O
HOH
36
HETATM
B
O
HOH
2
1.00
1
O
110.24
6.866
36.144
33.434
A
O
HOH
37
HETATM
B
O
HOH
2
1.00
1
O
87.21
8.608
37.801
31.316
A
O
HOH
38
HETATM
B
O
HOH
2
1.00
1
O
58.66
-0.092
31.828
30.285
A
O
HOH
39
HETATM
B
O
HOH
2
1.00
1
O
107.92
8.783
23.862
15.220
A
O
HOH
40
HETATM
B
O
HOH
2
1.00
1
O
59.40
-3.902
23.093
16.681
A
O
HOH
41
HETATM
B
O
HOH
2
1.00
1
O
116.93
12.322
33.418
18.994
A
O
HOH
42
HETATM
B
O
HOH
2
1.00
1
O
84.47
9.173
28.778
32.008
A
O
HOH
43
HETATM
B
O
HOH
2
1.00
1
O
117.19
10.259
32.302
20.819
A
O
HOH
44
HETATM
B
O
HOH
2
1.00
1
O
81.09
5.174
40.664
31.066
A
O
HOH
45
HETATM
B
O
HOH
2
1.00
1
O
93.79
6.735
23.109
17.714
A
O
HOH
46
HETATM
B
O
HOH
2
1.00
1
O
112.58
10.793
26.630
15.763
A
O
HOH
47
HETATM
B
O
HOH
2
1.00
1
O
88.33
-4.005
20.595
21.313
A
O
HOH
48
HETATM
B
O
HOH
2
1.00
1
O
0.025569
0.014762
0.000000
0.000000
0.029524
0.000000
0.000000
0.000000
0.012621
0.00000
0.00000
0.00000
Ramakrishnan, B.
Sundaralingam, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
39.110
39.110
79.230
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
H
N
74
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
32
11458
11468
10.1021/bi00093a025
8218212
Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures.
1993
10.2210/pdb138d/pdb
pdb_0000138d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
290.00
1
AREA DETECTOR
SIEMENS
x-ray
1
1.0
ROTATING ANODE
3046.980
DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3')
1
syn
polymer
18.015
water
38
nat
water
no
no
(DG)(DC)(DG)(DG)(DG)(DC)(DC)(DC)(DG)(DC)
GCGGGCCCGC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
2.87
57.15
VAPOR DIFFUSION, HANGING DROP
7.00
pH 7.00, VAPOR DIFFUSION, HANGING DROP
WATER
1
NA CACODYLATE
1
[CO(NH3)6]CL3
1
WATER
2
MPD
2
-3.305
1
19
A
1
A
10
-4.078
A_DG1:DC10_A
1
-7.021
-0.287
-0.127
-0.216
-0.627
1
19
A
2
A
9
-1.069
A_DC2:DG9_A
2
-7.871
0.220
-0.085
-0.359
1.214
1
19
A
3
A
8
-2.546
A_DG3:DC8_A
3
-8.167
-0.103
-0.022
-0.299
10.461
1
19
A
4
A
7
1.514
A_DG4:DC7_A
4
-9.885
-0.143
0.168
-0.214
2.939
1
19
A
5
A
6
-3.332
A_DG5:DC6_A
5
-17.284
-0.428
-0.235
-0.141
-2.939
1
19
A
6
A
5
-3.332
A_DC6:DG5_A
6
-17.284
0.428
-0.235
-0.141
-10.461
1
19
A
7
A
4
1.514
A_DC7:DG4_A
7
-9.885
0.143
0.168
-0.214
-1.214
1
19
A
8
A
3
-2.546
A_DC8:DG3_A
8
-8.167
0.103
-0.022
-0.299
0.627
1
19
A
9
A
2
-1.069
A_DG9:DC2_A
9
-7.871
-0.220
-0.085
-0.359
3.305
1
19
A
10
A
1
-4.078
A_DC10:DG1_A
10
-7.021
0.287
-0.127
-0.216
3.166
32.875
A
A
1
2
8.482
A
A
10
9
3.327
4.784
0.476
-0.943
AA_DG1DC2:DG9DC10_AA
1
0.445
-0.790
32.531
-2.484
-0.765
2.500
35.412
A
A
2
3
21.311
A
A
9
8
3.224
12.692
-0.137
-1.500
AA_DC2DG3:DC8DG9_AA
2
-0.308
0.518
33.126
-4.158
0.184
2.697
26.155
A
A
3
4
13.776
A
A
8
7
3.120
6.151
-0.457
-1.604
AA_DG3DG4:DC7DC8_AA
3
-4.138
9.267
25.100
-5.061
-0.011
2.941
34.430
A
A
4
5
19.196
A
A
7
6
3.441
11.161
-0.878
-1.183
AA_DG4DG5:DC6DC7_AA
4
-2.268
3.901
32.546
-3.745
1.129
3.122
39.804
A
A
5
6
10.757
A
A
6
5
3.380
7.286
0.000
-1.172
AA_DG5DC6:DG5DC6_AA
5
0.000
0.000
39.159
-2.568
0.000
2.941
34.430
A
A
6
7
19.195
A
A
5
4
3.441
11.160
0.878
-1.183
AA_DC6DC7:DG4DG5_AA
6
2.268
-3.901
32.546
-3.745
-1.129
2.697
26.155
A
A
7
8
13.776
A
A
4
3
3.120
6.151
0.457
-1.604
AA_DC7DC8:DG3DG4_AA
7
4.138
-9.267
25.100
-5.061
0.011
2.500
35.412
A
A
8
9
21.311
A
A
3
2
3.224
12.692
0.137
-1.500
AA_DC8DG9:DC2DG3_AA
8
0.308
-0.518
33.126
-4.158
-0.184
3.166
32.875
A
A
9
10
8.482
A
A
2
1
3.327
4.784
-0.476
-0.943
AA_DG9DC10:DG1DC2_AA
9
-0.445
0.790
32.531
-2.484
0.765
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1994-01-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1993-09-15
REL
REL
HOH
water
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
HOH
46
2
HOH
HOH
46
A
HOH
47
2
HOH
HOH
47
A
HOH
48
2
HOH
HOH
48
A
G
1
n
1
DG
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
G
5
n
5
DG
5
A
C
6
n
6
DC
6
A
C
7
n
7
DC
7
A
C
8
n
8
DC
8
A
G
9
n
9
DG
9
A
C
10
n
10
DC
10
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_555
-x+y,y,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
39.6150000000
1
A
DG
3
0.076
SIDE CHAIN
1
A
DG
4
0.097
SIDE CHAIN
1
A
DC
6
0.070
SIDE CHAIN
1
A
DC
7
0.075
SIDE CHAIN
1
A
DG
9
0.090
SIDE CHAIN
1
-16.95
2.20
105.20
88.25
A
A
A
O3'
P
OP2
DG
DC
DC
1
2
2
Y
1
-2.52
0.40
104.50
101.98
A
A
A
O4'
C4'
C3'
DC
DC
DC
2
2
2
N
1
-3.29
0.40
104.50
101.21
A
A
A
O4'
C4'
C3'
DG
DG
DG
3
3
3
N
1
-6.80
0.70
102.20
95.40
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
1
4.74
0.30
108.30
113.04
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
8.71
1.10
110.50
119.21
A
A
A
O3'
P
OP2
DG
DG
DG
4
5
5
Y
1
-20.91
2.20
105.20
84.29
A
A
A
O3'
P
OP1
DG
DG
DG
4
5
5
Y
1
4.04
0.30
108.30
112.34
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
9.10
1.10
110.50
119.60
A
A
A
O3'
P
OP2
DG
DC
DC
5
6
6
Y
1
-16.33
2.20
105.20
88.87
A
A
A
O3'
P
OP1
DG
DC
DC
5
6
6
Y
1
-4.42
0.70
102.20
97.78
A
A
A
C4'
C3'
C2'
DC
DC
DC
6
6
6
N
1
14.24
1.90
104.00
118.24
A
A
A
O3'
P
O5'
DC
DC
DC
6
7
7
Y
1
-4.32
0.70
102.20
97.88
A
A
A
C4'
C3'
C2'
DC
DC
DC
7
7
7
N
1
3.90
0.30
108.30
112.20
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
-5.24
0.80
109.40
104.16
A
A
A
O5'
C5'
C4'
DC
DC
DC
8
8
8
N
1
1.98
0.30
108.30
110.28
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
1.81
0.30
108.30
110.11
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
8.31
1.10
110.50
118.81
A
A
A
O3'
P
OP2
DG
DC
DC
9
10
10
Y
1
-13.70
2.20
105.20
91.50
A
A
A
O3'
P
OP1
DG
DC
DC
9
10
10
Y
1
A
A
C6
N1
DG
DG
3
3
-0.042
0.007
1.391
1.349
N
0.1830000
0.1830000
1.800
8.000
2298
1
3.000
TR
isotropic
TR
isotropic
1.800
8.000
38
240
0
202
0
0.017
3.60
31.9
3.90
fix
fix
1.800
15.000
138D
3435
1
refinement
X-PLOR
A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
10
A
N3
DC
10
11_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
10
A
O2
DC
10
11_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
10
A
N4
DC
10
11_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
A
DG
9
A
N1
DG
9
11_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
A
DG
9
A
O6
DG
9
11_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
A
DG
9
A
N2
DG
9
11_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
A
DC
8
A
N3
DC
8
11_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
A
DC
8
A
O2
DC
8
11_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
A
DC
8
A
N4
DC
8
11_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
A
DC
7
A
N3
DC
7
11_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
A
DC
7
A
O2
DC
7
11_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
A
DC
7
A
N4
DC
7
11_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
A
DC
6
A
N3
DC
6
11_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
A
DC
6
A
O2
DC
6
11_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
A
DC
6
A
N4
DC
6
11_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
A
DG
5
A
N1
DG
5
11_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
A
DG
5
A
O6
DG
5
11_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
A
DG
5
A
N2
DG
5
11_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
A
DG
4
A
N1
DG
4
11_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
A
DG
4
A
O6
DG
4
11_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
A
DG
4
A
N2
DG
4
11_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
A
DG
3
A
N1
DG
3
11_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
A
DG
3
A
O6
DG
3
11_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
A
DG
3
A
N2
DG
3
11_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
A
DC
2
A
N3
DC
2
11_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
A
DC
2
A
O2
DC
2
11_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
A
DC
2
A
N4
DC
2
11_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
10
1_555
A
DG
1
A
N1
DG
1
11_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
10
1_555
A
DG
1
A
O6
DG
1
11_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
10
1_555
A
DG
1
A
N2
DG
1
11_555
DNA
A-DNA, DOUBLE HELIX, DNA
138D
PDB
1
138D
1
10
138D
1
10
138D
A
1
1
10
178
P 61 2 2