1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wang, Y.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Structure
STRUE6
2005
0969-2126
1
263
282
10.1016/0969-2126(93)90015-9
8081740
Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex.
1993
10.2210/pdb143d/pdb
pdb_0000143d
DG A 3 HAS WRONG CHIRALITY AT ATOM C4'
DG A 3 HAS WRONG CHIRALITY AT ATOM C3'
DG A 10 HAS WRONG CHIRALITY AT ATOM C3'
DT A 11 HAS WRONG CHIRALITY AT ATOM C3'
DT A 11 HAS WRONG CHIRALITY AT ATOM C1'
DA A 13 HAS WRONG CHIRALITY AT ATOM C3'
DG A 2 HAS WRONG CHIRALITY AT ATOM C4'
DG A 4 HAS WRONG CHIRALITY AT ATOM C4'
DG A 10 HAS WRONG CHIRALITY AT ATOM C4'
DA A 1 HAS WRONG CHIRALITY AT ATOM C4'
DG A 21 HAS WRONG CHIRALITY AT ATOM C4'
DT A 5 HAS WRONG CHIRALITY AT ATOM C1'
DT A 6 HAS WRONG CHIRALITY AT ATOM C3'
DA A 13 HAS WRONG CHIRALITY AT ATOM C1'
DT A 17 HAS WRONG CHIRALITY AT ATOM C1'
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6983.497
DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')
1
syn
polymer
no
no
(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)
(DG)(DG)
AGGGTTAGGGTTAGGGTTAGGG
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
35.525
A
1
A
13
121.264
A_DA1:DA13_A
1
-8.947
-3.003
-0.197
-7.620
-8.966
3
6
A
10
A
22
-90.246
A_DG10:DG22_A
2
21.990
1.666
0.002
3.273
24.687
3
6
A
2
A
14
85.591
A_DG2:DG14_A
3
-9.244
-1.993
-0.484
-3.244
11.096
3
6
A
3
A
15
-92.763
A_DG3:DG15_A
4
-2.845
1.697
-0.081
3.257
35.959
1
20
A
6
A
19
-37.446
A_DT6:DA19_A
5
3.373
-1.789
-1.632
-0.043
1.672
3
6
A
16
A
20
93.138
A_DG16:DG20_A
6
-6.121
-1.898
0.049
-3.082
-11.990
3
6
A
9
A
21
86.781
A_DG9:DG21_A
7
-1.793
-1.654
0.127
-3.454
3.484
-111.543
A
A
1
10
-5.472
A
A
13
22
3.561
9.043
-1.526
0.723
AA_DA1DG10:DG22DA13_AA
1
-3.531
-2.136
-111.262
-0.552
-0.967
0.482
-177.380
A
A
10
2
-5.044
A
A
22
14
0.487
10.085
1.649
3.268
AA_DG10DG2:DG14DG22_AA
2
-6.754
-3.378
-177.365
-1.635
0.825
0.583
178.290
A
A
2
3
54.353
A
A
14
15
0.850
107.742
-2.516
-2.450
AA_DG2DG3:DG15DG14_AA
3
-142.047
71.658
8.115
-1.629
0.726
-2.285
156.504
A
A
6
16
8.575
A
A
19
20
-2.309
16.788
-1.364
0.486
AA_DT6DG16:DG20DA19_AA
4
-3.040
1.553
156.237
0.284
0.703
0.712
176.288
A
A
16
9
-84.375
A
A
20
21
-1.675
-167.615
-3.702
-2.752
AA_DG16DG9:DG21DG20_AA
5
-45.020
22.662
109.643
-1.524
1.892
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
database_PDB_caveat
ndb_struct_na_base_pair
ndb_struct_na_base_pair_step
pdbx_entity_src_syn
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
Advisory
Derived calculations
Source and taxonomy
1
0
1994-04-30
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
1
4
2023-03-29
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.organism_scientific
ENSEMBLE OF 6 STRUCTURES
Y
BNL
1993-10-08
REL
CHEMICALLY SYNTHESIZED
32630
synthetic construct
sample
all calculated structures submitted
6
6
A SET OF SIX STRUCTURES WERE OBTAINED USING METRIC MATRIX DISTANCE GEOMETRY, AND SUBSEQUENTLY REFINED BY DISTANCE-RESTRAINED MOLECULAR DYNAMICS USING A SET OF INTER-PROTON DISTANCES AND DIHEDRAL ANGLE RESTRAINTS DERIVED FROM THE NMR DATA. THE SIX DISTANCE-REFINED STRUCTURES WERE REFINED FURTHER USING RELAXATION-MATRIX BASED NOE INTENSITY-RESTRAINED MOLECULAR DYNAMICS. THE FINAL SIX STRUCTURES WERE OBTAINED BY TAKING THE AVERAGE COORDINATES OF THE LAST 2 PS OF THE DYNAMICS DURING RELAXATION MATRIX REFINEMENT AND MINIMIZED. THE R(1/6) VALUE WAS USED TO REFINE THE STRUCTURE DURING RELAXATION MATRIX REFINEMENT. THE R(1/6) FACTOR AND THE RMS DEVIATIONS FROM IDEAL GEOMETRY FOR THE SIX FINAL STRUCTURES ARE: MODEL1 MODEL2 MODEL3 MODEL4 MODEL5 MODEL6 R(1/6) FACTOR 0.021 0.016 0.022 0.026 0.024 0.027 BOND (ANG) 0.009 0.008 0.009 0.011 0.009 0.011 ANGLES (DEG) 2.949 3.085 3.286 3.853 3.038 3.157 IMPROPERS (DEG) 0.285 0.221 0.267 0.235 0.243 0.248
DISTANCE GEOMETRY, MOLECULAR DYNAMICS
BRUNGER
refinement
X-PLOR
A
1
n
1
DA
1
A
G
2
n
2
DG
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
T
5
n
5
DT
5
A
T
6
n
6
DT
6
A
A
7
n
7
DA
7
A
G
8
n
8
DG
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
T
11
n
11
DT
11
A
T
12
n
12
DT
12
A
A
13
n
13
DA
13
A
G
14
n
14
DG
14
A
G
15
n
15
DG
15
A
G
16
n
16
DG
16
A
T
17
n
17
DT
17
A
T
18
n
18
DT
18
A
A
19
n
19
DA
19
A
G
20
n
20
DG
20
A
G
21
n
21
DG
21
A
G
22
n
22
DG
22
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C4'
DG
3
WRONG HAND
1
A
C3'
DG
3
WRONG HAND
2
A
C3'
DG
3
PLANAR
2
A
C3'
DG
10
WRONG HAND
2
A
C3'
DT
11
WRONG HAND
2
A
C1'
DT
11
WRONG HAND
2
A
C3'
DA
13
WRONG HAND
3
A
C4'
DG
2
PLANAR
3
A
C4'
DG
4
PLANAR
3
A
C4'
DG
10
WRONG HAND
3
A
C3'
DG
10
WRONG HAND
4
A
C4'
DA
1
PLANAR
4
A
C4'
DG
4
PLANAR
4
A
C4'
DG
21
PLANAR
5
A
C1'
DT
5
WRONG HAND
5
A
C3'
DT
6
WRONG HAND
5
A
C3'
DG
10
WRONG HAND
5
A
C1'
DA
13
WRONG HAND
6
A
C4'
DG
10
WRONG HAND
6
A
C3'
DG
10
WRONG HAND
6
A
C1'
DT
17
WRONG HAND
1
A
A
H62
O2
DA
DT
7
18
1.43
3
A
A
H62
O2
DA
DT
7
18
1.47
5
A
A
H2''
O4'
DT
DT
17
18
1.55
6
A
A
O4
H62
DT
DA
11
13
1.53
1
3.49
0.30
108.30
111.79
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
1
3.69
0.60
106.00
109.69
A
A
A
O4'
C4'
C3'
DG
DG
DG
3
3
3
N
1
-21.07
1.90
109.30
88.23
A
A
A
C5'
C4'
O4'
DG
DG
DG
3
3
3
N
1
-24.01
2.50
109.40
85.39
A
A
A
C2'
C3'
O3'
DG
DG
DG
3
3
3
N
1
-5.16
0.70
102.20
97.04
A
A
A
C4'
C3'
C2'
DG
DG
DG
3
3
3
N
1
9.50
1.40
114.30
123.80
A
A
A
N9
C1'
C2'
DG
DG
DG
3
3
3
N
1
4.57
0.30
108.30
112.87
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
5.37
0.30
108.30
113.67
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
-5.79
0.60
122.90
117.11
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
1
-5.65
0.80
102.40
96.75
A
A
A
C3'
C2'
C1'
DT
DT
DT
6
6
6
N
1
-5.07
0.80
105.90
100.83
A
A
A
O4'
C1'
C2'
DT
DT
DT
6
6
6
N
1
-5.56
0.80
102.40
96.84
A
A
A
C3'
C2'
C1'
DA
DA
DA
7
7
7
N
1
6.43
0.30
108.30
114.73
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
8.47
1.20
119.70
128.17
A
A
A
C3'
O3'
P
DG
DG
DG
8
8
9
Y
1
-5.56
0.80
102.40
96.84
A
A
A
C3'
C2'
C1'
DG
DG
DG
9
9
9
N
1
-6.28
0.80
105.90
99.62
A
A
A
O4'
C1'
C2'
DG
DG
DG
9
9
9
N
1
4.70
0.30
108.30
113.00
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
1
-4.99
0.80
102.40
97.41
A
A
A
C3'
C2'
C1'
DG
DG
DG
16
16
16
N
1
5.66
0.30
108.30
113.96
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
-6.13
0.80
102.40
96.27
A
A
A
C3'
C2'
C1'
DT
DT
DT
17
17
17
N
1
3.55
0.30
108.30
111.85
A
A
A
O4'
C1'
N1
DT
DT
DT
17
17
17
N
1
-6.08
0.80
102.40
96.32
A
A
A
C3'
C2'
C1'
DG
DG
DG
20
20
20
N
1
9.20
1.20
119.70
128.90
A
A
A
C3'
O3'
P
DG
DG
DG
20
20
21
Y
1
-6.10
0.80
102.40
96.30
A
A
A
C3'
C2'
C1'
DG
DG
DG
21
21
21
N
1
3.04
0.30
108.30
111.34
A
A
A
O4'
C1'
N9
DG
DG
DG
21
21
21
N
2
9.92
1.20
119.70
129.62
A
A
A
C3'
O3'
P
DA
DA
DG
1
1
2
Y
2
-5.16
0.80
102.40
97.24
A
A
A
C3'
C2'
C1'
DG
DG
DG
2
2
2
N
2
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
2
-4.25
0.40
104.50
100.25
A
A
A
O4'
C4'
C3'
DG
DG
DG
3
3
3
N
2
18.57
2.00
112.30
130.87
A
A
A
C4'
C3'
O3'
DG
DG
DG
3
3
3
N
2
5.52
0.30
108.30
113.82
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
2.07
0.30
108.30
110.37
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
2
3.65
0.30
108.30
111.95
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
2
-5.52
0.70
102.20
96.68
A
A
A
C4'
C3'
C2'
DT
DT
DT
6
6
6
N
2
-5.82
0.80
102.40
96.58
A
A
A
C3'
C2'
C1'
DT
DT
DT
6
6
6
N
2
-6.08
0.80
105.90
99.82
A
A
A
O4'
C1'
C2'
DT
DT
DT
6
6
6
N
2
3.75
0.30
108.30
112.05
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
2
7.99
1.10
109.80
117.79
A
A
A
C5'
C4'
O4'
DA
DA
DA
7
7
7
N
2
-6.30
1.00
110.10
103.80
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
2
-5.75
0.80
102.40
96.65
A
A
A
C3'
C2'
C1'
DA
DA
DA
7
7
7
N
2
-5.87
0.80
105.90
100.03
A
A
A
O4'
C1'
C2'
DA
DA
DA
7
7
7
N
2
8.49
0.30
108.30
116.79
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
2
11.50
1.20
119.70
131.20
A
A
A
C3'
O3'
P
DG
DG
DG
9
9
10
Y
2
10.71
0.30
108.30
119.01
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
2
-5.86
0.70
102.20
96.34
A
A
A
C4'
C3'
C2'
DT
DT
DT
11
11
11
N
2
-6.06
0.80
102.40
96.34
A
A
A
C3'
C2'
C1'
DT
DT
DT
11
11
11
N
2
-3.66
0.60
122.90
119.24
A
A
A
C6
C5
C7
DT
DT
DT
11
11
11
N
2
5.20
0.30
108.30
113.50
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
2
-3.84
0.60
122.90
119.06
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
2
-3.51
0.40
104.50
100.99
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
2
-6.16
0.80
102.40
96.24
A
A
A
C3'
C2'
C1'
DG
DG
DG
14
14
14
N
2
2.90
0.30
108.30
111.20
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
2
-8.99
0.80
102.40
93.41
A
A
A
C3'
C2'
C1'
DG
DG
DG
20
20
20
N
2
7.67
1.20
119.70
127.37
A
A
A
C3'
O3'
P
DG
DG
DG
20
20
21
Y
2
-5.68
0.80
102.40
96.72
A
A
A
C3'
C2'
C1'
DG
DG
DG
21
21
21
N
2
-5.64
0.80
105.90
100.26
A
A
A
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
2
6.28
0.30
108.30
114.58
A
A
A
O4'
C1'
N9
DG
DG
DG
21
21
21
N
2
-6.37
0.80
102.40
96.03
A
A
A
C3'
C2'
C1'
DG
DG
DG
22
22
22
N
3
7.22
0.30
108.30
115.52
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
3
4.36
0.60
106.00
110.36
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
3
13.92
1.20
115.70
129.62
A
A
A
C5'
C4'
C3'
DG
DG
DG
2
2
2
N
3
9.38
1.10
109.80
119.18
A
A
A
C5'
C4'
O4'
DG
DG
DG
2
2
2
N
3
-9.61
0.70
102.20
92.59
A
A
A
C4'
C3'
C2'
DG
DG
DG
2
2
2
N
3
-4.50
0.70
108.00
103.50
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
3
4.92
0.60
106.00
110.92
A
A
A
O4'
C4'
C3'
DG
DG
DG
4
4
4
N
3
9.32
1.20
115.70
125.02
A
A
A
C5'
C4'
C3'
DG
DG
DG
4
4
4
N
3
14.00
1.10
109.80
123.80
A
A
A
C5'
C4'
O4'
DG
DG
DG
4
4
4
N
3
-6.97
1.00
110.10
103.13
A
A
A
C1'
O4'
C4'
DG
DG
DG
4
4
4
N
3
-7.28
0.70
102.20
94.92
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
3
6.22
0.30
108.30
114.52
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
3
-3.14
0.40
104.50
101.36
A
A
A
O4'
C4'
C3'
DT
DT
DT
5
5
5
N
3
-7.90
1.00
110.10
102.20
A
A
A
C1'
O4'
C4'
DT
DT
DT
5
5
5
N
3
4.74
0.30
108.30
113.04
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
3
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
3
-3.63
0.60
122.90
119.27
A
A
A
C6
C5
C7
DT
DT
DT
6
6
6
N
3
11.13
1.20
119.70
130.83
A
A
A
C3'
O3'
P
DT
DT
DA
6
6
7
Y
3
7.03
1.10
109.80
116.83
A
A
A
C5'
C4'
O4'
DA
DA
DA
7
7
7
N
3
-6.79
1.00
110.10
103.31
A
A
A
C1'
O4'
C4'
DA
DA
DA
7
7
7
N
3
-5.45
0.80
102.40
96.95
A
A
A
C3'
C2'
C1'
DA
DA
DA
7
7
7
N
3
-6.30
0.80
105.90
99.60
A
A
A
O4'
C1'
C2'
DA
DA
DA
7
7
7
N
3
10.72
0.30
108.30
119.02
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
3
9.29
1.20
119.70
128.99
A
A
A
C3'
O3'
P
DG
DG
DG
8
8
9
Y
3
-5.63
0.80
102.40
96.77
A
A
A
C3'
C2'
C1'
DG
DG
DG
9
9
9
N
3
5.38
0.30
108.30
113.68
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
3
-4.16
0.60
122.90
118.74
A
A
A
C6
C5
C7
DT
DT
DT
11
11
11
N
3
6.66
0.30
108.30
114.96
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
3
-5.31
0.80
102.40
97.09
A
A
A
C3'
C2'
C1'
DG
DG
DG
14
14
14
N
3
-4.98
0.80
105.90
100.92
A
A
A
O4'
C1'
C2'
DG
DG
DG
14
14
14
N
3
6.73
0.30
108.30
115.03
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
3
3.30
0.30
108.30
111.60
A
A
A
O4'
C1'
N1
DT
DT
DT
17
17
17
N
3
-3.65
0.60
122.90
119.25
A
A
A
C6
C5
C7
DT
DT
DT
17
17
17
N
3
-4.56
0.60
122.90
118.34
A
A
A
C6
C5
C7
DT
DT
DT
18
18
18
N
3
7.65
1.20
119.70
127.35
A
A
A
C3'
O3'
P
DA
DA
DG
19
19
20
Y
3
-6.50
0.80
102.40
95.90
A
A
A
C3'
C2'
C1'
DG
DG
DG
20
20
20
N
3
3.01
0.30
108.30
111.31
A
A
A
O4'
C1'
N9
DG
DG
DG
20
20
20
N
3
12.03
1.20
119.70
131.73
A
A
A
C3'
O3'
P
DG
DG
DG
20
20
21
Y
3
-5.29
0.80
102.40
97.11
A
A
A
C3'
C2'
C1'
DG
DG
DG
21
21
21
N
3
-5.43
0.80
102.40
96.97
A
A
A
C3'
C2'
C1'
DG
DG
DG
22
22
22
N
4
7.33
1.20
115.70
123.03
A
A
A
C5'
C4'
C3'
DA
DA
DA
1
1
1
N
4
17.74
1.10
109.80
127.54
A
A
A
C5'
C4'
O4'
DA
DA
DA
1
1
1
N
4
-6.72
0.70
102.20
95.48
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
4
12.94
1.20
115.70
128.64
A
A
A
C5'
C4'
C3'
DG
DG
DG
4
4
4
N
4
11.77
1.10
109.80
121.57
A
A
A
C5'
C4'
O4'
DG
DG
DG
4
4
4
N
4
-4.83
0.80
102.40
97.57
A
A
A
C3'
C2'
C1'
DG
DG
DG
4
4
4
N
4
-4.92
0.80
105.90
100.98
A
A
A
O4'
C1'
C2'
DT
DT
DT
5
5
5
N
4
3.54
0.30
108.30
111.84
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
4
-4.52
0.70
102.20
97.68
A
A
A
C4'
C3'
C2'
DT
DT
DT
6
6
6
N
4
-7.29
0.80
102.40
95.11
A
A
A
C3'
C2'
C1'
DT
DT
DT
6
6
6
N
4
-3.85
0.60
122.90
119.05
A
A
A
C6
C5
C7
DT
DT
DT
6
6
6
N
4
7.30
1.10
109.80
117.10
A
A
A
C5'
C4'
O4'
DA
DA
DA
7
7
7
N
4
-6.32
0.80
105.90
99.58
A
A
A
O4'
C1'
C2'
DA
DA
DA
7
7
7
N
4
7.94
0.30
108.30
116.24
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
4
-5.51
0.80
102.40
96.89
A
A
A
C3'
C2'
C1'
DG
DG
DG
9
9
9
N
4
-5.13
0.80
105.90
100.77
A
A
A
O4'
C1'
C2'
DG
DG
DG
9
9
9
N
4
-7.37
0.70
102.20
94.83
A
A
A
C4'
C3'
C2'
DG
DG
DG
10
10
10
N
4
5.63
0.30
108.30
113.93
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
4
-10.71
1.00
110.10
99.39
A
A
A
C1'
O4'
C4'
DT
DT
DT
11
11
11
N
4
-10.22
0.80
105.90
95.68
A
A
A
O4'
C1'
C2'
DT
DT
DT
12
12
12
N
4
9.14
1.40
114.30
123.44
A
A
A
N1
C1'
C2'
DT
DT
DT
12
12
12
N
4
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
4
-3.95
0.60
122.30
118.35
A
A
A
N3
C2
O2
DT
DT
DT
12
12
12
N
4
-3.94
0.60
122.90
118.96
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
4
6.61
1.10
109.80
116.41
A
A
A
C5'
C4'
O4'
DA
DA
DA
13
13
13
N
4
-5.17
0.80
102.40
97.23
A
A
A
C3'
C2'
C1'
DG
DG
DG
14
14
14
N
4
-5.15
0.70
102.20
97.05
A
A
A
C4'
C3'
C2'
DG
DG
DG
16
16
16
N
4
4.86
0.30
108.30
113.16
A
A
A
O4'
C1'
N1
DT
DT
DT
17
17
17
N
4
7.18
1.10
109.80
116.98
A
A
A
C5'
C4'
O4'
DT
DT
DT
18
18
18
N
4
8.12
0.30
108.30
116.42
A
A
A
O4'
C1'
N1
DT
DT
DT
18
18
18
N
4
-5.21
0.80
109.40
104.19
A
A
A
O5'
C5'
C4'
DA
DA
DA
19
19
19
N
4
4.82
0.30
108.30
113.12
A
A
A
O4'
C1'
N9
DA
DA
DA
19
19
19
N
4
-7.52
0.80
102.40
94.88
A
A
A
C3'
C2'
C1'
DG
DG
DG
20
20
20
N
4
10.70
1.20
115.70
126.40
A
A
A
C5'
C4'
C3'
DG
DG
DG
21
21
21
N
4
13.88
1.10
109.80
123.68
A
A
A
C5'
C4'
O4'
DG
DG
DG
21
21
21
N
4
-5.46
0.70
102.20
96.74
A
A
A
C4'
C3'
C2'
DG
DG
DG
21
21
21
N
4
-5.53
0.80
102.40
96.87
A
A
A
C3'
C2'
C1'
DG
DG
DG
21
21
21
N
4
-5.86
0.80
102.40
96.54
A
A
A
C3'
C2'
C1'
DG
DG
DG
22
22
22
N
5
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
5
8.92
1.20
119.70
128.62
A
A
A
C3'
O3'
P
DG
DG
DG
2
2
3
Y
5
-5.16
0.80
105.90
100.74
A
A
A
O4'
C1'
C2'
DG
DG
DG
4
4
4
N
5
4.47
0.30
108.30
112.77
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
5
-4.80
0.70
102.20
97.40
A
A
A
C4'
C3'
C2'
DT
DT
DT
5
5
5
N
5
-6.29
0.80
102.40
96.11
A
A
A
C3'
C2'
C1'
DT
DT
DT
5
5
5
N
5
-5.50
0.80
105.90
100.40
A
A
A
O4'
C1'
C2'
DT
DT
DT
5
5
5
N
5
8.59
0.30
108.30
116.89
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
5
-4.34
0.60
122.30
117.96
A
A
A
N3
C2
O2
DT
DT
DT
5
5
5
N
5
-3.62
0.60
122.90
119.28
A
A
A
C6
C5
C7
DT
DT
DT
5
5
5
N
5
-6.80
0.70
102.20
95.40
A
A
A
C4'
C3'
C2'
DT
DT
DT
6
6
6
N
5
6.25
0.30
108.30
114.55
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
5
12.18
1.20
119.70
131.88
A
A
A
C3'
O3'
P
DT
DT
DA
6
6
7
Y
5
-5.70
0.80
102.40
96.70
A
A
A
C3'
C2'
C1'
DA
DA
DA
7
7
7
N
5
7.06
0.30
108.30
115.36
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
5
-5.85
0.80
102.40
96.55
A
A
A
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
5
-4.82
0.80
105.90
101.08
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
5
3.20
0.30
108.30
111.50
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
5
-9.66
0.80
105.90
96.24
A
A
A
O4'
C1'
C2'
DG
DG
DG
9
9
9
N
5
9.85
1.20
119.70
129.55
A
A
A
C3'
O3'
P
DG
DG
DG
9
9
10
Y
5
3.85
0.30
108.30
112.15
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
5
7.60
1.20
119.70
127.30
A
A
A
C3'
O3'
P
DG
DG
DT
10
10
11
Y
5
-4.42
0.70
102.20
97.78
A
A
A
C4'
C3'
C2'
DT
DT
DT
11
11
11
N
5
-5.84
0.80
102.40
96.56
A
A
A
C3'
C2'
C1'
DT
DT
DT
11
11
11
N
5
-3.72
0.60
122.90
119.18
A
A
A
C6
C5
C7
DT
DT
DT
11
11
11
N
5
7.74
1.10
109.80
117.54
A
A
A
C5'
C4'
O4'
DT
DT
DT
12
12
12
N
5
-6.98
0.80
105.90
98.92
A
A
A
O4'
C1'
C2'
DT
DT
DT
12
12
12
N
5
6.44
0.30
108.30
114.74
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
5
-3.77
0.60
122.90
119.13
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
5
-4.29
0.40
104.50
100.21
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
5
12.21
1.60
120.90
133.11
A
A
A
P
O5'
C5'
DG
DG
DG
14
14
14
N
5
-4.83
0.80
102.40
97.57
A
A
A
C3'
C2'
C1'
DG
DG
DG
14
14
14
N
5
-6.43
0.80
105.90
99.47
A
A
A
O4'
C1'
C2'
DG
DG
DG
14
14
14
N
5
14.11
1.20
119.70
133.81
A
A
A
C3'
O3'
P
DG
DG
DG
14
14
15
Y
5
-4.39
0.70
102.20
97.81
A
A
A
C4'
C3'
C2'
DT
DT
DT
17
17
17
N
5
5.52
0.30
108.30
113.82
A
A
A
O4'
C1'
N1
DT
DT
DT
17
17
17
N
5
-3.96
0.60
122.90
118.94
A
A
A
C6
C5
C7
DT
DT
DT
17
17
17
N
5
14.25
1.20
119.70
133.95
A
A
A
C3'
O3'
P
DT
DT
DT
17
17
18
Y
5
-4.38
0.60
122.90
118.52
A
A
A
C6
C5
C7
DT
DT
DT
18
18
18
N
5
8.99
1.10
109.80
118.79
A
A
A
C5'
C4'
O4'
DA
DA
DA
19
19
19
N
5
-5.72
0.80
105.90
100.18
A
A
A
O4'
C1'
C2'
DA
DA
DA
19
19
19
N
5
-7.99
0.80
102.40
94.41
A
A
A
C3'
C2'
C1'
DG
DG
DG
20
20
20
N
5
-6.48
0.80
105.90
99.42
A
A
A
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
5
3.66
0.30
108.30
111.96
A
A
A
O4'
C1'
N9
DG
DG
DG
21
21
21
N
6
10.82
1.20
119.70
130.52
A
A
A
C3'
O3'
P
DG
DG
DG
3
3
4
Y
6
-4.95
0.80
102.40
97.45
A
A
A
C3'
C2'
C1'
DG
DG
DG
4
4
4
N
6
-7.78
1.20
119.70
111.92
A
A
A
C3'
O3'
P
DG
DG
DT
4
4
5
Y
6
-9.39
1.00
110.10
100.71
A
A
A
C1'
O4'
C4'
DT
DT
DT
5
5
5
N
6
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N1
DT
DT
DT
5
5
5
N
6
-7.78
0.80
102.40
94.62
A
A
A
C3'
C2'
C1'
DT
DT
DT
6
6
6
N
6
-6.90
0.80
105.90
99.00
A
A
A
O4'
C1'
C2'
DT
DT
DT
6
6
6
N
6
2.02
0.30
108.30
110.32
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
6
-4.86
0.80
102.40
97.54
A
A
A
C3'
C2'
C1'
DA
DA
DA
7
7
7
N
6
-5.93
0.80
105.90
99.97
A
A
A
O4'
C1'
C2'
DA
DA
DA
7
7
7
N
6
6.55
0.30
108.30
114.85
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
6
-5.61
0.80
105.90
100.29
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
6
9.98
1.20
119.70
129.68
A
A
A
C3'
O3'
P
DG
DG
DG
8
8
9
Y
6
-7.77
0.80
102.40
94.63
A
A
A
C3'
C2'
C1'
DG
DG
DG
9
9
9
N
6
-5.14
0.80
102.40
97.26
A
A
A
C3'
C2'
C1'
DT
DT
DT
11
11
11
N
6
8.55
0.30
108.30
116.85
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
6
3.50
0.30
108.30
111.80
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
6
-5.57
0.80
102.40
96.83
A
A
A
C3'
C2'
C1'
DG
DG
DG
14
14
14
N
6
-6.18
0.80
105.90
99.72
A
A
A
O4'
C1'
C2'
DG
DG
DG
14
14
14
N
6
9.72
1.20
119.70
129.42
A
A
A
C3'
O3'
P
DG
DG
DG
14
14
15
Y
6
-5.43
0.80
102.40
96.97
A
A
A
C3'
C2'
C1'
DG
DG
DG
15
15
15
N
6
4.36
0.30
108.30
112.66
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
6
-2.55
0.40
106.40
103.85
A
A
A
C8
N9
C4
DG
DG
DG
16
16
16
N
6
-6.28
0.70
102.20
95.92
A
A
A
C4'
C3'
C2'
DT
DT
DT
17
17
17
N
6
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N1
DT
DT
DT
17
17
17
N
6
7.47
1.20
115.70
123.17
A
A
A
C5'
C4'
C3'
DT
DT
DT
18
18
18
N
6
7.77
1.20
119.70
127.47
A
A
A
C3'
O3'
P
DT
DT
DA
18
18
19
Y
6
-2.53
0.40
105.80
103.27
A
A
A
C8
N9
C4
DA
DA
DA
19
19
19
N
6
-8.30
0.80
102.40
94.10
A
A
A
C3'
C2'
C1'
DG
DG
DG
20
20
20
N
6
-4.83
0.80
105.90
101.07
A
A
A
O4'
C1'
C2'
DG
DG
DG
20
20
20
N
6
4.74
0.30
108.30
113.04
A
A
A
O4'
C1'
N9
DG
DG
DG
20
20
20
N
6
-6.92
0.80
105.90
98.98
A
A
A
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
6
3.38
0.30
108.30
111.68
A
A
A
O4'
C1'
N9
DG
DG
DG
21
21
21
N
6
8.53
1.20
119.70
128.23
A
A
A
C3'
O3'
P
DG
DG
DG
21
21
22
Y
6
-8.86
0.80
102.40
93.54
A
A
A
C3'
C2'
C1'
DG
DG
DG
22
22
22
N
1
A
A
C3'
C2'
DT
DT
5
5
-0.049
0.008
1.516
1.467
N
1
A
A
C3'
C2'
DT
DT
6
6
0.086
0.012
1.518
1.604
N
1
A
A
C5
C7
DT
DT
6
6
0.050
0.006
1.496
1.546
N
1
A
A
C5'
C4'
DT
DT
11
11
0.042
0.007
1.512
1.554
N
1
A
A
C5
C7
DT
DT
12
12
0.038
0.006
1.496
1.534
N
1
A
A
C5'
C4'
DA
DA
19
19
0.048
0.007
1.512
1.560
N
2
A
A
C6
N1
DT
DT
5
5
-0.052
0.007
1.378
1.326
N
2
A
A
C5
C7
DT
DT
5
5
0.038
0.006
1.496
1.534
N
2
A
A
C5
C7
DT
DT
6
6
0.037
0.006
1.496
1.533
N
2
A
A
C5'
C4'
DA
DA
13
13
0.048
0.007
1.512
1.560
N
2
A
A
C5
C7
DT
DT
17
17
0.037
0.006
1.496
1.533
N
2
A
A
C5
C7
DT
DT
18
18
0.039
0.006
1.496
1.535
N
2
A
A
C5'
C4'
DA
DA
19
19
0.042
0.007
1.512
1.554
N
3
A
A
C5'
C4'
DA
DA
1
1
0.046
0.007
1.512
1.558
N
3
A
A
C6
N1
DT
DT
5
5
-0.053
0.007
1.378
1.325
N
3
A
A
C5
C7
DT
DT
5
5
0.041
0.006
1.496
1.537
N
3
A
A
C3'
C2'
DT
DT
6
6
0.086
0.012
1.518
1.604
N
3
A
A
C5
C7
DT
DT
6
6
0.036
0.006
1.496
1.532
N
3
A
A
C5
C7
DT
DT
12
12
0.042
0.006
1.496
1.538
N
3
A
A
C5
C7
DT
DT
17
17
0.036
0.006
1.496
1.532
N
4
A
A
C5
C7
DT
DT
5
5
0.036
0.006
1.496
1.532
N
4
A
A
C3'
C2'
DT
DT
6
6
0.093
0.012
1.518
1.611
N
4
A
A
C2'
C1'
DG
DG
9
9
0.064
0.010
1.519
1.583
N
4
A
A
C2'
C1'
DT
DT
12
12
0.088
0.010
1.519
1.607
N
4
A
A
C5'
C4'
DA
DA
13
13
0.051
0.007
1.512
1.563
N
4
A
A
C5
C7
DT
DT
18
18
0.037
0.006
1.496
1.533
N
4
A
A
C5'
C4'
DA
DA
19
19
0.048
0.007
1.512
1.560
N
5
A
A
C5
C7
DT
DT
5
5
0.037
0.006
1.496
1.533
N
5
A
A
C5
C7
DT
DT
6
6
0.048
0.006
1.496
1.544
N
5
A
A
C5
C7
DT
DT
11
11
0.038
0.006
1.496
1.534
N
5
A
A
C5
C7
DT
DT
12
12
0.037
0.006
1.496
1.533
N
5
A
A
C5'
C4'
DA
DA
19
19
0.043
0.007
1.512
1.555
N
6
A
A
C5'
C4'
DA
DA
1
1
0.043
0.007
1.512
1.555
N
6
A
A
C6
N1
DT
DT
5
5
-0.048
0.007
1.378
1.330
N
6
A
A
C3'
C2'
DT
DT
6
6
0.092
0.012
1.518
1.610
N
6
A
A
C5
C7
DT
DT
6
6
0.036
0.006
1.496
1.532
N
6
A
A
C2'
C1'
DG
DG
9
9
0.060
0.010
1.519
1.579
N
6
A
A
C2'
C1'
DT
DT
11
11
0.067
0.010
1.519
1.586
N
6
A
A
C5
C7
DT
DT
12
12
0.041
0.006
1.496
1.537
N
6
A
A
C5'
C4'
DA
DA
13
13
0.050
0.007
1.512
1.562
N
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX
1
N
N
hydrog
DA-DG MISPAIR
A
DA
1
A
N6
DA
1
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
DA-DA MISPAIR
A
DA
1
A
N6
DA
1
1_555
A
DA
13
A
N7
DA
13
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N1
DG
2
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N2
DG
2
1_555
A
DG
10
A
N7
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N7
DG
2
1_555
A
DG
14
A
N2
DG
14
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
O6
DG
2
1_555
A
DG
14
A
N1
DG
14
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N7
DG
3
1_555
A
DG
9
A
N2
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
O6
DG
3
1_555
A
DG
9
A
N1
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N1
DG
3
1_555
A
DG
15
A
O6
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N2
DG
3
1_555
A
DG
15
A
N7
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N1
DG
4
1_555
A
DG
8
A
O6
DG
8
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N2
DG
4
1_555
A
DG
8
A
N7
DG
8
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N7
DG
4
1_555
A
DG
16
A
N2
DG
16
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
O6
DG
4
1_555
A
DG
16
A
N1
DG
16
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
A
DA
19
A
N1
DA
19
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
A
DA
19
A
N6
DA
19
1_555
hydrog
TYPE_6_PAIR
A
DG
8
A
N1
DG
8
1_555
A
DG
20
A
O6
DG
20
1_555
hydrog
TYPE_6_PAIR
A
DG
8
A
N2
DG
8
1_555
A
DG
20
A
N7
DG
20
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N7
DG
9
1_555
A
DG
21
A
N2
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
O6
DG
9
1_555
A
DG
21
A
N1
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N1
DG
10
1_555
A
DG
22
A
O6
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N2
DG
10
1_555
A
DG
22
A
N7
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
14
A
N7
DG
14
1_555
A
DG
22
A
N2
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
14
A
O6
DG
14
1_555
A
DG
22
A
N1
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
15
A
N1
DG
15
1_555
A
DG
21
A
O6
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
15
A
N2
DG
15
1_555
A
DG
21
A
N7
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
16
A
N7
DG
16
1_555
A
DG
20
A
N2
DG
20
1_555
hydrog
TYPE_6_PAIR
A
DG
16
A
O6
DG
16
1_555
A
DG
20
A
N1
DG
20
1_555
DNA
DNA, HUMAN TELOMERIC SEQUENCE, AG3 REPEAT
143D
PDB
1
143D
1
22
143D
1
22
143D
A
1
1
22
1
P 1