1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Schultze, P.
Macaya, R.F.
Feigon, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
235
1532
1547
10.1006/jmbi.1994.1105
8107090
Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG).
1994
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
90
3745
Thrombin-Binding DNA Aptamer Forms a Unimolecular Quadruplex Structure in Solution
1993
10.2210/pdb148d/pdb
pdb_0000148d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4743.051
DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3')
1
syn
polymer
no
no
(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)
GGTTGGTGTGGTTGG
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-4.136
3
6
A
1
A
6
-90.486
A_DG1:DG6_A
1
-9.408
0.907
0.675
3.694
-19.346
6
A
15
A
10
84.235
A_DG15:DG10_A
2
-2.097
-2.330
1.017
-3.072
20.419
3
6
A
2
A
5
87.476
A_DG2:DG5_A
3
15.637
-1.136
-0.428
-3.642
-0.503
6
A
14
A
11
-96.472
A_DG14:DG11_A
4
0.862
1.084
-0.498
3.491
-3.981
2
13
A
4
A
13
175.946
A_DT4:DT13_A
5
-38.723
2.066
0.889
3.072
-1.459
176.556
A
A
1
15
-3.859
A
A
6
10
-1.466
-7.715
-0.888
-2.591
AA_DG1DG15:DG10DG6_AA
1
-9.137
4.571
176.537
-1.298
0.446
0.035
179.935
A
A
15
2
39.862
A
A
10
5
0.051
79.724
-1.119
-2.987
AA_DG15DG2:DG5DG10_AA
2
150.196
-75.098
179.255
-1.494
0.560
0.809
-179.895
A
A
2
14
2.071
A
A
5
11
0.809
-4.142
1.304
3.543
AA_DG2DG14:DG11DG5_AA
3
11.689
5.845
-179.894
-1.772
0.652
-0.596
172.706
A
A
14
4
84.340
A
A
11
13
1.308
162.604
-2.261
-0.001
AA_DG14DT4:DT13DG11_AA
4
58.038
-30.104
13.988
-0.298
1.239
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1994-04-30
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1993-11-15
REL
CHEMICALLY SYNTHESIZED
sample
target function
20
12
.0023
M
0.11M
6.1
K
STEP (1) SUBSTRUCTURE EMBEDDING ON 20 STRUCTURES STEP (2) TEMPLATE FITTING AND REGULARIZATION BY SIMULATED ANNEALING (20 STRUCTURES) STEP (3) SIMULATED ANNEALING AND ENERGY MINIMIZATION (20 STRUCTURES) STEP (4) RELAXATION MATRIX REFINEMENT ON THE BEST 6 OF 20 STRUCTURES THIS PROCEDURE WAS CARRIED OUT SEPARATELY WITH DISTANCE RESTRAINTS ENFORCING HYDROGEN BONDING BETWEEN T4 AND T13 INVOLVING O2 ATOMS IN ONE CASE (MODELS 1-6) AND O4 ATOMS IN THE OTHER (MODELS 7-12). ALL MODELS WERE SUPERIMPOSED ON MODEL 1, USING ALL NON-HYDROGEN ATOMS OF G1, G2, G5, G6, G10, G11, G14, G15; I.E., ALL G RESIDUES PARTICIPATING IN TETRAD FORMATION.
SIMULATED ANNEALING, MATRIX RELAXATION
1
closest to the average
H2O/D2O
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
T
4
n
4
DT
4
A
G
5
n
5
DG
5
A
G
6
n
6
DG
6
A
T
7
n
7
DT
7
A
G
8
n
8
DG
8
A
T
9
n
9
DT
9
A
G
10
n
10
DG
10
A
G
11
n
11
DG
11
A
T
12
n
12
DT
12
A
T
13
n
13
DT
13
A
G
14
n
14
DG
14
A
G
15
n
15
DG
15
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
6
A
C4'
DG
8
PLANAR
1
6.72
0.30
108.30
115.02
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
3.33
0.50
113.10
116.43
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
1
7.58
1.20
119.70
127.28
A
A
A
C3'
O3'
P
DG
DG
DT
2
2
3
Y
1
4.77
0.30
108.30
113.07
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
-4.32
0.60
122.90
118.58
A
A
A
C6
C5
C7
DT
DT
DT
3
3
3
N
1
6.78
1.10
109.80
116.58
A
A
A
C5'
C4'
O4'
DT
DT
DT
4
4
4
N
1
-6.25
0.80
105.90
99.65
A
A
A
O4'
C1'
C2'
DT
DT
DT
4
4
4
N
1
-5.22
0.80
102.40
97.18
A
A
A
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
1
3.25
0.50
113.10
116.35
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
1
-6.46
0.70
102.20
95.74
A
A
A
C4'
C3'
C2'
DG
DG
DG
6
6
6
N
1
-7.27
0.80
105.90
98.63
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
1
2.62
0.30
108.30
110.92
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
3.53
0.50
113.10
116.63
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
1
-16.71
1.90
104.00
87.29
A
A
A
O3'
P
O5'
DG
DT
DT
6
7
7
Y
1
4.18
0.60
106.00
110.18
A
A
A
O4'
C4'
C3'
DT
DT
DT
7
7
7
N
1
-4.97
0.70
102.20
97.23
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
1
12.85
1.10
109.80
122.65
A
A
A
C5'
C4'
O4'
DG
DG
DG
8
8
8
N
1
-4.94
0.70
102.20
97.26
A
A
A
C4'
C3'
C2'
DG
DG
DG
8
8
8
N
1
7.57
1.20
102.50
110.07
A
A
A
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
1
-6.84
0.80
105.90
99.06
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
1
-12.92
1.90
112.60
99.68
A
A
A
N9
C1'
C2'
DG
DG
DG
8
8
8
N
1
-4.83
0.70
108.00
103.17
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
-3.40
0.50
104.30
100.90
A
A
A
C5
N7
C8
DG
DG
DG
8
8
8
N
1
4.56
0.50
113.10
117.66
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
1
9.70
1.60
120.90
130.60
A
A
A
P
O5'
C5'
DT
DT
DT
9
9
9
N
1
-4.16
0.40
104.50
100.34
A
A
A
O4'
C4'
C3'
DT
DT
DT
9
9
9
N
1
4.59
0.70
110.30
114.89
A
A
A
C1'
O4'
C4'
DT
DT
DT
9
9
9
N
1
2.26
0.30
108.30
110.56
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
-4.33
0.60
122.90
118.57
A
A
A
C6
C5
C7
DT
DT
DT
9
9
9
N
1
-3.25
0.50
104.30
101.05
A
A
A
C5
N7
C8
DG
DG
DG
11
11
11
N
1
3.56
0.50
113.10
116.66
A
A
A
N7
C8
N9
DG
DG
DG
11
11
11
N
1
6.99
0.30
108.30
115.29
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
1
5.48
0.30
108.30
113.78
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
1
4.19
0.30
108.30
112.49
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
1
3.18
0.50
113.10
116.28
A
A
A
N7
C8
N9
DG
DG
DG
15
15
15
N
1
-2.42
0.40
106.40
103.98
A
A
A
C8
N9
C4
DG
DG
DG
15
15
15
N
2
3.50
0.30
108.30
111.80
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
2
3.49
0.50
113.10
116.59
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
2
3.35
0.50
113.10
116.45
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
2
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
2
-3.67
0.60
122.90
119.23
A
A
A
C6
C5
C7
DT
DT
DT
3
3
3
N
2
10.28
1.10
109.80
120.08
A
A
A
C5'
C4'
O4'
DT
DT
DT
4
4
4
N
2
-7.09
0.80
105.90
98.81
A
A
A
O4'
C1'
C2'
DT
DT
DT
4
4
4
N
2
-3.46
0.40
104.50
101.04
A
A
A
O4'
C4'
C3'
DG
DG
DG
5
5
5
N
2
7.43
1.20
115.70
123.13
A
A
A
C5'
C4'
C3'
DG
DG
DG
5
5
5
N
2
-5.28
0.70
108.00
102.72
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
2
3.61
0.50
113.10
116.71
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
2
7.68
1.10
109.80
117.48
A
A
A
C5'
C4'
O4'
DG
DG
DG
6
6
6
N
2
-5.89
0.80
105.90
100.01
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
2
6.23
0.30
108.30
114.53
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
2
3.99
0.50
113.10
117.09
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
2
-16.17
1.90
104.00
87.83
A
A
A
O3'
P
O5'
DG
DT
DT
6
7
7
Y
2
3.87
0.60
106.00
109.87
A
A
A
O4'
C4'
C3'
DT
DT
DT
7
7
7
N
2
-5.84
0.70
102.20
96.36
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
2
4.49
0.60
106.00
110.49
A
A
A
O4'
C4'
C3'
DG
DG
DG
8
8
8
N
2
14.71
1.10
109.80
124.51
A
A
A
C5'
C4'
O4'
DG
DG
DG
8
8
8
N
2
-6.43
0.70
102.20
95.77
A
A
A
C4'
C3'
C2'
DG
DG
DG
8
8
8
N
2
10.37
1.20
102.50
112.87
A
A
A
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
2
-8.97
0.80
105.90
96.93
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
2
-11.80
1.90
112.60
100.80
A
A
A
N9
C1'
C2'
DG
DG
DG
8
8
8
N
2
3.62
0.50
113.10
116.72
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
2
-5.07
0.40
104.50
99.43
A
A
A
O4'
C4'
C3'
DT
DT
DT
9
9
9
N
2
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
2
-4.57
0.60
122.90
118.33
A
A
A
C6
C5
C7
DT
DT
DT
9
9
9
N
2
2.29
0.30
108.30
110.59
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
2
9.09
0.30
108.30
117.39
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
2
3.48
0.30
108.30
111.78
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
2
-4.35
0.60
122.90
118.55
A
A
A
C6
C5
C7
DT
DT
DT
13
13
13
N
2
3.32
0.30
108.30
111.62
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
3
4.20
0.30
108.30
112.50
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
3
3.38
0.50
113.10
116.48
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
3
3.40
0.50
113.10
116.50
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
3
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
3
-3.98
0.60
122.90
118.92
A
A
A
C6
C5
C7
DT
DT
DT
3
3
3
N
3
8.09
1.10
109.80
117.89
A
A
A
C5'
C4'
O4'
DT
DT
DT
4
4
4
N
3
-6.34
0.80
105.90
99.56
A
A
A
O4'
C1'
C2'
DT
DT
DT
4
4
4
N
3
3.12
0.50
113.10
116.22
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
3
8.43
1.20
119.70
128.13
A
A
A
C3'
O3'
P
DG
DG
DG
5
5
6
Y
3
4.28
0.60
106.00
110.28
A
A
A
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
3
-5.38
0.70
102.20
96.82
A
A
A
C4'
C3'
C2'
DG
DG
DG
6
6
6
N
3
-6.24
0.80
105.90
99.66
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
3
7.55
0.30
108.30
115.85
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
3
4.16
0.50
113.10
117.26
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
3
-12.80
1.90
104.00
91.20
A
A
A
O3'
P
O5'
DG
DT
DT
6
7
7
Y
3
4.40
0.60
106.00
110.40
A
A
A
O4'
C4'
C3'
DT
DT
DT
7
7
7
N
3
-5.37
0.70
102.20
96.83
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
3
4.52
0.60
106.00
110.52
A
A
A
O4'
C4'
C3'
DG
DG
DG
8
8
8
N
3
14.69
1.10
109.80
124.49
A
A
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C5'
C4'
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DG
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8
8
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3
-5.08
0.70
102.20
97.12
A
A
A
C4'
C3'
C2'
DG
DG
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8
8
8
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3
8.88
1.20
102.50
111.38
A
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C3'
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8
8
8
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3
-7.19
0.80
105.90
98.71
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8
8
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-11.56
1.90
112.60
101.04
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8
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-4.55
0.70
108.00
103.45
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8
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-3.11
0.50
104.30
101.19
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8
8
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3
4.46
0.50
113.10
117.56
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8
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-4.14
0.40
104.50
100.36
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O4'
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DT
DT
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9
9
9
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3
4.72
0.70
110.30
115.02
A
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DT
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9
9
9
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3
-5.04
0.80
105.90
100.86
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9
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1.83
0.30
108.30
110.13
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9
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7.48
0.30
108.30
115.78
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DT
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12
12
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3
7.12
0.30
108.30
115.42
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DT
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13
13
13
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3
-3.70
0.60
122.90
119.20
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DT
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13
13
13
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3
3.03
0.50
113.10
116.13
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DG
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14
14
14
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3
3.55
0.30
108.30
111.85
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15
15
15
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2.61
0.30
108.30
110.91
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1
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3.53
0.50
113.10
116.63
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3.44
0.50
113.10
116.54
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2
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7.67
1.20
119.70
127.37
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2
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4
2.50
0.30
108.30
110.80
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3
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9.36
1.10
109.80
119.16
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DT
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4
4
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-7.15
0.80
105.90
98.75
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7.46
1.20
119.70
127.16
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4
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-2.53
0.40
104.50
101.97
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5
5
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3.82
0.50
113.10
116.92
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5
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9.74
1.10
109.80
119.54
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6
6
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-5.64
0.80
105.90
100.26
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6
6
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5.62
0.30
108.30
113.92
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6
6
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3.84
0.50
113.10
116.94
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6
6
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-14.41
1.90
104.00
89.59
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DT
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6
7
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4
4.09
0.60
106.00
110.09
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7
7
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-5.98
0.70
102.20
96.22
A
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C4'
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DT
DT
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7
7
7
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4
3.90
0.60
106.00
109.90
A
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8
8
8
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13.81
1.10
109.80
123.61
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8
8
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-6.89
0.70
102.20
95.31
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8
8
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10.04
1.20
102.50
112.54
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8
8
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-8.94
0.80
105.90
96.96
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8
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-11.67
1.90
112.60
100.93
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8
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4.18
0.50
113.10
117.28
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8
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-5.19
0.40
104.50
99.31
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9
9
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3.34
0.30
108.30
111.64
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9
9
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-4.48
0.60
122.90
118.43
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9
9
9
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4
3.01
0.50
113.10
116.11
A
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10
10
10
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-4.49
0.70
102.20
97.71
A
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12
12
12
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7.80
0.30
108.30
116.10
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12
12
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6.08
0.30
108.30
114.38
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13
13
13
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-3.84
0.60
122.90
119.06
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13
13
13
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3.04
0.50
113.10
116.14
A
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14
14
14
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4
4.48
0.30
108.30
112.78
A
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15
15
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7.45
0.30
108.30
115.75
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1
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3.49
0.50
113.10
116.59
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1
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3.05
0.50
113.10
116.15
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2
2
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-5.59
0.80
102.40
96.81
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5
5
5
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3.94
0.50
113.10
117.04
A
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5
5
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5
7.25
1.20
119.70
126.95
A
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5
-5.00
0.70
102.20
97.20
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6
6
6
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5
-9.00
0.80
105.90
96.90
A
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DG
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6
6
6
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5
-3.28
0.50
104.30
101.02
A
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6
6
6
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5
4.07
0.50
113.10
117.17
A
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6
6
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5
-14.12
1.90
104.00
89.88
A
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DT
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6
7
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5
-5.23
0.70
108.00
102.77
A
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DT
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7
7
7
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4.68
0.60
106.00
110.68
A
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O4'
C4'
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DG
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8
8
8
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11.55
1.20
115.70
127.25
A
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8
8
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9.92
1.10
109.80
119.72
A
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8
8
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5
8.74
1.20
102.50
111.24
A
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8
8
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5
-5.76
0.80
105.90
100.14
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8
8
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-6.92
0.70
108.00
101.08
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8
8
8
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5
3.86
0.50
113.10
116.96
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8
8
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2.16
0.30
108.30
110.46
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9
9
9
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-3.91
0.60
122.90
118.99
A
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9
9
9
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5
2.50
0.30
108.30
110.80
A
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DG
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10
10
10
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5.79
0.30
108.30
114.09
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12
12
12
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5.58
0.30
108.30
113.88
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13
13
13
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2.49
0.30
108.30
110.79
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14
14
14
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3.38
0.30
108.30
111.68
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15
15
15
N
5
3.12
0.50
113.10
116.22
A
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15
15
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6
6.15
0.30
108.30
114.45
A
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1
1
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3.45
0.50
113.10
116.55
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1
1
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6
3.04
0.50
113.10
116.14
A
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2
2
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6
4.45
0.30
108.30
112.75
A
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3
3
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9.33
1.10
109.80
119.13
A
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4
4
4
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6
-6.05
0.80
105.90
99.85
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4
4
4
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6
7.85
1.20
115.70
123.55
A
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C5'
C4'
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5
5
5
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6
3.36
0.50
113.10
116.46
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5
5
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6
4.68
0.60
106.00
110.68
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6
6
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6
-5.66
0.70
102.20
96.54
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6
6
6
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6
-4.94
0.80
105.90
100.96
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6
6
6
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6
4.34
0.50
113.10
117.44
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6
6
6
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6
4.52
0.60
106.00
110.52
A
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DT
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7
7
7
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6
-5.69
0.70
102.20
96.51
A
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C3'
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DT
DT
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7
7
7
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6
6.66
0.60
106.00
112.66
A
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C4'
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8
8
8
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6
11.69
1.20
115.70
127.39
A
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C4'
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8
8
8
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6
9.15
1.10
109.80
118.95
A
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8
8
8
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6
-5.70
0.70
102.20
96.50
A
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8
8
8
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6
8.85
1.20
102.50
111.35
A
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8
8
8
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6
-4.86
0.80
105.90
101.04
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8
8
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-13.17
1.90
112.60
99.43
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8
8
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6
-5.07
0.70
108.00
102.93
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8
8
8
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6
3.84
0.50
113.10
116.94
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8
8
8
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6
-5.61
0.80
109.40
103.79
A
A
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O5'
C5'
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DT
DT
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9
9
9
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6
10.55
1.60
120.90
131.45
A
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9
9
9
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6
7.23
1.20
115.70
122.93
A
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C4'
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DT
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9
9
9
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6
3.06
0.30
108.30
111.36
A
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DT
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9
9
9
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6
3.83
0.60
119.00
122.83
A
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DT
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9
9
9
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6
-6.11
0.60
122.90
116.79
A
A
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C5
C7
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DT
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9
9
9
N
6
7.29
0.30
108.30
115.59
A
A
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O4'
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DT
DT
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12
12
12
N
6
5.09
0.30
108.30
113.39
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DT
DT
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13
13
13
N
6
-3.91
0.60
122.90
118.99
A
A
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C5
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DT
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13
13
13
N
6
2.08
0.30
108.30
110.38
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DG
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14
14
14
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3.05
0.50
113.10
116.15
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14
14
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6
4.05
0.30
108.30
112.35
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15
15
15
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7
5.71
0.30
108.30
114.01
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1
1
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3.41
0.50
113.10
116.51
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1
1
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7
3.42
0.50
113.10
116.52
A
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2
2
2
N
7
-3.72
0.60
122.90
119.18
A
A
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C6
C5
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DT
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3
3
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7
8.06
1.10
109.80
117.86
A
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C5'
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DT
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4
4
4
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7
-5.55
0.80
105.90
100.35
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DT
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4
4
4
N
7
3.69
0.50
113.10
116.79
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5
5
5
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7
3.80
0.60
106.00
109.80
A
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6
6
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7
-4.85
0.70
102.20
97.35
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C3'
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6
6
6
N
7
2.06
0.30
108.30
110.36
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
7
4.35
0.50
113.10
117.45
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
7
-11.93
1.90
104.00
92.07
A
A
A
O3'
P
O5'
DG
DT
DT
6
7
7
Y
7
-4.45
0.70
102.20
97.75
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
7
13.11
1.10
109.80
122.91
A
A
A
C5'
C4'
O4'
DG
DG
DG
8
8
8
N
7
-6.39
0.70
102.20
95.81
A
A
A
C4'
C3'
C2'
DG
DG
DG
8
8
8
N
7
8.03
1.20
102.50
110.53
A
A
A
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
7
-7.64
0.80
105.90
98.26
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
7
3.60
0.50
113.10
116.70
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
7
-5.35
0.80
109.40
104.05
A
A
A
O5'
C5'
C4'
DT
DT
DT
9
9
9
N
7
-4.18
0.40
104.50
100.32
A
A
A
O4'
C4'
C3'
DT
DT
DT
9
9
9
N
7
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
7
7.63
1.20
115.70
123.33
A
A
A
C5'
C4'
C3'
DG
DG
DG
10
10
10
N
7
-5.22
0.80
102.40
97.18
A
A
A
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
7
3.20
0.50
113.10
116.30
A
A
A
N7
C8
N9
DG
DG
DG
10
10
10
N
7
8.99
0.30
108.30
117.29
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
7
2.28
0.30
108.30
110.58
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
7
-3.91
0.60
122.90
118.99
A
A
A
C6
C5
C7
DT
DT
DT
13
13
13
N
7
3.01
0.50
113.10
116.11
A
A
A
N7
C8
N9
DG
DG
DG
14
14
14
N
7
5.93
0.30
108.30
114.23
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
8
6.57
0.30
108.30
114.87
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
8
3.61
0.50
113.10
116.71
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
8
5.45
0.30
108.30
113.75
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
8
-4.29
0.60
122.90
118.61
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
8
-3.31
0.50
104.30
100.99
A
A
A
C5
N7
C8
DG
DG
DG
5
5
5
N
8
4.25
0.50
113.10
117.35
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
8
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
8
3.69
0.50
113.10
116.79
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
8
4.66
0.60
106.00
110.66
A
A
A
O4'
C4'
C3'
DT
DT
DT
7
7
7
N
8
-6.63
0.70
102.20
95.57
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
8
-5.10
0.70
108.00
102.90
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
8
6.15
0.60
106.00
112.15
A
A
A
O4'
C4'
C3'
DG
DG
DG
8
8
8
N
8
8.58
1.20
115.70
124.28
A
A
A
C5'
C4'
C3'
DG
DG
DG
8
8
8
N
8
11.77
1.10
109.80
121.57
A
A
A
C5'
C4'
O4'
DG
DG
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8
8
8
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8
-7.75
0.70
102.20
94.45
A
A
A
C4'
C3'
C2'
DG
DG
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8
8
8
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8
11.14
1.20
102.50
113.64
A
A
A
C3'
C2'
C1'
DG
DG
DG
8
8
8
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8
-7.84
0.80
105.90
98.06
A
A
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O4'
C1'
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DG
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8
8
8
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8
-12.79
1.90
112.60
99.81
A
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N9
C1'
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DG
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8
8
8
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8
-5.47
0.70
108.00
102.53
A
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N9
DG
DG
DG
8
8
8
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8
4.81
0.50
113.10
117.91
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
8
-3.16
0.40
106.40
103.24
A
A
A
C8
N9
C4
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DG
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8
8
8
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8
-3.69
0.40
104.50
100.81
A
A
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O4'
C4'
C3'
DT
DT
DT
9
9
9
N
8
2.88
0.30
108.30
111.18
A
A
A
O4'
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N1
DT
DT
DT
9
9
9
N
8
-4.10
0.60
122.90
118.80
A
A
A
C6
C5
C7
DT
DT
DT
9
9
9
N
8
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
8
3.27
0.50
113.10
116.37
A
A
A
N7
C8
N9
DG
DG
DG
11
11
11
N
8
8.80
1.20
119.70
128.50
A
A
A
C3'
O3'
P
DG
DG
DT
11
11
12
Y
8
6.73
0.30
108.30
115.03
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
8
5.63
0.30
108.30
113.93
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
8
-4.11
0.60
122.90
118.79
A
A
A
C6
C5
C7
DT
DT
DT
13
13
13
N
8
4.47
0.30
108.30
112.77
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
8
3.22
0.50
113.10
116.32
A
A
A
N7
C8
N9
DG
DG
DG
14
14
14
N
8
3.86
0.30
108.30
112.16
A
A
A
O4'
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N9
DG
DG
DG
15
15
15
N
8
3.00
0.50
113.10
116.10
A
A
A
N7
C8
N9
DG
DG
DG
15
15
15
N
9
3.78
0.30
108.30
112.08
A
A
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O4'
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N9
DG
DG
DG
1
1
1
N
9
3.76
0.50
113.10
116.86
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
9
3.12
0.50
113.10
116.22
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
9
5.42
0.30
108.30
113.72
A
A
A
O4'
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N1
DT
DT
DT
3
3
3
N
9
-4.08
0.60
122.90
118.82
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
9
-4.32
0.70
108.00
103.68
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
9
-3.44
0.50
104.30
100.86
A
A
A
C5
N7
C8
DG
DG
DG
5
5
5
N
9
4.52
0.50
113.10
117.62
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
9
-5.15
0.80
109.40
104.25
A
A
A
O5'
C5'
C4'
DG
DG
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6
6
6
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9
8.03
1.10
109.80
117.83
A
A
A
C5'
C4'
O4'
DG
DG
DG
6
6
6
N
9
5.74
0.30
108.30
114.04
A
A
A
O4'
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N9
DG
DG
DG
6
6
6
N
9
5.16
0.50
113.10
118.26
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
9
-3.14
0.40
106.40
103.26
A
A
A
C8
N9
C4
DG
DG
DG
6
6
6
N
9
9.13
1.20
119.70
128.83
A
A
A
C3'
O3'
P
DG
DG
DT
6
6
7
Y
9
4.87
0.60
106.00
110.87
A
A
A
O4'
C4'
C3'
DT
DT
DT
7
7
7
N
9
-5.98
0.70
102.20
96.22
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
9
-5.63
0.80
109.40
103.77
A
A
A
O5'
C5'
C4'
DG
DG
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8
8
8
N
9
17.43
1.10
109.80
127.23
A
A
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C5'
C4'
O4'
DG
DG
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8
8
8
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9
-5.13
0.70
102.20
97.07
A
A
A
C4'
C3'
C2'
DG
DG
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8
8
8
N
9
7.45
1.20
102.50
109.95
A
A
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C3'
C2'
C1'
DG
DG
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8
8
8
N
9
-5.71
0.80
105.90
100.19
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
9
4.26
0.50
113.10
117.36
A
A
A
N7
C8
N9
DG
DG
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8
8
8
N
9
-5.31
0.40
104.50
99.19
A
A
A
O4'
C4'
C3'
DT
DT
DT
9
9
9
N
9
7.48
1.10
109.80
117.28
A
A
A
C5'
C4'
O4'
DT
DT
DT
9
9
9
N
9
1.98
0.30
108.30
110.28
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
9
3.12
0.50
113.10
116.22
A
A
A
N7
C8
N9
DG
DG
DG
10
10
10
N
9
3.88
0.60
106.00
109.88
A
A
A
O4'
C4'
C3'
DG
DG
DG
11
11
11
N
9
-4.23
0.70
102.20
97.97
A
A
A
C4'
C3'
C2'
DT
DT
DT
12
12
12
N
9
7.85
0.30
108.30
116.15
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
9
2.50
0.30
108.30
110.80
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
9
-4.31
0.60
122.90
118.59
A
A
A
C6
C5
C7
DT
DT
DT
13
13
13
N
9
4.30
0.30
108.30
112.60
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
9
3.08
0.50
113.10
116.18
A
A
A
N7
C8
N9
DG
DG
DG
14
14
14
N
9
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
10
6.34
0.30
108.30
114.64
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
10
3.23
0.50
113.10
116.33
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
10
3.64
0.60
106.00
109.64
A
A
A
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
10
3.08
0.50
113.10
116.18
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
10
8.69
1.20
119.70
128.39
A
A
A
C3'
O3'
P
DG
DG
DT
2
2
3
Y
10
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
10
8.20
1.10
109.80
118.00
A
A
A
C5'
C4'
O4'
DT
DT
DT
4
4
4
N
10
-5.22
0.80
105.90
100.68
A
A
A
O4'
C1'
C2'
DT
DT
DT
4
4
4
N
10
-3.63
0.60
122.90
119.27
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
10
8.16
1.20
115.70
123.86
A
A
A
C5'
C4'
C3'
DG
DG
DG
5
5
5
N
10
3.36
0.50
113.10
116.46
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
10
3.71
0.60
106.00
109.71
A
A
A
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
10
11.21
1.10
109.80
121.01
A
A
A
C5'
C4'
O4'
DG
DG
DG
6
6
6
N
10
-5.11
0.80
105.90
100.79
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
10
4.82
0.30
108.30
113.12
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
10
4.92
0.50
113.10
118.02
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
10
-2.49
0.40
106.40
103.91
A
A
A
C8
N9
C4
DG
DG
DG
6
6
6
N
10
-12.87
1.90
104.00
91.13
A
A
A
O3'
P
O5'
DG
DT
DT
6
7
7
Y
10
3.65
0.60
106.00
109.65
A
A
A
O4'
C4'
C3'
DT
DT
DT
7
7
7
N
10
-6.15
0.70
102.20
96.05
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
10
4.20
0.60
106.00
110.20
A
A
A
O4'
C4'
C3'
DG
DG
DG
8
8
8
N
10
13.27
1.10
109.80
123.07
A
A
A
C5'
C4'
O4'
DG
DG
DG
8
8
8
N
10
-6.80
0.70
102.20
95.40
A
A
A
C4'
C3'
C2'
DG
DG
DG
8
8
8
N
10
9.42
1.20
102.50
111.92
A
A
A
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
10
-7.91
0.80
105.90
97.99
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
10
-12.20
1.90
112.60
100.40
A
A
A
N9
C1'
C2'
DG
DG
DG
8
8
8
N
10
3.47
0.50
113.10
116.57
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
10
-6.90
0.80
109.40
102.50
A
A
A
O5'
C5'
C4'
DT
DT
DT
9
9
9
N
10
10.51
1.60
120.90
131.41
A
A
A
P
O5'
C5'
DT
DT
DT
9
9
9
N
10
-2.75
0.40
104.50
101.75
A
A
A
O4'
C4'
C3'
DT
DT
DT
9
9
9
N
10
2.67
0.30
108.30
110.97
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
10
-4.88
0.60
122.90
118.02
A
A
A
C6
C5
C7
DT
DT
DT
9
9
9
N
10
3.09
0.50
113.10
116.19
A
A
A
N7
C8
N9
DG
DG
DG
11
11
11
N
10
-4.47
0.70
102.20
97.73
A
A
A
C4'
C3'
C2'
DT
DT
DT
12
12
12
N
10
8.11
0.30
108.30
116.41
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
10
5.51
0.30
108.30
113.81
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
10
-3.82
0.60
122.90
119.08
A
A
A
C6
C5
C7
DT
DT
DT
13
13
13
N
10
4.28
0.30
108.30
112.58
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
10
3.01
0.50
113.10
116.11
A
A
A
N7
C8
N9
DG
DG
DG
14
14
14
N
10
5.24
0.30
108.30
113.54
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
11
3.53
0.30
108.30
111.83
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
11
3.64
0.50
113.10
116.74
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
11
3.06
0.50
113.10
116.16
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
11
8.29
1.20
119.70
127.99
A
A
A
C3'
O3'
P
DG
DG
DT
2
2
3
Y
11
5.14
0.30
108.30
113.44
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
11
6.74
1.10
109.80
116.54
A
A
A
C5'
C4'
O4'
DT
DT
DT
4
4
4
N
11
2.47
0.30
108.30
110.77
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
11
3.66
0.50
113.10
116.76
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
11
4.81
0.60
106.00
110.81
A
A
A
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
11
-16.22
1.90
104.00
87.78
A
A
A
O3'
P
O5'
DG
DT
DT
6
7
7
Y
11
5.10
0.60
106.00
111.10
A
A
A
O4'
C4'
C3'
DT
DT
DT
7
7
7
N
11
-5.24
0.70
102.20
96.96
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
11
13.19
1.10
109.80
122.99
A
A
A
C5'
C4'
O4'
DG
DG
DG
8
8
8
N
11
-6.59
0.70
102.20
95.61
A
A
A
C4'
C3'
C2'
DG
DG
DG
8
8
8
N
11
8.50
1.20
102.50
111.00
A
A
A
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
11
-7.57
0.80
105.90
98.33
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
11
-5.08
0.40
104.50
99.42
A
A
A
O4'
C4'
C3'
DT
DT
DT
9
9
9
N
11
6.66
1.10
109.80
116.46
A
A
A
C5'
C4'
O4'
DT
DT
DT
9
9
9
N
11
4.97
0.70
110.30
115.27
A
A
A
C1'
O4'
C4'
DT
DT
DT
9
9
9
N
11
-6.61
0.80
105.90
99.29
A
A
A
O4'
C1'
C2'
DT
DT
DT
9
9
9
N
11
3.43
0.50
113.10
116.53
A
A
A
N7
C8
N9
DG
DG
DG
10
10
10
N
11
4.48
0.30
108.30
112.78
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
11
6.30
0.30
108.30
114.60
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
11
-3.80
0.60
122.90
119.10
A
A
A
C6
C5
C7
DT
DT
DT
13
13
13
N
11
4.23
0.30
108.30
112.53
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
11
3.17
0.50
113.10
116.27
A
A
A
N7
C8
N9
DG
DG
DG
14
14
14
N
11
-2.44
0.40
106.40
103.96
A
A
A
C8
N9
C4
DG
DG
DG
14
14
14
N
11
3.14
0.50
113.10
116.24
A
A
A
N7
C8
N9
DG
DG
DG
15
15
15
N
12
4.98
0.30
108.30
113.28
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
12
3.48
0.50
113.10
116.58
A
A
A
N7
C8
N9
DG
DG
DG
1
1
1
N
12
8.41
1.20
119.70
128.11
A
A
A
C3'
O3'
P
DG
DG
DT
2
2
3
Y
12
2.65
0.30
108.30
110.95
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
12
9.20
1.10
109.80
119.00
A
A
A
C5'
C4'
O4'
DT
DT
DT
4
4
4
N
12
-5.90
0.80
105.90
100.00
A
A
A
O4'
C1'
C2'
DT
DT
DT
4
4
4
N
12
-3.33
0.50
104.30
100.97
A
A
A
C5
N7
C8
DG
DG
DG
5
5
5
N
12
3.89
0.50
113.10
116.99
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
12
3.66
0.60
106.00
109.66
A
A
A
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
12
7.80
1.10
109.80
117.60
A
A
A
C5'
C4'
O4'
DG
DG
DG
6
6
6
N
12
4.82
0.30
108.30
113.12
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
12
-3.16
0.50
104.30
101.14
A
A
A
C5
N7
C8
DG
DG
DG
6
6
6
N
12
4.12
0.50
113.10
117.22
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
12
-18.09
1.90
104.00
85.91
A
A
A
O3'
P
O5'
DG
DT
DT
6
7
7
Y
12
5.13
0.60
106.00
111.13
A
A
A
O4'
C4'
C3'
DT
DT
DT
7
7
7
N
12
-5.30
0.70
102.20
96.90
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
12
4.82
0.60
106.00
110.82
A
A
A
O4'
C4'
C3'
DG
DG
DG
8
8
8
N
12
13.45
1.10
109.80
123.25
A
A
A
C5'
C4'
O4'
DG
DG
DG
8
8
8
N
12
-7.15
0.70
102.20
95.05
A
A
A
C4'
C3'
C2'
DG
DG
DG
8
8
8
N
12
9.20
1.20
102.50
111.70
A
A
A
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
12
-6.65
0.80
105.90
99.25
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
12
-12.72
1.90
112.60
99.88
A
A
A
N9
C1'
C2'
DG
DG
DG
8
8
8
N
12
-3.03
0.50
104.30
101.27
A
A
A
C5
N7
C8
DG
DG
DG
8
8
8
N
12
4.01
0.50
113.10
117.11
A
A
A
N7
C8
N9
DG
DG
DG
8
8
8
N
12
-5.79
0.80
109.40
103.61
A
A
A
O5'
C5'
C4'
DT
DT
DT
9
9
9
N
12
-3.42
0.40
104.50
101.08
A
A
A
O4'
C4'
C3'
DT
DT
DT
9
9
9
N
12
3.60
0.30
108.30
111.90
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
12
-3.91
0.60
122.90
118.99
A
A
A
C6
C5
C7
DT
DT
DT
9
9
9
N
12
2.50
0.30
108.30
110.80
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
12
-3.15
0.50
104.30
101.15
A
A
A
C5
N7
C8
DG
DG
DG
11
11
11
N
12
3.70
0.50
113.10
116.80
A
A
A
N7
C8
N9
DG
DG
DG
11
11
11
N
12
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
12
-3.61
0.60
122.90
119.29
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
12
6.06
0.30
108.30
114.36
A
A
A
O4'
C1'
N1
DT
DT
DT
13
13
13
N
12
5.13
0.30
108.30
113.43
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
12
3.33
0.50
113.10
116.43
A
A
A
N7
C8
N9
DG
DG
DG
14
14
14
N
12
2.76
0.30
108.30
111.06
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
1
A
A
C5
C7
DT
DT
4
4
0.041
0.006
1.496
1.537
N
1
A
A
C5
C7
DT
DT
7
7
0.047
0.006
1.496
1.543
N
1
A
A
C5'
C4'
DG
DG
8
8
0.050
0.007
1.512
1.562
N
1
A
A
C5'
C4'
DT
DT
9
9
0.119
0.007
1.512
1.631
N
1
A
A
C5
C7
DT
DT
9
9
0.048
0.006
1.496
1.544
N
1
A
A
C5'
C4'
DG
DG
10
10
0.054
0.007
1.512
1.566
N
1
A
A
C5
C7
DT
DT
12
12
0.038
0.006
1.496
1.534
N
2
A
A
C5
C7
DT
DT
3
3
0.037
0.006
1.496
1.533
N
2
A
A
C5
C7
DT
DT
4
4
0.042
0.006
1.496
1.538
N
2
A
A
C8
N9
DG
DG
5
5
-0.043
0.007
1.374
1.331
N
2
A
A
C5
C7
DT
DT
7
7
0.045
0.006
1.496
1.541
N
2
A
A
C5'
C4'
DG
DG
8
8
0.061
0.007
1.512
1.573
N
2
A
A
C5'
C4'
DT
DT
9
9
0.129
0.007
1.512
1.641
N
2
A
A
C5
C7
DT
DT
12
12
0.038
0.006
1.496
1.534
N
3
A
A
C5
C7
DT
DT
4
4
0.040
0.006
1.496
1.536
N
3
A
A
C5
C7
DT
DT
7
7
0.043
0.006
1.496
1.539
N
3
A
A
C5'
C4'
DG
DG
8
8
0.051
0.007
1.512
1.563
N
3
A
A
C5'
C4'
DT
DT
9
9
0.121
0.007
1.512
1.633
N
3
A
A
C5
C7
DT
DT
9
9
0.041
0.006
1.496
1.537
N
3
A
A
C5
C7
DT
DT
12
12
0.039
0.006
1.496
1.535
N
4
A
A
C5
C7
DT
DT
3
3
0.040
0.006
1.496
1.536
N
4
A
A
C5'
C4'
DT
DT
4
4
0.043
0.007
1.512
1.555
N
4
A
A
C5'
C4'
DG
DG
5
5
0.047
0.007
1.512
1.559
N
4
A
A
C5
C7
DT
DT
7
7
0.041
0.006
1.496
1.537
N
4
A
A
C5'
C4'
DG
DG
8
8
0.061
0.007
1.512
1.573
N
4
A
A
C5'
C4'
DT
DT
9
9
0.134
0.007
1.512
1.646
N
4
A
A
C5
C7
DT
DT
12
12
0.038
0.006
1.496
1.534
N
5
A
A
C5
C7
DT
DT
3
3
0.036
0.006
1.496
1.532
N
5
A
A
C5
C7
DT
DT
4
4
0.036
0.006
1.496
1.532
N
5
A
A
C2'
C1'
DG
DG
6
6
-0.063
0.010
1.518
1.455
N
5
A
A
C8
N9
DG
DG
6
6
-0.048
0.007
1.374
1.326
N
5
A
A
C5
C7
DT
DT
7
7
0.039
0.006
1.496
1.535
N
5
A
A
C5'
C4'
DG
DG
8
8
0.058
0.007
1.512
1.570
N
5
A
A
C5'
C4'
DT
DT
9
9
0.085
0.007
1.512
1.597
N
5
A
A
C5
C7
DT
DT
9
9
0.039
0.006
1.496
1.535
N
5
A
A
C5'
C4'
DG
DG
10
10
0.057
0.007
1.512
1.569
N
5
A
A
C5
C7
DT
DT
12
12
0.039
0.006
1.496
1.535
N
6
A
A
C5
C7
DT
DT
3
3
0.038
0.006
1.496
1.534
N
6
A
A
C8
N9
DG
DG
6
6
-0.046
0.007
1.374
1.328
N
6
A
A
C5
C7
DT
DT
7
7
0.042
0.006
1.496
1.538
N
6
A
A
C5'
C4'
DG
DG
8
8
0.042
0.007
1.512
1.554
N
6
A
A
C5'
C4'
DT
DT
9
9
0.077
0.007
1.512
1.589
N
6
A
A
C5
C7
DT
DT
9
9
0.039
0.006
1.496
1.535
N
6
A
A
C5'
C4'
DG
DG
10
10
0.060
0.007
1.512
1.572
N
6
A
A
C5
C7
DT
DT
12
12
0.039
0.006
1.496
1.535
N
7
A
A
C5
C7
DT
DT
3
3
0.036
0.006
1.496
1.532
N
7
A
A
C5
C7
DT
DT
4
4
0.042
0.006
1.496
1.538
N
7
A
A
C5
C7
DT
DT
7
7
0.042
0.006
1.496
1.538
N
7
A
A
C5'
C4'
DG
DG
8
8
0.058
0.007
1.512
1.570
N
7
A
A
C5'
C4'
DT
DT
9
9
0.115
0.007
1.512
1.627
N
7
A
A
C5
C7
DT
DT
9
9
0.045
0.006
1.496
1.541
N
7
A
A
C5'
C4'
DG
DG
10
10
0.059
0.007
1.512
1.571
N
7
A
A
C5
C7
DT
DT
12
12
0.037
0.006
1.496
1.533
N
7
A
A
C5
C7
DT
DT
13
13
0.039
0.006
1.496
1.535
N
8
A
A
C2'
C1'
DG
DG
6
6
-0.065
0.010
1.518
1.453
N
8
A
A
C8
N9
DG
DG
6
6
-0.049
0.007
1.374
1.325
N
8
A
A
C5
C7
DT
DT
7
7
0.038
0.006
1.496
1.534
N
8
A
A
C5'
C4'
DT
DT
9
9
0.096
0.007
1.512
1.608
N
8
A
A
C5
C7
DT
DT
9
9
0.047
0.006
1.496
1.543
N
8
A
A
C5'
C4'
DG
DG
10
10
0.060
0.007
1.512
1.572
N
8
A
A
C5
C7
DT
DT
13
13
0.037
0.006
1.496
1.533
N
9
A
A
C5
C7
DT
DT
7
7
0.041
0.006
1.496
1.537
N
9
A
A
C5'
C4'
DG
DG
8
8
0.083
0.007
1.512
1.595
N
9
A
A
C5'
C4'
DT
DT
9
9
0.122
0.007
1.512
1.634
N
9
A
A
C5
C7
DT
DT
12
12
0.039
0.006
1.496
1.535
N
10
A
A
C5
C7
DT
DT
3
3
0.038
0.006
1.496
1.534
N
10
A
A
C5'
C4'
DG
DG
8
8
0.049
0.007
1.512
1.561
N
10
A
A
C5'
C4'
DT
DT
9
9
0.110
0.007
1.512
1.622
N
10
A
A
C5
C7
DT
DT
9
9
0.038
0.006
1.496
1.534
N
10
A
A
C5'
C4'
DG
DG
10
10
0.049
0.007
1.512
1.561
N
10
A
A
C5
C7
DT
DT
12
12
0.037
0.006
1.496
1.533
N
11
A
A
C3'
C2'
DG
DG
6
6
-0.049
0.008
1.516
1.467
N
11
A
A
C5
C7
DT
DT
7
7
0.046
0.006
1.496
1.542
N
11
A
A
C5'
C4'
DG
DG
8
8
0.067
0.007
1.512
1.579
N
11
A
A
C5'
C4'
DT
DT
9
9
0.123
0.007
1.512
1.635
N
11
A
A
C5
C7
DT
DT
12
12
0.036
0.006
1.496
1.532
N
11
A
A
C5
C7
DT
DT
13
13
0.037
0.006
1.496
1.533
N
12
A
A
C5
C7
DT
DT
3
3
0.039
0.006
1.496
1.535
N
12
A
A
C8
N9
DG
DG
6
6
-0.059
0.007
1.374
1.315
N
12
A
A
C5
C7
DT
DT
7
7
0.046
0.006
1.496
1.542
N
12
A
A
C5'
C4'
DT
DT
9
9
0.107
0.007
1.512
1.619
N
12
A
A
C5
C7
DT
DT
9
9
0.036
0.006
1.496
1.532
N
12
A
A
C5'
C4'
DG
DG
10
10
0.053
0.007
1.512
1.565
N
12
A
A
C5
C7
DT
DT
13
13
0.038
0.006
1.496
1.534
N
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE THROMBIN BINDING DNA APTAMER D(GGTTGGTGTGGTTGG)
1
N
N
hydrog
TYPE_6_PAIR
A
DG
1
A
N1
DG
1
1_555
A
DG
6
A
O6
DG
6
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
N2
DG
1
1_555
A
DG
6
A
N7
DG
6
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
N7
DG
1
1_555
A
DG
15
A
N2
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
O6
DG
1
1_555
A
DG
15
A
N1
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N7
DG
2
1_555
A
DG
5
A
N2
DG
5
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
O6
DG
2
1_555
A
DG
5
A
N1
DG
5
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N1
DG
2
1_555
A
DG
14
A
O6
DG
14
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N2
DG
2
1_555
A
DG
14
A
N7
DG
14
1_555
hydrog
TYPE_13_PAIR
A
DT
4
A
N3
DT
4
1_555
A
DT
13
A
O2
DT
13
1_555
hydrog
TYPE_13_PAIR
A
DT
4
A
O2
DT
4
1_555
A
DT
13
A
N3
DT
13
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N7
DG
5
1_555
A
DG
11
A
N2
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
O6
DG
5
1_555
A
DG
11
A
N1
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
6
A
N1
DG
6
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
6
A
N2
DG
6
1_555
A
DG
10
A
N7
DG
10
1_555
hydrog
DG-DG MISPAIR
A
DG
10
A
N1
DG
10
1_555
A
DG
14
A
O6
DG
14
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N1
DG
10
1_555
A
DG
15
A
O6
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N2
DG
10
1_555
A
DG
15
A
N7
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N7
DG
11
1_555
A
DG
14
A
N2
DG
14
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
O6
DG
11
1_555
A
DG
14
A
N1
DG
14
1_555
DNA
DNA
148D
PDB
1
148D
1
15
148D
1
15
148D
A
1
1
15
1
P 1