0.019646
0.000000
0.000000
0.000000
0.014859
0.000000
0.000000
0.000000
0.020161
0.00000
0.00000
0.00000
RESIDUES 162 - 164 IN WILD-TYPE AND ALL MUTANT LYSOZYMES ARE EXTREMELY MOBILE. THUS THE COORDINATES FOR THESE RESIDUES ARE VERY UNRELIABLE. THIS ENTRY DOES NOT INCLUDE RESIDUES 163 AND 164.
Kuroki, R.
Weaver, L.H.
Matthews, B.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
50.900
67.300
49.600
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C7 H14 N2 O4
190.197
n
2,6-DIAMINOPIMELIC ACID
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C3 H7 N O2
89.093
D-ALANINE
D-peptide linking
C5 H9 N O4
147.129
GAMMA-D-GLUTAMIC ACID
D-GLUTAMIC ACID
D-gamma-peptide, C-delta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C11 H19 N O8
293.270
N-acetyl-alpha-muramic acid
N-acetyl-muramic acid; N-ACETYLMURAMIC ACID
D-saccharide, alpha linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
C
N
15
S
C
N
16
N
C
N
17
N
C
N
18
N
C
N
19
R
C
N
20
N
C
N
21
N
O
N
22
N
O
N
23
N
O
N
24
N
O
N
25
N
N
N
26
N
N
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
C
N
48
N
N
N
49
N
C
N
50
N
N
N
51
N
N
N
52
N
O
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
N
N
69
S
C
N
70
N
C
N
71
N
O
N
72
N
C
N
73
N
C
N
74
N
O
N
75
N
N
N
76
N
O
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
S
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
S
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
R
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
S
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
R
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
R
C
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
N
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
Y
211
N
C
Y
212
N
N
Y
213
N
C
Y
214
N
C
Y
215
N
N
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
S
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
N
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
S
N
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
S
C
N
320
R
C
N
321
R
C
N
322
S
C
N
323
R
C
N
324
N
C
N
325
N
C
N
326
N
C
N
327
R
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
O
N
332
N
O
N
333
N
O
N
334
N
O
N
335
N
O
N
336
N
O
N
337
N
O
N
338
N
N
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
R
C
N
359
R
C
N
360
R
C
N
361
S
C
N
362
R
C
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
N
N
367
N
O
N
368
N
O
N
369
N
O
N
370
N
O
N
371
N
O
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
C
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
N
433
N
O
N
434
N
O
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
N
N
443
S
C
N
444
N
C
N
445
N
O
N
446
R
C
N
447
N
O
N
448
N
C
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
N
N
460
S
C
N
461
N
C
N
462
N
O
N
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
N
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
N
N
487
S
C
N
488
N
C
N
489
N
O
N
490
N
C
Y
491
N
C
Y
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
C
N
497
N
O
N
498
N
O
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
N
N
511
S
C
N
512
N
C
N
513
N
O
N
514
N
C
N
515
N
C
N
516
N
C
N
517
N
O
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
Y
205
N
sing
Y
206
N
doub
Y
207
N
doub
N
208
N
sing
Y
209
N
sing
N
210
N
sing
Y
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
Y
456
N
sing
Y
457
N
sing
N
458
N
sing
Y
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
doub
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
Y
479
N
doub
Y
480
N
sing
Y
481
N
sing
N
482
N
sing
Y
483
N
doub
N
484
N
sing
Y
485
N
doub
N
486
N
sing
Y
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
US
Science
SCIEAS
0038
0036-8075
262
2030
2033
8266098
A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme.
1993
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
193
189
Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution
1987
10.2210/pdb148l/pdb
pdb_0000148l
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
18656.373
T4 LYSOZYME
3.2.1.17
1
man
polymer
461.466
SUBSTRATE CLEAVED FROM CELL WALL OF ESCHERICHIA COLI
1
nat
polymer
496.463
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid
1
man
branched
78.133
BETA-MERCAPTOETHANOL
1
syn
non-polymer
18.015
water
140
nat
water
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYEIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
MNIFEMLRIDEGLRLKIYKDTEGYYEIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
E
polypeptide(L)
no
yes
A(FGA)(API)(DAL)
AEKA
S
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
sample
10665
Enterobacteria phage T4
PLASMID
M13
sample
562
ESCHERICHIA COLI
CELL WALL
2.17
43.25
pdbx_database_status
struct_conf
struct_conf_type
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_close_contact
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
atom_site
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Derived calculations
Other
Advisory
Atomic model
Data collection
Database references
Derived calculations
Structure summary
Atomic model
Data collection
Database references
Derived calculations
Structure summary
1
0
1994-04-30
1
1
2008-05-22
1
2
2011-07-13
1
3
2011-07-27
1
4
2017-11-29
2
0
2020-07-29
3
0
2023-11-15
_pdbx_database_status.process_site
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_label_atom_id
S
MUB
165
n
A
MUB
1
S
NAG
164
n
A
NAG
2
a-D-GlcpNAc3<C3O2>
MurNAc
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
SHEET
THERE ARE SEVERAL SUBTLE ASPECTS OF THE SECONDARY STRUCTURE
OF THIS MOLECULE WHICH CANNOT CONVENIENTLY BE REPRESENTED
IN THE HELIX AND SHEET RECORDS BELOW. THESE ASPECTS
INFLUENCE THE REPRESENTATION OF HELIX 6 AND STRAND 3 OF
SHEET *S1*. THE PAPER J.MOL.BIOL., V. 118, P. 81, 1978
BE CONSULTED FOR THESE SUBTLETIES.
Y
BNL
1993-10-27
REL
REL
oligosaccharide
DGlcpNAcb1-4MurNAc1-ROH
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a2122h-1a_1-5_2*NCC/3=O_3*OC^RCO/4=O/3C][a2122h-1b_1-5_2*NCC/3=O]/1-2/a4-b1
3
PDB2Glycan
1.1.0
WURCS
[][D-1-deoxy-GlcpNAc]{[(3+1)][<C3O1>]{}[(4+1)][b-D-GlcpNAc]{}}
3
PDB-CARE
LINUCS
C1
O4
NAG
MUB
2
1
3
O1
HO4
sing
n
n
BME
BETA-MERCAPTOETHANOL
HOH
water
BME
174
4
BME
BME
174
E
HOH
175
5
HOH
HOH
175
E
HOH
176
5
HOH
HOH
176
E
HOH
177
5
HOH
HOH
177
E
HOH
178
5
HOH
HOH
178
E
HOH
179
5
HOH
HOH
179
E
HOH
180
5
HOH
HOH
180
E
HOH
181
5
HOH
HOH
181
E
HOH
183
5
HOH
HOH
183
E
HOH
184
5
HOH
HOH
184
E
HOH
185
5
HOH
HOH
185
E
HOH
186
5
HOH
HOH
186
E
HOH
187
5
HOH
HOH
187
E
HOH
188
5
HOH
HOH
188
E
HOH
189
5
HOH
HOH
189
E
HOH
191
5
HOH
HOH
191
E
HOH
192
5
HOH
HOH
192
E
HOH
193
5
HOH
HOH
193
E
HOH
194
5
HOH
HOH
194
E
HOH
195
5
HOH
HOH
195
E
HOH
196
5
HOH
HOH
196
E
HOH
197
5
HOH
HOH
197
E
HOH
200
5
HOH
HOH
200
E
HOH
202
5
HOH
HOH
202
E
HOH
203
5
HOH
HOH
203
E
HOH
204
5
HOH
HOH
204
E
HOH
206
5
HOH
HOH
206
E
HOH
208
5
HOH
HOH
208
E
HOH
209
5
HOH
HOH
209
E
HOH
211
5
HOH
HOH
211
E
HOH
213
5
HOH
HOH
213
E
HOH
214
5
HOH
HOH
214
E
HOH
215
5
HOH
HOH
215
E
HOH
217
5
HOH
HOH
217
E
HOH
223
5
HOH
HOH
223
E
HOH
226
5
HOH
HOH
226
E
HOH
229
5
HOH
HOH
229
E
HOH
235
5
HOH
HOH
235
E
HOH
236
5
HOH
HOH
236
E
HOH
238
5
HOH
HOH
238
E
HOH
240
5
HOH
HOH
240
E
HOH
242
5
HOH
HOH
242
E
HOH
244
5
HOH
HOH
244
E
HOH
245
5
HOH
HOH
245
E
HOH
247
5
HOH
HOH
247
E
HOH
249
5
HOH
HOH
249
E
HOH
250
5
HOH
HOH
250
E
HOH
251
5
HOH
HOH
251
E
HOH
253
5
HOH
HOH
253
E
HOH
254
5
HOH
HOH
254
E
HOH
256
5
HOH
HOH
256
E
HOH
258
5
HOH
HOH
258
E
HOH
263
5
HOH
HOH
263
E
HOH
265
5
HOH
HOH
265
E
HOH
268
5
HOH
HOH
268
E
HOH
273
5
HOH
HOH
273
E
HOH
274
5
HOH
HOH
274
E
HOH
275
5
HOH
HOH
275
E
HOH
276
5
HOH
HOH
276
E
HOH
280
5
HOH
HOH
280
E
HOH
283
5
HOH
HOH
283
E
HOH
285
5
HOH
HOH
285
E
HOH
289
5
HOH
HOH
289
E
HOH
290
5
HOH
HOH
290
E
HOH
293
5
HOH
HOH
293
E
HOH
299
5
HOH
HOH
299
E
HOH
300
5
HOH
HOH
300
E
HOH
301
5
HOH
HOH
301
E
HOH
302
5
HOH
HOH
302
E
HOH
303
5
HOH
HOH
303
E
HOH
304
5
HOH
HOH
304
E
HOH
311
5
HOH
HOH
311
E
HOH
316
5
HOH
HOH
316
E
HOH
317
5
HOH
HOH
317
E
HOH
320
5
HOH
HOH
320
E
HOH
321
5
HOH
HOH
321
E
HOH
326
5
HOH
HOH
326
E
HOH
329
5
HOH
HOH
329
E
HOH
330
5
HOH
HOH
330
E
HOH
332
5
HOH
HOH
332
E
HOH
333
5
HOH
HOH
333
E
HOH
334
5
HOH
HOH
334
E
HOH
376
5
HOH
HOH
376
E
HOH
377
5
HOH
HOH
377
E
HOH
378
5
HOH
HOH
378
E
HOH
379
5
HOH
HOH
379
E
HOH
381
5
HOH
HOH
381
E
HOH
391
5
HOH
HOH
391
E
HOH
394
5
HOH
HOH
394
E
HOH
397
5
HOH
HOH
397
E
HOH
398
5
HOH
HOH
398
E
HOH
403
5
HOH
HOH
403
E
HOH
407
5
HOH
HOH
407
E
HOH
434
5
HOH
HOH
434
E
HOH
435
5
HOH
HOH
435
E
HOH
436
5
HOH
HOH
436
E
HOH
441
5
HOH
HOH
441
E
HOH
442
5
HOH
HOH
442
E
HOH
443
5
HOH
HOH
443
E
HOH
444
5
HOH
HOH
444
E
HOH
445
5
HOH
HOH
445
E
HOH
446
5
HOH
HOH
446
E
HOH
451
5
HOH
HOH
451
E
HOH
453
5
HOH
HOH
453
E
HOH
454
5
HOH
HOH
454
E
HOH
455
5
HOH
HOH
455
E
HOH
457
5
HOH
HOH
457
E
HOH
473
5
HOH
HOH
473
E
HOH
477
5
HOH
HOH
477
E
HOH
478
5
HOH
HOH
478
E
HOH
488
5
HOH
HOH
488
E
HOH
489
5
HOH
HOH
489
E
HOH
490
5
HOH
HOH
490
E
HOH
491
5
HOH
HOH
491
E
HOH
493
5
HOH
HOH
493
E
HOH
495
5
HOH
HOH
495
E
HOH
497
5
HOH
HOH
497
E
HOH
512
5
HOH
HOH
512
E
HOH
513
5
HOH
HOH
513
E
HOH
514
5
HOH
HOH
514
E
HOH
515
5
HOH
HOH
515
E
HOH
517
5
HOH
HOH
517
E
HOH
532
5
HOH
HOH
532
E
HOH
533
5
HOH
HOH
533
E
HOH
534
5
HOH
HOH
534
E
HOH
537
5
HOH
HOH
537
E
HOH
538
5
HOH
HOH
538
E
HOH
542
5
HOH
HOH
542
E
HOH
182
5
HOH
HOH
182
S
HOH
190
5
HOH
HOH
190
S
HOH
207
5
HOH
HOH
207
S
HOH
212
5
HOH
HOH
212
S
HOH
225
5
HOH
HOH
225
S
HOH
239
5
HOH
HOH
239
S
HOH
270
5
HOH
HOH
270
S
HOH
281
5
HOH
HOH
281
S
HOH
306
5
HOH
HOH
306
S
HOH
324
5
HOH
HOH
324
S
HOH
456
5
HOH
HOH
456
S
HOH
496
5
HOH
HOH
496
S
HOH
498
5
HOH
HOH
498
S
MET
1
n
1
MET
1
E
ASN
2
n
2
ASN
2
E
ILE
3
n
3
ILE
3
E
PHE
4
n
4
PHE
4
E
GLU
5
n
5
GLU
5
E
MET
6
n
6
MET
6
E
LEU
7
n
7
LEU
7
E
ARG
8
n
8
ARG
8
E
ILE
9
n
9
ILE
9
E
ASP
10
n
10
ASP
10
E
GLU
11
n
11
GLU
11
E
GLY
12
n
12
GLY
12
E
LEU
13
n
13
LEU
13
E
ARG
14
n
14
ARG
14
E
LEU
15
n
15
LEU
15
E
LYS
16
n
16
LYS
16
E
ILE
17
n
17
ILE
17
E
TYR
18
n
18
TYR
18
E
LYS
19
n
19
LYS
19
E
ASP
20
n
20
ASP
20
E
THR
21
n
21
THR
21
E
GLU
22
n
22
GLU
22
E
GLY
23
n
23
GLY
23
E
TYR
24
n
24
TYR
24
E
TYR
25
n
25
TYR
25
E
GLU
26
n
26
GLU
26
E
ILE
27
n
27
ILE
27
E
GLY
28
n
28
GLY
28
E
ILE
29
n
29
ILE
29
E
GLY
30
n
30
GLY
30
E
HIS
31
n
31
HIS
31
E
LEU
32
n
32
LEU
32
E
LEU
33
n
33
LEU
33
E
THR
34
n
34
THR
34
E
LYS
35
n
35
LYS
35
E
SER
36
n
36
SER
36
E
PRO
37
n
37
PRO
37
E
SER
38
n
38
SER
38
E
LEU
39
n
39
LEU
39
E
ASN
40
n
40
ASN
40
E
ALA
41
n
41
ALA
41
E
ALA
42
n
42
ALA
42
E
LYS
43
n
43
LYS
43
E
SER
44
n
44
SER
44
E
GLU
45
n
45
GLU
45
E
LEU
46
n
46
LEU
46
E
ASP
47
n
47
ASP
47
E
LYS
48
n
48
LYS
48
E
ALA
49
n
49
ALA
49
E
ILE
50
n
50
ILE
50
E
GLY
51
n
51
GLY
51
E
ARG
52
n
52
ARG
52
E
ASN
53
n
53
ASN
53
E
THR
54
n
54
THR
54
E
ASN
55
n
55
ASN
55
E
GLY
56
n
56
GLY
56
E
VAL
57
n
57
VAL
57
E
ILE
58
n
58
ILE
58
E
THR
59
n
59
THR
59
E
LYS
60
n
60
LYS
60
E
ASP
61
n
61
ASP
61
E
GLU
62
n
62
GLU
62
E
ALA
63
n
63
ALA
63
E
GLU
64
n
64
GLU
64
E
LYS
65
n
65
LYS
65
E
LEU
66
n
66
LEU
66
E
PHE
67
n
67
PHE
67
E
ASN
68
n
68
ASN
68
E
GLN
69
n
69
GLN
69
E
ASP
70
n
70
ASP
70
E
VAL
71
n
71
VAL
71
E
ASP
72
n
72
ASP
72
E
ALA
73
n
73
ALA
73
E
ALA
74
n
74
ALA
74
E
VAL
75
n
75
VAL
75
E
ARG
76
n
76
ARG
76
E
GLY
77
n
77
GLY
77
E
ILE
78
n
78
ILE
78
E
LEU
79
n
79
LEU
79
E
ARG
80
n
80
ARG
80
E
ASN
81
n
81
ASN
81
E
ALA
82
n
82
ALA
82
E
LYS
83
n
83
LYS
83
E
LEU
84
n
84
LEU
84
E
LYS
85
n
85
LYS
85
E
PRO
86
n
86
PRO
86
E
VAL
87
n
87
VAL
87
E
TYR
88
n
88
TYR
88
E
ASP
89
n
89
ASP
89
E
SER
90
n
90
SER
90
E
LEU
91
n
91
LEU
91
E
ASP
92
n
92
ASP
92
E
ALA
93
n
93
ALA
93
E
VAL
94
n
94
VAL
94
E
ARG
95
n
95
ARG
95
E
ARG
96
n
96
ARG
96
E
ALA
97
n
97
ALA
97
E
ALA
98
n
98
ALA
98
E
LEU
99
n
99
LEU
99
E
ILE
100
n
100
ILE
100
E
ASN
101
n
101
ASN
101
E
MET
102
n
102
MET
102
E
VAL
103
n
103
VAL
103
E
PHE
104
n
104
PHE
104
E
GLN
105
n
105
GLN
105
E
MET
106
n
106
MET
106
E
GLY
107
n
107
GLY
107
E
GLU
108
n
108
GLU
108
E
THR
109
n
109
THR
109
E
GLY
110
n
110
GLY
110
E
VAL
111
n
111
VAL
111
E
ALA
112
n
112
ALA
112
E
GLY
113
n
113
GLY
113
E
PHE
114
n
114
PHE
114
E
THR
115
n
115
THR
115
E
ASN
116
n
116
ASN
116
E
SER
117
n
117
SER
117
E
LEU
118
n
118
LEU
118
E
ARG
119
n
119
ARG
119
E
MET
120
n
120
MET
120
E
LEU
121
n
121
LEU
121
E
GLN
122
n
122
GLN
122
E
GLN
123
n
123
GLN
123
E
LYS
124
n
124
LYS
124
E
ARG
125
n
125
ARG
125
E
TRP
126
n
126
TRP
126
E
ASP
127
n
127
ASP
127
E
GLU
128
n
128
GLU
128
E
ALA
129
n
129
ALA
129
E
ALA
130
n
130
ALA
130
E
VAL
131
n
131
VAL
131
E
ASN
132
n
132
ASN
132
E
LEU
133
n
133
LEU
133
E
ALA
134
n
134
ALA
134
E
LYS
135
n
135
LYS
135
E
SER
136
n
136
SER
136
E
ARG
137
n
137
ARG
137
E
TRP
138
n
138
TRP
138
E
TYR
139
n
139
TYR
139
E
ASN
140
n
140
ASN
140
E
GLN
141
n
141
GLN
141
E
THR
142
n
142
THR
142
E
PRO
143
n
143
PRO
143
E
ASN
144
n
144
ASN
144
E
ARG
145
n
145
ARG
145
E
ALA
146
n
146
ALA
146
E
LYS
147
n
147
LYS
147
E
ARG
148
n
148
ARG
148
E
VAL
149
n
149
VAL
149
E
ILE
150
n
150
ILE
150
E
THR
151
n
151
THR
151
E
THR
152
n
152
THR
152
E
PHE
153
n
153
PHE
153
E
ARG
154
n
154
ARG
154
E
THR
155
n
155
THR
155
E
GLY
156
n
156
GLY
156
E
THR
157
n
157
THR
157
E
TRP
158
n
158
TRP
158
E
ASP
159
n
159
ASP
159
E
ALA
160
n
160
ALA
160
E
TYR
161
n
161
TYR
161
E
LYS
162
n
162
LYS
162
E
ASN
163
n
163
ASN
163
E
n
164
164
E
ALA
166
n
1
ALA
166
S
FGA
167
n
2
FGA
167
S
API
169
n
3
API
169
S
DAL
170
n
4
DAL
170
S
author_defined_assembly
2
dimeric
S
API
169
2,6-DIAMINOPIMELIC ACID
B
API
3
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
E
O
TYR
18
A
O
TYR
18
E
N
GLU
26
A
N
GLU
26
E
O
ILE
27
A
O
ILE
27
E
N
HIS
31
A
N
HIS
31
1
E
CA
ASN
163
A
CA
ASN
163
1
Y
1
E
C
ASN
163
A
C
ASN
163
1
Y
1
E
O
ASN
163
A
O
ASN
163
1
Y
1
E
CB
ASN
163
A
CB
ASN
163
1
Y
1
E
CG
ASN
163
A
CG
ASN
163
1
Y
1
E
OD1
ASN
163
A
OD1
ASN
163
1
Y
1
E
ND2
ASN
163
A
ND2
ASN
163
1
Y
1
E
LEU
164
A
LEU
164
1
Y
1
E
A
OE2
O5
GLU
MUB
26
1
2.17
1
-3.79
0.50
120.30
116.51
E
E
E
NE
CZ
NH2
ARG
ARG
ARG
14
14
14
N
1
6.32
0.90
118.30
124.62
E
E
E
CB
CG
OD1
ASP
ASP
ASP
47
47
47
N
1
-7.68
0.90
118.30
110.62
E
E
E
CB
CG
OD2
ASP
ASP
ASP
47
47
47
N
1
-6.23
0.90
118.30
112.07
E
E
E
CB
CG
OD2
ASP
ASP
ASP
61
61
61
N
1
6.91
0.90
118.30
125.21
E
E
E
CB
CG
OD1
ASP
ASP
ASP
72
72
72
N
1
10.79
1.40
123.60
134.39
E
E
E
CD
NE
CZ
ARG
ARG
ARG
76
76
76
N
1
7.44
0.50
120.30
127.74
E
E
E
NE
CZ
NH1
ARG
ARG
ARG
76
76
76
N
1
-5.61
0.50
120.30
114.69
E
E
E
NE
CZ
NH2
ARG
ARG
ARG
76
76
76
N
1
-3.53
0.50
120.30
116.77
E
E
E
NE
CZ
NH1
ARG
ARG
ARG
80
80
80
N
1
4.59
0.50
120.30
124.89
E
E
E
NE
CZ
NH2
ARG
ARG
ARG
80
80
80
N
1
-6.16
0.90
118.30
112.14
E
E
E
CB
CG
OD1
ASP
ASP
ASP
92
92
92
N
1
7.31
0.90
118.30
125.61
E
E
E
CB
CG
OD2
ASP
ASP
ASP
92
92
92
N
1
3.41
0.50
120.30
123.71
E
E
E
NE
CZ
NH1
ARG
ARG
ARG
119
119
119
N
1
4.75
0.50
120.30
125.05
E
E
E
NE
CZ
NH1
ARG
ARG
ARG
125
125
125
N
1
-6.57
0.90
118.30
111.73
E
E
E
CB
CG
OD2
ASP
ASP
ASP
127
127
127
N
1
3.71
0.50
120.30
124.01
E
E
E
NE
CZ
NH2
ARG
ARG
ARG
137
137
137
N
1
13.44
2.10
111.80
125.24
E
E
E
CG
CD
NE
ARG
ARG
ARG
145
145
145
A
A
A
N
1
E
E
CD
OE1
GLU
GLU
11
11
0.068
0.011
1.252
1.320
N
1
E
E
CD
OE2
GLU
GLU
62
62
0.074
0.011
1.252
1.326
N
1
E
E
CD
OE1
GLU
GLU
64
64
0.069
0.011
1.252
1.321
N
1
E
E
CD
OE2
GLU
GLU
108
108
0.069
0.011
1.252
1.321
N
1
E
E
CD
OE2
GLU
GLU
128
128
0.075
0.011
1.252
1.327
N
1
E
E
S2
S2
BME
BME
174
174
2.04
1_555
2_565
1
E
ILE
29
-105.16
79.13
RESIDUES 162 - 164 IN WILD-TYPE AND ALL MUTANT LYSOZYMES
ARE EXTREMELY MOBILE. THUS THE COORDINATES FOR THESE
RESIDUES ARE VERY UNRELIABLE. THIS ENTRY DOES NOT INCLUDE
RESIDUES 163 AND 164.
MUTANT SPACE GROUP, P 21 21 2, IS NONISOMORPHOUS TO WILD
TYPE. STARTING COORDINATES WERE BASED ON THE WILD-TYPE
MODEL.
0.1680000
1.90
20.0
11889
1
0.0
1.90
20.0
140
1503
36
0
1327
0.014
2.7
refinement
TNT
A COVALENT ENZYME-SUBSTRATE INTERMEDIATE WITH SACCHARIDE DISTORTION IN A MUTANT T4 LYSOZYME
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
E
ILE
3
A
ILE
3
HELX_P
E
GLU
11
A
GLU
11
1
H1
9
E
LEU
39
A
LEU
39
HELX_P
E
ILE
50
A
ILE
50
1
H2
12
E
LYS
60
A
LYS
60
HELX_P
E
ARG
80
A
ARG
80
1
H3
21
E
ALA
82
A
ALA
82
HELX_P
E
SER
90
A
SER
90
1
H4
9
E
ALA
93
A
ALA
93
HELX_P
E
MET
106
A
MET
106
1
H5
14
E
GLU
108
A
GLU
108
HELX_P
E
GLY
113
A
GLY
113
1
H6
6
E
THR
115
A
THR
115
HELX_P
E
GLN
123
A
GLN
123
1
H7
9
E
TRP
126
A
TRP
126
HELX_P
E
ALA
134
A
ALA
134
1
H8
9
E
ARG
137
A
ARG
137
HELX_P
E
GLN
141
A
GLN
141
1
H9
5
E
PRO
143
A
PRO
143
HELX_P
E
THR
155
A
THR
155
1
H10
13
covale
1.509
one
E
GLU
26
A
OE2
GLU
26
1_555
A
MUB
1
C
C1
MUB
1_555
covale
1.343
both
S
ALA
166
B
C
ALA
1
1_555
S
FGA
167
B
N
FGA
2
1_555
covale
1.351
one
S
ALA
166
B
N
ALA
1
1_555
A
MUB
1
C
C10
MUB
1_555
covale
1.300
both
S
FGA
167
B
CD
FGA
2
1_555
S
API
169
B
N
API
3
1_555
covale
1.310
both
S
API
169
B
C
API
3
1_555
S
DAL
170
B
N
DAL
4
1_555
covale
1.394
both
A
MUB
1
C
O4
MUB
1_555
A
NAG
2
C
C1
NAG
1_555
HYDROLASE/HYDROLASE SUBSTRATE
O-GLYCOSYL, HYDROLASE-HYDROLASE SUBSTRATE complex
LYCV_BPT4
UNP
1
1
P00720
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
148L
PDB
2
148L
AEKA
1
164
148L
1
164
P00720
E
1
1
164
166
170
148L
166
170
148L
S
2
1
4
1
THR
conflict
GLU
26
148L
E
P00720
UNP
26
26
1
CYS
conflict
THR
54
148L
E
P00720
UNP
54
54
1
CYS
conflict
ALA
97
148L
E
P00720
UNP
97
97
3
anti-parallel
anti-parallel
E
ARG
14
A
ARG
14
E
LYS
19
A
LYS
19
E
TYR
25
A
TYR
25
E
GLY
28
A
GLY
28
E
HIS
31
A
HIS
31
E
THR
34
A
THR
34
18
P 21 21 2