0.015823
0.000000
0.000000
0.000000
0.019608
0.000000
0.000000
0.000000
0.020747
0.00000
0.00000
0.00000
Matsumura, M.
Weaver, L.H.
Matthews, B.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
63.200
51.000
48.200
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
3
1031
1039
7920248
Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme.
1994
To be Published
0353
A Covalent Enzyme-Substrate Intermediate with Saccharide Distorsion in a Mutant T4 Lysozyme
US
Protein Sci.
PRCIEI
0795
0961-8368
1
46
Structure of a Stabilizing Disulfide Bridge Mutant that Closes the Active-Site Cleft of T4 Lysozyme
1992
US
Biochemistry
BICHAW
0033
0006-2960
29
2592
Structure of a Thermostable Disulfide-Bridge Mutant of Phage T4 Lysozyme Shows that an Engineered Cross-Link in a Flexible Region Does not Increase the Rigidity of the Folded Protein
1990
UK
Nature
NATUAS
0006
0028-0836
342
291
Substantial Increase of Protein Stability by Multiple Disulphide Bonds
1989
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
193
189
Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution
1987
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
101
298
1
Xuong-Hamlin
AREA DETECTOR
AREA DETECTOR
graphite
SINGLE WAVELENGTH
M
x-ray
1.5418
1
1.0
rotating-anode X-ray tube
Cu
RIGAKU RU200
18634.461
T4 LYSOZYME
3.2.1.17
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
52
nat
water
no
no
MNCFEMLRCDEGLRLKIYKDCEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQCPNRAKRVITTFRTGTWDA
YKNC
MNCFEMLRCDEGLRLKIYKDCEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQCPNRAKRVITTFRTGTWDA
YKNC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
sample
10665
Enterobacteria phage T4
PLASMID
M13
2.08
40.98
pdbx_database_status
struct_conf
struct_conf_type
diffrn
diffrn_detector
diffrn_radiation
diffrn_source
pdbx_database_status
software
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Data collection
Database references
Other
Refinement description
1
0
1994-05-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
1
4
2020-07-22
_pdbx_database_status.process_site
_diffrn.ambient_pressure
_diffrn.ambient_temp
_diffrn_radiation.monochromator
_diffrn_radiation.pdbx_diffrn_protocol
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l
_diffrn_radiation.pdbx_wavelength_list
_pdbx_database_status.status_code_sf
_struct_ref_seq_dif.details
Y
BNL
1994-01-26
REL
REL
SO4
SULFATE ION
HOH
water
SEQUENCE ADVISORY NOTICE
DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE.
SWISS-PROT ENTRY NAME: LYCV_BPT4
SWISS-PROT RESIDUE PDB SEQRES
NAME NUMBER NAME CHAIN SEQ
ILE 3 CYS 3
ILE 9 CYS 9
THR 21 CYS 21
CYS 54 THR 54
THR 142 CYS 142
LEU 164 CYS 164
SO4
200
2
SO4
SO4
200
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
CYS
3
n
3
CYS
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
CYS
9
n
9
CYS
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
CYS
21
n
21
CYS
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
THR
54
n
54
THR
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
CYS
97
n
97
CYS
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
ILE
100
n
100
ILE
100
A
ASN
101
n
101
ASN
101
A
MET
102
n
102
MET
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
MET
106
n
106
MET
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
VAL
111
n
111
VAL
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
MET
120
n
120
MET
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
ASP
127
n
127
ASP
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
CYS
142
n
142
CYS
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
PHE
153
n
153
PHE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
LYS
162
n
162
LYS
162
A
ASN
163
n
163
ASN
163
A
CYS
164
n
164
CYS
164
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
18
A
O
TYR
18
A
N
THR
26
A
N
THR
26
A
O
ILE
27
A
O
ILE
27
A
N
HIS
31
A
N
HIS
31
1
5.50
0.90
118.30
123.80
A
A
A
CB
CG
OD1
ASP
ASP
ASP
47
47
47
N
1
-6.73
0.90
118.30
111.57
A
A
A
CB
CG
OD2
ASP
ASP
ASP
47
47
47
N
1
-7.47
0.90
118.30
110.83
A
A
A
CB
CG
OD2
ASP
ASP
ASP
61
61
61
N
1
5.44
0.90
118.30
123.74
A
A
A
CB
CG
OD1
ASP
ASP
ASP
70
70
70
N
1
-6.56
0.90
118.30
111.74
A
A
A
CB
CG
OD2
ASP
ASP
ASP
70
70
70
N
1
6.50
0.90
118.30
124.80
A
A
A
CB
CG
OD2
ASP
ASP
ASP
72
72
72
N
1
-12.23
1.80
110.60
98.37
A
A
A
N
CA
CB
GLU
GLU
GLU
108
108
108
N
1
3.05
0.50
120.30
123.35
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
119
119
119
N
1
A
ASP
20
-66.39
-174.60
0.168
2.0
50.
1
0.0
2.0
50.
52
1359
5
0
1302
0.014
2.4
refinement
TNT
data scaling
Xengen (HOWARD, NIELSEN, XUONG)
LYSOZYME (E.C.3.2.1.17) MUTANT WITH ILE 3 REPLACED BY CYS, ILE 9 REPLACED BY CYS, THR 21 REPLACED BY CYS, CYS 54 REPLACED BY THR, THR 142 REPLACED BY CYS, AND LEU 164 REPLACED BY CYS (I3C,I9C,T21C,C54T,T142C,L164C)
CONSERVATION OF SOLVENT-BINDING SITES IN 10 CRYSTAL FORMS OF T4 LYSOZYME
1
N
N
2
N
N
3
N
N
A
CYS
3
A
CYS
3
HELX_P
A
GLU
11
A
GLU
11
1
H1
9
A
LEU
39
A
LEU
39
HELX_P
A
ILE
50
A
ILE
50
1
H2
12
A
LYS
60
A
LYS
60
HELX_P
A
ARG
80
A
ARG
80
1
H3
21
A
ALA
82
A
ALA
82
HELX_P
A
SER
90
A
SER
90
1
H4
9
A
ALA
93
A
ALA
93
HELX_P
A
MET
106
A
MET
106
1
H5
14
A
GLU
108
A
GLU
108
HELX_P
A
GLY
113
A
GLY
113
1
H6
6
A
THR
115
A
THR
115
HELX_P
A
GLN
123
A
GLN
123
1
H7
9
A
TRP
126
A
TRP
126
HELX_P
A
ALA
134
A
ALA
134
1
H8
9
A
ARG
137
A
ARG
137
HELX_P
A
GLN
141
A
GLN
141
1
H9
5
A
PRO
143
A
PRO
143
HELX_P
A
THR
155
A
THR
155
1
H10
13
disulf
1.954
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
97
A
SG
CYS
97
1_555
disulf
2.018
A
CYS
9
A
SG
CYS
9
1_555
A
CYS
164
A
SG
CYS
164
1_555
disulf
1.991
A
CYS
21
A
SG
CYS
21
1_555
A
CYS
142
A
SG
CYS
142
1_555
HYDROLASE(O-GLYCOSYL)
HYDROLASE(O-GLYCOSYL)
LYS_BPT4
UNP
1
1
P00720
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
1
163
152L
1
163
P00720
A
1
1
163
1
ILE
conflict
CYS
3
152L
A
P00720
UNP
3
3
1
ILE
conflict
CYS
9
152L
A
P00720
UNP
9
9
1
THR
conflict
CYS
21
152L
A
P00720
UNP
21
21
1
CYS
conflict
THR
54
152L
A
P00720
UNP
54
54
1
THR
conflict
CYS
142
152L
A
P00720
UNP
142
142
3
anti-parallel
anti-parallel
A
ARG
14
A
ARG
14
A
LYS
19
A
LYS
19
A
TYR
25
A
TYR
25
A
GLY
28
A
GLY
28
A
HIS
31
A
HIS
31
A
THR
34
A
THR
34
BINDING SITE FOR RESIDUE SO4 A 200
Software
9
A
CYS
21
A
CYS
21
9
1_555
A
LYS
83
A
LYS
83
9
3_654
A
CYS
142
A
CYS
142
9
1_555
A
PRO
143
A
PRO
143
9
1_555
A
ASN
144
A
ASN
144
9
1_555
A
ARG
145
A
ARG
145
9
1_555
A
HOH
220
C
HOH
9
3_654
A
HOH
250
C
HOH
9
1_555
A
HOH
251
C
HOH
9
1_555
19
P 21 21 21