0.015823 0.000000 0.000000 0.000000 0.019608 0.000000 0.000000 0.000000 0.020747 0.00000 0.00000 0.00000 Matsumura, M. Weaver, L.H. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 63.200 51.000 48.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 3 1031 1039 7920248 Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme. 1994 To be Published 0353 A Covalent Enzyme-Substrate Intermediate with Saccharide Distorsion in a Mutant T4 Lysozyme US Protein Sci. PRCIEI 0795 0961-8368 1 46 Structure of a Stabilizing Disulfide Bridge Mutant that Closes the Active-Site Cleft of T4 Lysozyme 1992 US Biochemistry BICHAW 0033 0006-2960 29 2592 Structure of a Thermostable Disulfide-Bridge Mutant of Phage T4 Lysozyme Shows that an Engineered Cross-Link in a Flexible Region Does not Increase the Rigidity of the Folded Protein 1990 UK Nature NATUAS 0006 0028-0836 342 291 Substantial Increase of Protein Stability by Multiple Disulphide Bonds 1989 UK J.Mol.Biol. JMOBAK 0070 0022-2836 193 189 Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution 1987 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 101 298 1 Xuong-Hamlin AREA DETECTOR AREA DETECTOR graphite SINGLE WAVELENGTH M x-ray 1.5418 1 1.0 rotating-anode X-ray tube Cu RIGAKU RU200 18634.461 T4 LYSOZYME 3.2.1.17 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 52 nat water no no MNCFEMLRCDEGLRLKIYKDCEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQCPNRAKRVITTFRTGTWDA YKNC MNCFEMLRCDEGLRLKIYKDCEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQCPNRAKRVITTFRTGTWDA YKNC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n T4-like viruses Enterobacteria phage T4 sensu lato sample 10665 Enterobacteria phage T4 PLASMID M13 2.08 40.98 pdbx_database_status struct_conf struct_conf_type diffrn diffrn_detector diffrn_radiation diffrn_source pdbx_database_status software struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Derived calculations Other Data collection Database references Other Refinement description 1 0 1994-05-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 1 4 2020-07-22 _pdbx_database_status.process_site _diffrn.ambient_pressure _diffrn.ambient_temp _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_wavelength_list _pdbx_database_status.status_code_sf _struct_ref_seq_dif.details Y BNL 1994-01-26 REL REL SO4 SULFATE ION HOH water SEQUENCE ADVISORY NOTICE DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: LYCV_BPT4 SWISS-PROT RESIDUE PDB SEQRES NAME NUMBER NAME CHAIN SEQ ILE 3 CYS 3 ILE 9 CYS 9 THR 21 CYS 21 CYS 54 THR 54 THR 142 CYS 142 LEU 164 CYS 164 SO4 200 2 SO4 SO4 200 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A CYS 3 n 3 CYS 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A CYS 9 n 9 CYS 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A CYS 21 n 21 CYS 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A THR 54 n 54 THR 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A CYS 97 n 97 CYS 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A MET 102 n 102 MET 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLN 105 n 105 GLN 105 A MET 106 n 106 MET 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A SER 117 n 117 SER 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A MET 120 n 120 MET 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A CYS 142 n 142 CYS 142 A PRO 143 n 143 PRO 143 A ASN 144 n 144 ASN 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A VAL 149 n 149 VAL 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A PHE 153 n 153 PHE 153 A ARG 154 n 154 ARG 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A ASN 163 n 163 ASN 163 A CYS 164 n 164 CYS 164 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 18 A O TYR 18 A N THR 26 A N THR 26 A O ILE 27 A O ILE 27 A N HIS 31 A N HIS 31 1 5.50 0.90 118.30 123.80 A A A CB CG OD1 ASP ASP ASP 47 47 47 N 1 -6.73 0.90 118.30 111.57 A A A CB CG OD2 ASP ASP ASP 47 47 47 N 1 -7.47 0.90 118.30 110.83 A A A CB CG OD2 ASP ASP ASP 61 61 61 N 1 5.44 0.90 118.30 123.74 A A A CB CG OD1 ASP ASP ASP 70 70 70 N 1 -6.56 0.90 118.30 111.74 A A A CB CG OD2 ASP ASP ASP 70 70 70 N 1 6.50 0.90 118.30 124.80 A A A CB CG OD2 ASP ASP ASP 72 72 72 N 1 -12.23 1.80 110.60 98.37 A A A N CA CB GLU GLU GLU 108 108 108 N 1 3.05 0.50 120.30 123.35 A A A NE CZ NH1 ARG ARG ARG 119 119 119 N 1 A ASP 20 -66.39 -174.60 0.168 2.0 50. 1 0.0 2.0 50. 52 1359 5 0 1302 0.014 2.4 refinement TNT data scaling Xengen (HOWARD, NIELSEN, XUONG) LYSOZYME (E.C.3.2.1.17) MUTANT WITH ILE 3 REPLACED BY CYS, ILE 9 REPLACED BY CYS, THR 21 REPLACED BY CYS, CYS 54 REPLACED BY THR, THR 142 REPLACED BY CYS, AND LEU 164 REPLACED BY CYS (I3C,I9C,T21C,C54T,T142C,L164C) CONSERVATION OF SOLVENT-BINDING SITES IN 10 CRYSTAL FORMS OF T4 LYSOZYME 1 N N 2 N N 3 N N A CYS 3 A CYS 3 HELX_P A GLU 11 A GLU 11 1 H1 9 A LEU 39 A LEU 39 HELX_P A ILE 50 A ILE 50 1 H2 12 A LYS 60 A LYS 60 HELX_P A ARG 80 A ARG 80 1 H3 21 A ALA 82 A ALA 82 HELX_P A SER 90 A SER 90 1 H4 9 A ALA 93 A ALA 93 HELX_P A MET 106 A MET 106 1 H5 14 A GLU 108 A GLU 108 HELX_P A GLY 113 A GLY 113 1 H6 6 A THR 115 A THR 115 HELX_P A GLN 123 A GLN 123 1 H7 9 A TRP 126 A TRP 126 HELX_P A ALA 134 A ALA 134 1 H8 9 A ARG 137 A ARG 137 HELX_P A GLN 141 A GLN 141 1 H9 5 A PRO 143 A PRO 143 HELX_P A THR 155 A THR 155 1 H10 13 disulf 1.954 A CYS 3 A SG CYS 3 1_555 A CYS 97 A SG CYS 97 1_555 disulf 2.018 A CYS 9 A SG CYS 9 1_555 A CYS 164 A SG CYS 164 1_555 disulf 1.991 A CYS 21 A SG CYS 21 1_555 A CYS 142 A SG CYS 142 1_555 HYDROLASE(O-GLYCOSYL) HYDROLASE(O-GLYCOSYL) LYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL 1 163 152L 1 163 P00720 A 1 1 163 1 ILE conflict CYS 3 152L A P00720 UNP 3 3 1 ILE conflict CYS 9 152L A P00720 UNP 9 9 1 THR conflict CYS 21 152L A P00720 UNP 21 21 1 CYS conflict THR 54 152L A P00720 UNP 54 54 1 THR conflict CYS 142 152L A P00720 UNP 142 142 3 anti-parallel anti-parallel A ARG 14 A ARG 14 A LYS 19 A LYS 19 A TYR 25 A TYR 25 A GLY 28 A GLY 28 A HIS 31 A HIS 31 A THR 34 A THR 34 BINDING SITE FOR RESIDUE SO4 A 200 Software 9 A CYS 21 A CYS 21 9 1_555 A LYS 83 A LYS 83 9 3_654 A CYS 142 A CYS 142 9 1_555 A PRO 143 A PRO 143 9 1_555 A ASN 144 A ASN 144 9 1_555 A ARG 145 A ARG 145 9 1_555 A HOH 220 C HOH 9 3_654 A HOH 250 C HOH 9 1_555 A HOH 251 C HOH 9 1_555 19 P 21 21 21