0.036914
0.000000
0.000000
0.000000
0.036914
0.000000
0.000000
0.000000
0.012212
0.00000
0.00000
0.00000
Peek, M.E.
Lipscomb, L.A.
Bertrand, J.A.
Gao, Q.
Roques, B.P.
Garbay-Jaureguiberry, C.
Williams, L.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
27.090
27.090
81.890
C9 H13 Br N3 O7 P
386.093
n
5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C42 H48 N6 O2 4
668.870
BIS-(N-ETHYLPYRIDINIUM-(3-METHOXYCARBAZOLE))HEXANE-1,6-DIAMINE
FLEXI-DI
non-polymer
H2 O
18.015
WATER
non-polymer
N
1
N
BR
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
N
N
7
N
C
N
8
N
C
N
9
N
O
N
10
N
N
N
11
N
C
N
12
N
N
N
13
N
C
N
14
N
C
N
15
N
C
N
16
R
C
N
17
N
O
N
18
R
C
N
19
S
C
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
N
47
N
N
N
48
N
C
N
49
N
O
N
50
N
N
N
51
N
C
N
52
N
N
N
53
N
C
N
54
N
C
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
O
N
70
N
P
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
C
N
75
R
C
N
76
N
O
N
77
S
C
N
78
N
O
N
79
N
C
N
80
R
C
Y
81
N
N
Y
82
N
C
Y
83
N
N
Y
84
N
C
N
85
N
C
N
86
N
O
N
87
N
N
N
88
N
C
N
89
N
N
N
90
N
N
Y
91
N
C
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
Y
106
N
C
Y
107
N
N
Y
108
N
C
Y
109
N
C
Y
110
N
C
Y
111
N
C
Y
112
N
N
Y
113
N
C
Y
114
N
C
Y
115
N
C
N
116
N
O
Y
117
N
C
Y
118
N
C
Y
119
N
C
Y
120
N
C
Y
121
N
C
Y
122
N
C
Y
123
N
C
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
C
Y
131
N
C
Y
132
N
N
Y
133
N
C
Y
134
N
C
Y
135
N
C
Y
136
N
C
Y
137
N
N
Y
138
N
C
Y
139
N
C
Y
140
N
C
N
141
N
O
Y
142
N
C
Y
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
Y
147
N
C
Y
148
N
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
N
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
O
N
205
N
H
N
206
N
H
N
1
N
sing
N
2
N
doub
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
Y
94
N
sing
Y
95
N
sing
Y
96
N
doub
N
97
N
sing
Y
98
N
sing
N
99
N
sing
Y
100
N
doub
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
doub
Y
111
N
sing
N
112
N
sing
Y
113
N
sing
N
114
N
sing
Y
115
N
doub
N
116
N
sing
Y
117
N
sing
N
118
N
sing
Y
119
N
doub
Y
120
N
sing
N
121
N
sing
Y
122
N
sing
N
123
N
sing
Y
124
N
sing
Y
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
N
129
N
sing
Y
130
N
doub
N
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
Y
135
N
doub
N
136
N
sing
Y
137
N
doub
Y
138
N
doub
Y
139
N
sing
Y
140
N
sing
Y
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
doub
Y
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
Y
173
N
sing
N
174
N
sing
Y
175
N
sing
N
176
N
sing
Y
177
N
sing
Y
178
N
sing
N
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
doub
N
184
N
sing
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
sing
Y
190
N
doub
Y
191
N
doub
Y
192
N
sing
Y
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
33
3794
3800
10.1021/bi00179a002
8142381
DNA distortion in bis-intercalated complexes.
1994
10.2210/pdb154d/pdb
pdb_0000154d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293.00
1
AREA DETECTOR
SDMS
x-ray
1
1.0
ROTATING ANODE
RIGAKU RU200
1270.714
DNA (5'-D(*(CBR)P*GP*CP*G)-3')
2
syn
polymer
668.870
BIS-(N-ETHYLPYRIDINIUM-(3-METHOXYCARBAZOLE))HEXANE-1,6-DIAMINE
1
syn
non-polymer
18.015
water
27
nat
water
no
yes
(CBR)(DG)(DC)(DG)
CGCG
A,B
polydeoxyribonucleotide
n
n
n
n
2.96
58.39
VAPOR DIFFUSION, SITTING DROP
7.00
pH 7.00, VAPOR DIFFUSION, SITTING DROP
ROOM TEMPERATURE
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
WATER
2
MPD
2
2.524
1
19
A
1
B
8
1.747
A_CBR1:DG8_B
1
-4.268
0.357
0.177
-0.348
-7.802
1
19
A
2
B
7
-2.794
A_DG2:DC7_B
2
3.583
-0.465
-0.277
-0.433
3.921
1
19
A
3
B
6
-0.516
A_DC3:DG6_B
3
7.024
-0.242
-0.139
-0.305
-4.085
1
19
A
4
B
5
4.106
A_DG4:CBR5_B
4
-6.668
-0.132
0.106
-0.212
6.877
18.469
A
A
1
2
3.424
B
B
8
7
6.996
1.076
0.953
-0.131
AA_CBR1DG2:DC7DG8_BB
1
6.392
-20.343
17.303
-1.697
4.695
3.152
26.808
A
A
2
3
-18.881
B
B
7
6
3.368
-8.598
0.521
0.014
AA_DG2DC3:DG6DC7_BB
2
-1.695
3.723
25.360
2.309
-1.574
6.992
24.603
A
A
3
4
-0.583
B
B
6
5
6.919
-0.247
-0.985
-0.380
AA_DC3DG4:CBR5DG6_BB
3
-3.829
9.021
24.306
-0.730
-0.206
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1994-08-31
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1993-12-14
REL
FLD
BIS-(N-ETHYLPYRIDINIUM-(3-METHOXYCARBAZOLE))HEXANE-1,6-DIAMINE
HOH
water
FLD
9
2
FLD
FLD
9
B
HOH
12
3
HOH
HOH
12
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
20
3
HOH
HOH
20
A
HOH
24
3
HOH
HOH
24
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
32
3
HOH
HOH
32
A
HOH
34
3
HOH
HOH
34
A
HOH
10
3
HOH
HOH
10
B
HOH
11
3
HOH
HOH
11
B
HOH
13
3
HOH
HOH
13
B
HOH
14
3
HOH
HOH
14
B
HOH
15
3
HOH
HOH
15
B
HOH
16
3
HOH
HOH
16
B
HOH
19
3
HOH
HOH
19
B
HOH
21
3
HOH
HOH
21
B
HOH
22
3
HOH
HOH
22
B
HOH
23
3
HOH
HOH
23
B
HOH
25
3
HOH
HOH
25
B
HOH
29
3
HOH
HOH
29
B
HOH
30
3
HOH
HOH
30
B
HOH
31
3
HOH
HOH
31
B
HOH
33
3
HOH
HOH
33
B
HOH
35
3
HOH
HOH
35
B
HOH
36
3
HOH
HOH
36
B
C
1
n
1
CBR
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
C
5
n
1
CBR
5
B
G
6
n
2
DG
6
B
C
7
n
3
DC
7
B
G
8
n
4
DG
8
B
author_defined_assembly
2
dimeric
A
CBR
1
A
CBR
1
DC
B
CBR
5
B
CBR
1
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-6.95
0.90
105.70
98.75
A
A
A
O5'
P
OP2
DG
DG
DG
2
2
2
N
1
-14.62
1.60
120.90
106.28
A
A
A
P
O5'
C5'
DG
DG
DG
2
2
2
N
1
4.34
0.30
108.30
112.64
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-4.92
0.60
125.10
120.18
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
5.12
0.60
123.90
129.02
A
A
A
N1
C2
N3
DG
DG
DG
2
2
2
N
1
-3.08
0.50
111.90
108.82
A
A
A
C2
N3
C4
DG
DG
DG
2
2
2
N
1
4.80
0.50
111.50
116.30
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
5.64
0.90
116.20
121.84
A
A
A
N1
C2
N2
DG
DG
DG
2
2
2
N
1
-10.77
0.70
119.90
109.13
A
A
A
N3
C2
N2
DG
DG
DG
2
2
2
N
1
-5.03
0.60
128.60
123.57
A
A
A
C5
C6
O6
DG
DG
DG
2
2
2
N
1
14.10
1.20
119.70
133.80
A
A
A
C3'
O3'
P
DG
DG
DC
2
2
3
Y
1
-8.60
0.90
105.70
97.10
A
A
A
O5'
P
OP1
DC
DC
DC
3
3
3
N
1
-11.00
0.80
109.40
98.40
A
A
A
O5'
C5'
C4'
DC
DC
DC
3
3
3
N
1
-21.19
1.60
120.90
99.71
A
A
A
P
O5'
C5'
DC
DC
DC
3
3
3
N
1
-8.68
0.40
104.50
95.82
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
N
1
-15.72
1.00
110.10
94.38
A
A
A
C1'
O4'
C4'
DC
DC
DC
3
3
3
N
1
-4.87
0.80
105.90
101.03
A
A
A
O4'
C1'
C2'
DC
DC
DC
3
3
3
N
1
4.69
0.50
119.90
124.59
A
A
A
C2
N3
C4
DC
DC
DC
3
3
3
N
1
-4.96
0.40
121.90
116.94
A
A
A
N3
C4
C5
DC
DC
DC
3
3
3
N
1
4.34
0.60
118.90
123.24
A
A
A
N1
C2
O2
DC
DC
DC
3
3
3
N
1
8.57
1.20
119.70
128.27
A
A
A
C3'
O3'
P
DC
DC
DG
3
3
4
Y
1
-5.99
0.80
109.40
103.41
A
A
A
O5'
C5'
C4'
DG
DG
DG
4
4
4
N
1
-6.38
0.40
104.50
98.12
A
A
A
O4'
C4'
C3'
DG
DG
DG
4
4
4
N
1
7.31
1.10
109.80
117.11
A
A
A
C5'
C4'
O4'
DG
DG
DG
4
4
4
N
1
-6.38
0.70
102.20
95.82
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
1
5.48
0.30
108.30
113.78
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
-7.07
0.60
125.10
118.03
A
A
A
C6
N1
C2
DG
DG
DG
4
4
4
N
1
6.81
0.60
123.90
130.71
A
A
A
N1
C2
N3
DG
DG
DG
4
4
4
N
1
-3.21
0.50
111.90
108.69
A
A
A
C2
N3
C4
DG
DG
DG
4
4
4
N
1
5.79
0.50
111.50
117.29
A
A
A
C5
C6
N1
DG
DG
DG
4
4
4
N
1
-10.84
0.70
119.90
109.06
A
A
A
N3
C2
N2
DG
DG
DG
4
4
4
N
1
-3.79
0.60
128.60
124.81
A
A
A
C5
C6
O6
DG
DG
DG
4
4
4
N
1
-10.29
1.60
120.90
110.61
B
B
B
P
O5'
C5'
DG
DG
DG
6
6
6
N
1
-5.95
0.80
105.90
99.95
B
B
B
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
1
4.35
0.30
108.30
112.65
B
B
B
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-6.61
0.60
125.10
118.49
B
B
B
C6
N1
C2
DG
DG
DG
6
6
6
N
1
6.16
0.60
123.90
130.06
B
B
B
N1
C2
N3
DG
DG
DG
6
6
6
N
1
5.84
0.50
111.50
117.34
B
B
B
C5
C6
N1
DG
DG
DG
6
6
6
N
1
-10.52
0.70
119.90
109.38
B
B
B
N3
C2
N2
DG
DG
DG
6
6
6
N
1
-5.54
0.60
128.60
123.06
B
B
B
C5
C6
O6
DG
DG
DG
6
6
6
N
1
9.50
1.20
119.70
129.20
B
B
B
C3'
O3'
P
DG
DG
DC
6
6
7
Y
1
-7.52
0.90
105.70
98.18
B
B
B
O5'
P
OP1
DC
DC
DC
7
7
7
N
1
-13.43
1.60
120.90
107.47
B
B
B
P
O5'
C5'
DC
DC
DC
7
7
7
N
1
-7.83
0.40
104.50
96.67
B
B
B
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
1
-8.76
1.00
110.10
101.34
B
B
B
C1'
O4'
C4'
DC
DC
DC
7
7
7
N
1
5.91
0.50
119.90
125.81
B
B
B
C2
N3
C4
DC
DC
DC
7
7
7
N
1
-5.49
0.40
121.90
116.41
B
B
B
N3
C4
C5
DC
DC
DC
7
7
7
N
1
5.44
0.60
118.90
124.34
B
B
B
N1
C2
O2
DC
DC
DC
7
7
7
N
1
11.44
1.20
119.70
131.14
B
B
B
C3'
O3'
P
DC
DC
DG
7
7
8
Y
1
-5.40
0.90
105.70
100.30
B
B
B
O5'
P
OP1
DG
DG
DG
8
8
8
N
1
-3.64
0.40
104.50
100.86
B
B
B
O4'
C4'
C3'
DG
DG
DG
8
8
8
N
1
10.46
1.10
109.80
120.26
B
B
B
C5'
C4'
O4'
DG
DG
DG
8
8
8
N
1
-6.09
0.60
125.10
119.01
B
B
B
C6
N1
C2
DG
DG
DG
8
8
8
N
1
5.38
0.60
123.90
129.28
B
B
B
N1
C2
N3
DG
DG
DG
8
8
8
N
1
6.61
0.50
111.50
118.11
B
B
B
C5
C6
N1
DG
DG
DG
8
8
8
N
1
-9.43
0.70
119.90
110.47
B
B
B
N3
C2
N2
DG
DG
DG
8
8
8
N
1
-3.64
0.60
128.60
124.96
B
B
B
C5
C6
O6
DG
DG
DG
8
8
8
N
1
A
A
P
O5'
DG
DG
2
2
0.082
0.010
1.593
1.675
N
1
A
A
O3'
C3'
DG
DG
2
2
-0.054
0.006
1.419
1.365
N
1
A
A
C6
N1
DG
DG
2
2
-0.064
0.007
1.391
1.327
N
1
A
A
N7
C8
DG
DG
2
2
0.042
0.006
1.305
1.347
N
1
A
A
C8
N9
DG
DG
2
2
-0.047
0.007
1.374
1.327
N
1
A
A
C2
N2
DG
DG
2
2
-0.113
0.010
1.341
1.228
N
1
A
A
P
O5'
DC
DC
3
3
0.077
0.010
1.593
1.670
N
1
A
A
O5'
C5'
DC
DC
3
3
0.103
0.016
1.440
1.543
N
1
A
A
C4'
C3'
DC
DC
3
3
0.078
0.010
1.529
1.607
N
1
A
A
C2'
C1'
DC
DC
3
3
0.071
0.010
1.519
1.590
N
1
A
A
O3'
C3'
DC
DC
3
3
-0.054
0.006
1.419
1.365
N
1
A
A
N3
C4
DC
DC
3
3
0.049
0.007
1.335
1.384
N
1
A
A
C4'
C3'
DG
DG
4
4
0.081
0.010
1.529
1.610
N
1
A
A
C2'
C1'
DG
DG
4
4
0.070
0.010
1.519
1.589
N
1
A
A
O3'
C3'
DG
DG
4
4
-0.043
0.006
1.419
1.376
N
1
A
A
C6
N1
DG
DG
4
4
-0.057
0.007
1.391
1.334
N
1
A
A
N7
C8
DG
DG
4
4
0.037
0.006
1.305
1.342
N
1
A
A
C2
N2
DG
DG
4
4
-0.094
0.010
1.341
1.247
N
1
B
B
C2'
C1'
DG
DG
6
6
0.086
0.010
1.519
1.605
N
1
B
B
C6
N1
DG
DG
6
6
-0.059
0.007
1.391
1.332
N
1
B
B
C2
N2
DG
DG
6
6
-0.116
0.010
1.341
1.225
N
1
B
B
C4'
C3'
DC
DC
7
7
0.066
0.010
1.529
1.595
N
1
B
B
O4'
C1'
DC
DC
7
7
0.068
0.011
1.420
1.488
N
1
B
B
O3'
C3'
DC
DC
7
7
-0.041
0.006
1.419
1.378
N
1
B
B
C4'
C3'
DG
DG
8
8
0.068
0.010
1.529
1.597
N
1
B
B
C6
N1
DG
DG
8
8
-0.063
0.007
1.391
1.328
N
1
B
B
N7
C8
DG
DG
8
8
0.044
0.006
1.305
1.349
N
1
B
B
C8
N9
DG
DG
8
8
-0.062
0.007
1.374
1.312
N
1
B
B
C2
N2
DG
DG
8
8
-0.097
0.010
1.341
1.244
N
0.239
2.500
7.100
1183
99.700
1
2.000
TR
isotropic
TR
isotropic
2.500
7.100
27
237
52
158
0
0.021
fix
fix
2.500
154D
2139
1183
2.000
1
refinement
PROLSQ
(MODIFIED BY G.J.QUIGLEY)
refinement
MODIFIED
BY G.J.QUIGLEY
DNA DISTORTION IN BIS-INTERCALATED COMPLEXES
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
covale
1.606
both
A
CBR
1
A
O3'
CBR
1
1_555
A
DG
2
A
P
DG
2
1_555
covale
1.597
both
B
CBR
5
B
O3'
CBR
1
1_555
B
DG
6
B
P
DG
2
1_555
hydrog
WATSON-CRICK
A
CBR
1
A
N3
CBR
1
1_555
B
DG
8
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
CBR
1
A
N4
CBR
1
1_555
B
DG
8
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
CBR
1
A
O2
CBR
1
1_555
B
DG
8
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
7
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
7
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
7
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
6
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
6
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
6
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
CBR
5
B
N3
CBR
1
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
CBR
5
B
O2
CBR
1
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
CBR
5
B
N4
CBR
1
1_555
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA
154D
PDB
1
154D
1
4
154D
1
4
154D
A
1
1
4
5
8
154D
5
8
154D
B
1
1
4
BINDING SITE FOR RESIDUE FLD B 9
B
FLD
9
Software
11
A
CBR
1
A
CBR
1
11
1_555
A
DG
2
A
DG
2
11
1_555
A
DC
3
A
DC
3
11
1_555
A
DG
4
A
DG
4
11
1_555
B
CBR
5
B
CBR
1
11
1_555
B
DG
6
B
DG
2
11
1_555
B
DC
7
B
DC
3
11
6_455
B
DC
7
B
DC
3
11
1_555
B
DG
8
B
DG
4
11
1_555
B
HOH
11
E
HOH
11
1_555
B
HOH
33
E
HOH
11
1_555
92
P 41 21 2