0.018839
0.010877
0.000000
0.000000
0.021754
0.000000
0.000000
0.000000
0.029138
0.00000
0.00000
0.00000
Grzeskowiak, K.
Goodsell, D.S.
Kaczor-Grzeskowiak, M.
Cascio, D.
Dickerson, R.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
53.080
53.080
34.320
Ca 2
40.078
CALCIUM ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
CA
N
2
N
O
N
3
N
P
N
4
N
O
N
5
N
O
N
6
N
O
N
7
N
C
N
8
R
C
N
9
N
O
N
10
S
C
N
11
N
O
N
12
N
C
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
P
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
C
N
115
R
C
N
116
N
O
N
117
S
C
N
118
N
O
N
119
N
C
N
120
R
C
N
121
N
N
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
32
8923
8931
10.1021/bi00085a025
8364037
Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA.
1993
10.2210/pdb158d/pdb
pdb_0000158d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
278.00
1
IMAGE PLATE
RIGAKU RAXIS II
x-ray
1
1.0
3045.004
DNA (5'-D(*CP*CP*AP*AP*GP*CP*TP*TP*GP*G)-3')
2
syn
polymer
40.078
CALCIUM ION
2
syn
non-polymer
18.015
water
75
nat
water
no
no
(DC)(DC)(DA)(DA)(DG)(DC)(DT)(DT)(DG)(DG)
CCAAGCTTGG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
2.29
46.33
VAPOR DIFFUSION
7.50
pH 7.50, VAPOR DIFFUSION, temperature 278.00K
278.00
WATER
1
MPD
1
CA ACETATE
1
WATER
2
MPD
2
-8.419
1
19
A
1
B
20
-0.518
A_DC1:DG20_B
1
-16.117
0.091
0.089
-0.216
-3.674
1
19
A
2
B
19
-3.044
A_DC2:DG19_B
2
-7.949
0.256
0.049
-0.083
-1.595
1
20
A
3
B
18
2.102
A_DA3:DT18_B
3
-6.094
0.153
0.169
-0.028
11.017
1
20
A
4
B
17
0.745
A_DA4:DT17_B
4
-9.527
0.041
0.253
-0.047
11.759
1
19
A
5
B
16
0.734
A_DG5:DC16_B
5
-8.242
-0.057
0.432
-0.074
-7.997
1
19
A
6
B
15
0.207
A_DC6:DG15_B
6
-14.064
0.183
0.148
0.005
-13.231
1
20
A
7
B
14
2.483
A_DT7:DA14_B
7
-11.996
-0.226
0.316
-0.132
-6.781
1
20
A
8
B
13
2.106
A_DT8:DA13_B
8
-9.816
0.045
0.291
-0.085
-1.184
1
19
A
9
B
12
-2.881
A_DG9:DC12_B
9
-7.629
-0.292
0.007
-0.308
7.963
1
19
A
10
B
11
-1.138
A_DG10:DC11_B
10
-16.712
0.072
0.213
-0.221
3.243
31.551
A
A
1
2
18.566
B
B
20
19
3.259
9.925
-0.461
0.574
AA_DC1DC2:DG19DG20_BB
1
1.942
-3.633
29.925
-0.829
1.217
2.955
48.908
A
A
2
3
-6.826
B
B
19
18
3.256
-5.639
0.235
2.530
AA_DC2DA3:DT18DG19_BB
2
-1.555
1.882
48.578
3.463
-0.396
3.241
24.858
A
A
3
4
22.153
B
B
18
17
3.159
9.310
0.621
0.843
AA_DA3DA4:DT17DT18_BB
3
-0.234
0.558
23.073
-0.888
-1.515
3.281
37.526
A
A
4
5
-1.157
B
B
17
16
3.296
-0.743
0.031
-0.147
AA_DA4DG5:DC16DT17_BB
4
-3.562
5.545
37.355
-0.131
-0.517
3.623
39.225
A
A
5
6
4.193
B
B
16
15
3.727
2.809
0.026
-1.204
AA_DG5DC6:DG15DC16_BB
5
3.600
-5.374
38.968
-2.171
0.446
3.419
34.765
A
A
6
7
2.386
B
B
15
14
3.429
1.425
0.106
-0.217
AA_DC6DT7:DA14DG15_BB
6
1.571
-2.631
34.702
-0.591
0.074
3.239
29.442
A
A
7
8
22.509
B
B
14
13
3.255
11.165
-0.389
0.568
AA_DT7DT8:DA13DA14_BB
7
-0.525
1.058
27.282
-1.347
0.649
2.788
47.878
A
A
8
9
-7.580
B
B
13
12
3.134
-6.134
-0.308
2.535
AA_DT8DG9:DC12DA13_BB
8
2.346
-2.899
47.452
3.566
0.549
3.181
31.393
A
A
9
10
18.963
B
B
12
11
3.201
10.068
0.344
0.625
AA_DG9DG10:DC11DC12_BB
9
-3.389
6.384
29.584
-0.748
-1.276
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1994-05-31
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1994-02-03
REL
REL
CA
CALCIUM ION
HOH
water
OC7
21
2
CA
CA
21
A
OC6
22
2
CA
CA
22
B
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
35
3
HOH
HOH
35
A
HOH
37
3
HOH
HOH
37
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
48
3
HOH
HOH
48
A
HOH
50
3
HOH
HOH
50
A
HOH
51
3
HOH
HOH
51
A
HOH
52
3
HOH
HOH
52
A
HOH
57
3
HOH
HOH
57
A
HOH
59
3
HOH
HOH
59
A
HOH
66
3
HOH
HOH
66
A
HOH
69
3
HOH
HOH
69
A
HOH
75
3
HOH
HOH
75
A
HOH
76
3
HOH
HOH
76
A
HOH
77
3
HOH
HOH
77
A
HOH
79
3
HOH
HOH
79
A
HOH
81
3
HOH
HOH
81
A
HOH
82
3
HOH
HOH
82
A
OC7
21
3
HOH
HOH
86
A
OC7
21
3
HOH
HOH
87
A
OC7
21
3
HOH
HOH
88
A
OC7
21
3
HOH
HOH
89
A
OC7
21
3
HOH
HOH
91
A
OC6
22
3
HOH
HOH
92
A
OC6
22
3
HOH
HOH
97
A
HOH
23
3
HOH
HOH
23
B
HOH
24
3
HOH
HOH
24
B
HOH
27
3
HOH
HOH
27
B
HOH
30
3
HOH
HOH
30
B
HOH
31
3
HOH
HOH
31
B
HOH
34
3
HOH
HOH
34
B
HOH
36
3
HOH
HOH
36
B
HOH
38
3
HOH
HOH
38
B
HOH
39
3
HOH
HOH
39
B
HOH
42
3
HOH
HOH
42
B
HOH
43
3
HOH
HOH
43
B
HOH
44
3
HOH
HOH
44
B
HOH
45
3
HOH
HOH
45
B
HOH
46
3
HOH
HOH
46
B
HOH
47
3
HOH
HOH
47
B
HOH
49
3
HOH
HOH
49
B
HOH
53
3
HOH
HOH
53
B
HOH
54
3
HOH
HOH
54
B
HOH
55
3
HOH
HOH
55
B
HOH
56
3
HOH
HOH
56
B
HOH
58
3
HOH
HOH
58
B
HOH
60
3
HOH
HOH
60
B
HOH
61
3
HOH
HOH
61
B
HOH
62
3
HOH
HOH
62
B
HOH
63
3
HOH
HOH
63
B
HOH
64
3
HOH
HOH
64
B
HOH
65
3
HOH
HOH
65
B
HOH
67
3
HOH
HOH
67
B
HOH
68
3
HOH
HOH
68
B
HOH
70
3
HOH
HOH
70
B
HOH
71
3
HOH
HOH
71
B
HOH
72
3
HOH
HOH
72
B
HOH
73
3
HOH
HOH
73
B
HOH
74
3
HOH
HOH
74
B
HOH
78
3
HOH
HOH
78
B
HOH
80
3
HOH
HOH
80
B
HOH
83
3
HOH
HOH
83
B
HOH
84
3
HOH
HOH
84
B
OC7
21
3
HOH
HOH
85
B
OC7
21
3
HOH
HOH
90
B
OC6
22
3
HOH
HOH
93
B
OC6
22
3
HOH
HOH
94
B
OC6
22
3
HOH
HOH
95
B
OC6
22
3
HOH
HOH
96
B
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
A
3
n
3
DA
3
A
A
4
n
4
DA
4
A
G
5
n
5
DG
5
A
C
6
n
6
DC
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
C
11
n
1
DC
11
B
C
12
n
2
DC
12
B
A
13
n
3
DA
13
B
A
14
n
4
DA
14
B
G
15
n
5
DG
15
B
C
16
n
6
DC
16
B
T
17
n
7
DT
17
B
T
18
n
8
DT
18
B
G
19
n
9
DG
19
B
G
20
n
10
DG
20
B
author_defined_assembly
2
dimeric
A
HOH
86
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
87
E
O
HOH
1_555
71.8
A
HOH
86
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
88
E
O
HOH
1_555
142.0
A
HOH
87
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
88
E
O
HOH
1_555
70.7
A
HOH
86
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
89
E
O
HOH
1_555
151.0
A
HOH
87
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
89
E
O
HOH
1_555
133.3
A
HOH
88
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
89
E
O
HOH
1_555
66.3
A
HOH
86
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
91
E
O
HOH
1_555
90.9
A
HOH
87
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
91
E
O
HOH
1_555
87.1
A
HOH
88
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
91
E
O
HOH
1_555
93.2
A
HOH
89
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
A
HOH
91
E
O
HOH
1_555
78.2
A
HOH
86
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
85
F
O
HOH
1_555
73.8
A
HOH
87
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
85
F
O
HOH
1_555
145.1
A
HOH
88
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
85
F
O
HOH
1_555
144.1
A
HOH
89
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
85
F
O
HOH
1_555
78.8
A
HOH
91
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
85
F
O
HOH
1_555
87.5
A
HOH
86
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
90
F
O
HOH
1_555
93.1
A
HOH
87
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
90
F
O
HOH
1_555
101.2
A
HOH
88
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
90
F
O
HOH
1_555
88.3
A
HOH
89
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
90
F
O
HOH
1_555
94.8
A
HOH
91
E
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
90
F
O
HOH
1_555
171.5
B
HOH
85
F
O
HOH
1_555
A
CA
21
C
CA
CA
1_555
B
HOH
90
F
O
HOH
1_555
86.4
A
HOH
92
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
A
HOH
97
E
O
HOH
1_555
75.9
A
HOH
92
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
93
F
O
HOH
1_555
79.1
A
HOH
97
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
93
F
O
HOH
1_555
93.3
A
HOH
92
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
94
F
O
HOH
1_555
153.4
A
HOH
97
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
94
F
O
HOH
1_555
105.9
B
HOH
93
F
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
94
F
O
HOH
1_555
74.3
A
HOH
92
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
95
F
O
HOH
1_555
137.7
A
HOH
97
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
95
F
O
HOH
1_555
85.8
B
HOH
93
F
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
95
F
O
HOH
1_555
140.6
B
HOH
94
F
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
95
F
O
HOH
1_555
68.2
A
HOH
92
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
96
F
O
HOH
1_555
74.9
A
HOH
97
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
96
F
O
HOH
1_555
86.9
B
HOH
93
F
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
96
F
O
HOH
1_555
153.1
B
HOH
94
F
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
96
F
O
HOH
1_555
131.4
B
HOH
95
F
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
B
HOH
96
F
O
HOH
1_555
66.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
HOH
30
F
HOH
1
-2.78
0.40
121.90
119.12
A
A
A
N3
C4
C5
DC
DC
DC
2
2
2
N
1
-3.01
0.50
117.70
114.69
A
A
A
C5
C6
N1
DA
DA
DA
3
3
3
N
1
-6.37
0.80
102.40
96.03
A
A
A
C3'
C2'
C1'
DA
DA
DA
4
4
4
N
1
6.90
0.30
108.30
115.20
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
3.62
0.60
118.60
122.22
A
A
A
C6
N1
C2
DA
DA
DA
4
4
4
N
1
-3.35
0.50
129.30
125.95
A
A
A
N1
C2
N3
DA
DA
DA
4
4
4
N
1
14.86
1.20
119.70
134.56
A
A
A
C3'
O3'
P
DA
DA
DG
4
4
5
Y
1
4.98
0.30
108.30
113.28
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
-4.15
0.60
125.10
120.95
A
A
A
C6
N1
C2
DG
DG
DG
5
5
5
N
1
3.13
0.50
111.50
114.63
A
A
A
C5
C6
N1
DG
DG
DG
5
5
5
N
1
-3.82
0.60
119.90
116.08
A
A
A
N1
C6
O6
DG
DG
DG
5
5
5
N
1
7.54
1.20
119.70
127.24
A
A
A
C3'
O3'
P
DC
DC
DT
6
6
7
Y
1
8.82
1.10
110.50
119.32
A
A
A
O3'
P
OP2
DC
DT
DT
6
7
7
Y
1
-5.78
0.90
105.70
99.92
A
A
A
O5'
P
OP2
DT
DT
DT
7
7
7
N
1
-6.20
0.60
127.20
121.00
A
A
A
C2
N3
C4
DT
DT
DT
7
7
7
N
1
5.27
0.60
115.20
120.47
A
A
A
N3
C4
C5
DT
DT
DT
7
7
7
N
1
-9.27
0.80
109.40
100.13
A
A
A
O5'
C5'
C4'
DT
DT
DT
8
8
8
N
1
-5.43
0.60
127.20
121.77
A
A
A
C2
N3
C4
DT
DT
DT
8
8
8
N
1
3.91
0.60
115.20
119.11
A
A
A
N3
C4
C5
DT
DT
DT
8
8
8
N
1
-3.87
0.60
119.90
116.03
A
A
A
N3
C4
O4
DT
DT
DT
8
8
8
N
1
10.93
1.20
119.70
130.63
A
A
A
C3'
O3'
P
DT
DT
DG
8
8
9
Y
1
-5.88
0.70
108.00
102.12
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
3.02
0.50
111.50
114.52
A
A
A
C5
C6
N1
DG
DG
DG
9
9
9
N
1
-3.62
0.60
128.60
124.98
A
A
A
C5
C6
O6
DG
DG
DG
9
9
9
N
1
-10.01
1.50
119.60
109.59
A
A
A
OP1
P
OP2
DG
DG
DG
10
10
10
N
1
-5.99
0.80
109.40
103.41
A
A
A
O5'
C5'
C4'
DG
DG
DG
10
10
10
N
1
3.61
0.30
108.30
111.91
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-4.90
0.80
102.40
97.50
B
B
B
C3'
C2'
C1'
DC
DC
DC
12
12
12
N
1
3.21
0.50
119.90
123.11
B
B
B
C2
N3
C4
DC
DC
DC
12
12
12
N
1
-3.22
0.40
121.90
118.68
B
B
B
N3
C4
C5
DC
DC
DC
12
12
12
N
1
4.10
0.60
118.90
123.00
B
B
B
N1
C2
O2
DC
DC
DC
12
12
12
N
1
4.28
0.60
118.60
122.88
B
B
B
C6
N1
C2
DA
DA
DA
13
13
13
N
1
-4.90
0.50
129.30
124.40
B
B
B
N1
C2
N3
DA
DA
DA
13
13
13
N
1
-3.17
0.50
117.70
114.53
B
B
B
C5
C6
N1
DA
DA
DA
13
13
13
N
1
9.92
1.20
110.70
120.62
B
B
B
O5'
P
OP1
DA
DA
DA
14
14
14
N
1
-6.00
0.80
109.40
103.40
B
B
B
O5'
C5'
C4'
DA
DA
DA
14
14
14
N
1
-5.44
0.80
102.40
96.96
B
B
B
C3'
C2'
C1'
DA
DA
DA
14
14
14
N
1
3.90
0.30
108.30
112.20
B
B
B
O4'
C1'
N9
DA
DA
DA
14
14
14
N
1
4.43
0.60
118.60
123.03
B
B
B
C6
N1
C2
DA
DA
DA
14
14
14
N
1
-3.37
0.50
129.30
125.93
B
B
B
N1
C2
N3
DA
DA
DA
14
14
14
N
1
-3.73
0.50
117.70
113.97
B
B
B
C5
C6
N1
DA
DA
DA
14
14
14
N
1
9.03
1.20
119.70
128.73
B
B
B
C3'
O3'
P
DA
DA
DG
14
14
15
Y
1
10.81
1.10
110.50
121.31
B
B
B
O3'
P
OP2
DA
DG
DG
14
15
15
Y
1
4.34
0.30
108.30
112.64
B
B
B
O4'
C1'
N9
DG
DG
DG
15
15
15
N
1
-4.20
0.60
125.10
120.90
B
B
B
C6
N1
C2
DG
DG
DG
15
15
15
N
1
3.72
0.50
111.50
115.22
B
B
B
C5
C6
N1
DG
DG
DG
15
15
15
N
1
-5.55
0.80
109.40
103.85
B
B
B
O5'
C5'
C4'
DC
DC
DC
16
16
16
N
1
7.77
1.20
119.70
127.47
B
B
B
C3'
O3'
P
DC
DC
DT
16
16
17
Y
1
-4.96
0.80
109.40
104.44
B
B
B
O5'
C5'
C4'
DT
DT
DT
17
17
17
N
1
-6.10
0.70
108.00
101.90
B
B
B
O4'
C1'
N1
DT
DT
DT
17
17
17
N
1
-4.52
0.60
127.20
122.68
B
B
B
C2
N3
C4
DT
DT
DT
17
17
17
N
1
4.39
0.60
115.20
119.59
B
B
B
N3
C4
C5
DT
DT
DT
17
17
17
N
1
7.42
1.20
119.70
127.12
B
B
B
C3'
O3'
P
DT
DT
DT
17
17
18
Y
1
-5.85
0.80
109.40
103.55
B
B
B
O5'
C5'
C4'
DT
DT
DT
18
18
18
N
1
-5.52
0.60
127.20
121.68
B
B
B
C2
N3
C4
DT
DT
DT
18
18
18
N
1
5.39
0.60
115.20
120.59
B
B
B
N3
C4
C5
DT
DT
DT
18
18
18
N
1
-3.73
0.60
119.90
116.17
B
B
B
N3
C4
O4
DT
DT
DT
18
18
18
N
1
-5.07
0.70
108.00
102.93
B
B
B
O4'
C1'
N9
DG
DG
DG
19
19
19
N
1
-5.04
0.80
109.40
104.36
B
B
B
O5'
C5'
C4'
DG
DG
DG
20
20
20
N
1
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
1
-3.70
0.60
125.10
121.40
B
B
B
C6
N1
C2
DG
DG
DG
20
20
20
N
1
3.62
0.50
111.50
115.12
B
B
B
C5
C6
N1
DG
DG
DG
20
20
20
N
1
-4.27
0.60
128.60
124.33
B
B
B
C5
C6
O6
DG
DG
DG
20
20
20
N
1
A
A
O3'
C3'
DC
DC
2
2
-0.038
0.006
1.419
1.381
N
1
A
A
O4'
C1'
DG
DG
9
9
0.071
0.011
1.420
1.491
N
1
A
A
O4'
C4'
DG
DG
9
9
-0.070
0.010
1.446
1.376
N
1
B
B
O4'
C4'
DC
DC
16
16
-0.063
0.010
1.446
1.383
N
1
B
B
N3
C4
DC
DC
16
16
0.050
0.007
1.335
1.385
N
1
B
B
C2'
C1'
DG
DG
19
19
-0.070
0.010
1.518
1.448
N
0.1790000
1.900
8.000
4095
1
2.000
TR
isotropic
TR
isotropic
1.900
8.000
62
481
15
404
0
fix
fix
1.900
158D
4165
4095
2.000
1
refinement
NUCLSQ
CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
metalc
2.596
A
CA
21
C
CA
CA
1_555
A
HOH
86
E
O
HOH
1_555
metalc
2.442
A
CA
21
C
CA
CA
1_555
A
HOH
87
E
O
HOH
1_555
metalc
2.526
A
CA
21
C
CA
CA
1_555
A
HOH
88
E
O
HOH
1_555
metalc
2.344
A
CA
21
C
CA
CA
1_555
A
HOH
89
E
O
HOH
1_555
metalc
2.790
A
CA
21
C
CA
CA
1_555
A
HOH
91
E
O
HOH
1_555
metalc
2.483
A
CA
21
C
CA
CA
1_555
B
HOH
85
F
O
HOH
1_555
metalc
2.393
A
CA
21
C
CA
CA
1_555
B
HOH
90
F
O
HOH
1_555
metalc
2.757
A
HOH
92
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
metalc
2.580
A
HOH
97
E
O
HOH
1_555
B
CA
22
D
CA
CA
1_555
metalc
2.511
B
CA
22
D
CA
CA
1_555
B
HOH
93
F
O
HOH
1_555
metalc
2.711
B
CA
22
D
CA
CA
1_555
B
HOH
94
F
O
HOH
1_555
metalc
2.565
B
CA
22
D
CA
CA
1_555
B
HOH
95
F
O
HOH
1_555
metalc
2.586
B
CA
22
D
CA
CA
1_555
B
HOH
96
F
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
20
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
20
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
20
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
19
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
19
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
19
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
18
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
18
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
17
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
17
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
16
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
16
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
16
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
15
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
15
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
15
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
14
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
14
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
13
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
13
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
12
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
12
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
12
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
11
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
11
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
11
B
N4
DC
1
1_555
DNA
B-DNA, DOUBLE HELIX, DNA
158D
PDB
1
158D
1
10
158D
1
10
158D
A
1
1
10
11
20
158D
11
20
158D
B
1
1
10
BINDING SITE FOR RESIDUE CA A 21
A
CA
21
Software
7
BINDING SITE FOR RESIDUE CA B 22
B
CA
22
Software
6
A
HOH
86
E
HOH
7
1_555
A
HOH
87
E
HOH
7
1_555
A
HOH
88
E
HOH
7
1_555
A
HOH
89
E
HOH
7
1_555
A
HOH
91
E
HOH
7
1_555
B
HOH
85
F
HOH
7
1_555
B
HOH
90
F
HOH
7
1_555
A
HOH
92
E
HOH
6
1_555
A
HOH
97
E
HOH
6
1_555
B
HOH
93
F
HOH
6
1_555
B
HOH
94
F
HOH
6
1_555
B
HOH
95
F
HOH
6
1_555
B
HOH
96
F
HOH
6
1_555
168
P 6