0.040502 0.000000 0.000000 0.000000 0.024795 0.000000 0.000000 0.000000 0.015044 0.00000 0.00000 0.00000 Nunn, C.M. Jenkins, T.C. Neidle, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 24.690 40.330 66.470 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C18 H22 N4 O3 342.392 1,5-DI(4-AMIDINOPHENOXY)-3-OXA-PENTANE non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H Y 147 N C Y 148 N C Y 149 N C Y 150 N C Y 151 N C Y 152 N C N 153 N C N 154 N C N 155 N C Y 156 N C Y 157 N C Y 158 N C Y 159 N C Y 160 N C Y 161 N C N 162 N C N 163 N C N 164 N C N 165 N N N 166 N N N 167 N N N 168 N N N 169 N O N 170 N O N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing Y 152 N doub Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing Y 161 N doub N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing Y 173 N doub Y 174 N sing N 175 N sing Y 176 N sing N 177 N sing Y 178 N doub N 179 N sing Y 180 N sing N 181 N sing Y 182 N doub N 183 N sing N 184 N sing N 185 E doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing IX Eur.J.Biochem. EJBCAI 0262 0014-2956 226 953 961 10.1111/j.1432-1033.1994.00953.x 7813486 Crystal structure of gamma-oxapentamidine complexed with d(CGCGAATTCGCG)2. The effects of drug structural change on DNA minor-groove recognition. 1994 10.2210/pdb166d/pdb pdb_0000166d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 287.00 1 AREA DETECTOR XENTRONICS x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE 3663.392 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 2 syn polymer 342.392 1,5-DI(4-AMIDINOPHENOXY)-3-OXA-PENTANE 1 syn non-polymer 18.015 water 73 nat water no no (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG) CGCGAATTCGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 2.26 45.54 VAPOR DIFFUSION, SITTING DROP 7.00 pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 286.00K 286.00 WATER 1 MPD 1 MGCL2 1 NA CACODYLATE 1 WATER 2 MPD 2 8.950 1 19 A 1 B 24 -1.197 A_DC1:DG24_B 1 -11.784 0.115 -0.124 -0.107 -2.550 1 19 A 2 B 23 -6.523 A_DG2:DC23_B 2 -12.619 -0.322 0.227 -0.375 -3.915 1 19 A 3 B 22 1.618 A_DC3:DG22_B 3 -6.686 0.179 -0.009 -0.305 9.471 1 19 A 4 B 21 -0.747 A_DG4:DC21_B 4 -9.558 -0.126 0.169 -0.234 1.308 1 20 A 5 B 20 -0.088 A_DA5:DT20_B 5 -15.344 0.126 -0.277 -0.166 1.299 1 20 A 6 B 19 6.540 A_DA6:DT19_B 6 -18.727 0.140 0.062 -0.011 0.635 1 20 A 7 B 18 2.184 A_DT7:DA18_B 7 -18.515 0.033 0.161 -0.171 0.159 1 20 A 8 B 17 1.703 A_DT8:DA17_B 8 -14.541 -0.188 -0.065 -0.186 -5.886 1 19 A 9 B 16 -1.925 A_DC9:DG16_B 9 -14.246 -0.084 -0.075 -0.148 4.002 1 19 A 10 B 15 -2.868 A_DG10:DC15_B 10 -4.018 -0.102 0.362 -0.306 -1.689 1 19 A 11 B 14 -4.472 A_DC11:DG14_B 11 -19.804 0.112 0.696 -0.274 2.659 1 19 A 12 B 13 -8.169 A_DG12:DC13_B 12 12.535 -0.245 -0.077 -0.293 3.700 39.046 A A 1 2 9.933 B B 24 23 3.686 6.601 -0.439 0.236 AA_DC1DG2:DC23DG24_BB 1 -3.488 5.248 38.353 -0.554 0.177 3.437 38.818 A A 2 3 -8.077 B B 23 22 3.482 -5.348 0.695 0.414 AA_DG2DC3:DG22DC23_BB 2 2.875 -4.342 38.358 1.317 -0.673 3.206 28.471 A A 3 4 18.026 B B 22 21 3.085 8.728 -0.122 0.881 AA_DC3DG4:DC21DG22_BB 3 0.170 -0.351 27.126 -0.178 0.286 3.486 39.234 A A 4 5 7.375 B B 21 20 3.539 4.937 -0.255 -0.034 AA_DG4DA5:DT20DC21_BB 4 2.515 -3.758 38.856 -0.687 0.703 3.141 36.319 A A 5 6 5.672 B B 20 19 3.219 3.525 0.239 -0.285 AA_DA5DA6:DT19DT20_BB 5 -3.549 5.711 35.985 -0.938 -0.867 3.332 31.126 A A 6 7 -4.869 B B 19 18 3.299 -2.610 0.034 -0.538 AA_DA6DT7:DA18DT19_BB 6 0.129 -0.240 31.019 -0.497 -0.038 3.226 34.520 A A 7 8 3.683 B B 18 17 3.282 2.180 -0.144 -0.259 AA_DT7DT8:DA17DA18_BB 7 3.770 -6.369 34.252 -0.774 0.826 3.387 40.109 A A 8 9 -1.280 B B 17 16 3.392 -0.878 -0.131 0.236 AA_DT8DC9:DG16DA17_BB 8 -0.491 0.716 40.097 0.448 0.133 3.391 32.497 A A 9 10 5.907 B B 16 15 3.366 3.291 0.267 1.045 AA_DC9DG10:DC15DG16_BB 9 -4.253 7.633 32.061 1.269 -1.251 3.524 42.632 A A 10 11 -17.585 B B 15 14 3.636 -12.570 -1.331 0.389 AA_DG10DC11:DG14DC15_BB 10 -6.084 8.512 40.381 1.962 1.140 3.537 36.501 A A 11 12 -14.429 B B 14 13 3.507 -8.874 1.011 0.025 AA_DC11DG12:DC13DG14_BB 11 8.426 -13.700 34.454 1.403 -0.320 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1994-10-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1994-03-17 REL REL PET 1,5-DI(4-AMIDINOPHENOXY)-3-OXA-PENTANE HOH water PET 25 2 PET PET 25 B HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 30 3 HOH HOH 30 A HOH 40 3 HOH HOH 40 A HOH 43 3 HOH HOH 43 A HOH 44 3 HOH HOH 44 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 49 3 HOH HOH 49 A HOH 50 3 HOH HOH 50 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 56 3 HOH HOH 56 A HOH 57 3 HOH HOH 57 A HOH 59 3 HOH HOH 59 A HOH 61 3 HOH HOH 61 A HOH 62 3 HOH HOH 62 A HOH 68 3 HOH HOH 68 A HOH 74 3 HOH HOH 74 A HOH 78 3 HOH HOH 78 A HOH 79 3 HOH HOH 79 A HOH 83 3 HOH HOH 83 A HOH 85 3 HOH HOH 85 A HOH 86 3 HOH HOH 86 A HOH 87 3 HOH HOH 87 A HOH 88 3 HOH HOH 88 A HOH 90 3 HOH HOH 90 A HOH 91 3 HOH HOH 91 A HOH 92 3 HOH HOH 92 A HOH 93 3 HOH HOH 93 A HOH 97 3 HOH HOH 97 A HOH 98 3 HOH HOH 98 A HOH 28 3 HOH HOH 28 B HOH 29 3 HOH HOH 29 B HOH 31 3 HOH HOH 31 B HOH 32 3 HOH HOH 32 B HOH 33 3 HOH HOH 33 B HOH 34 3 HOH HOH 34 B HOH 35 3 HOH HOH 35 B HOH 36 3 HOH HOH 36 B HOH 37 3 HOH HOH 37 B HOH 38 3 HOH HOH 38 B HOH 39 3 HOH HOH 39 B HOH 41 3 HOH HOH 41 B HOH 42 3 HOH HOH 42 B HOH 45 3 HOH HOH 45 B HOH 48 3 HOH HOH 48 B HOH 53 3 HOH HOH 53 B HOH 54 3 HOH HOH 54 B HOH 55 3 HOH HOH 55 B HOH 58 3 HOH HOH 58 B HOH 60 3 HOH HOH 60 B HOH 63 3 HOH HOH 63 B HOH 64 3 HOH HOH 64 B HOH 65 3 HOH HOH 65 B HOH 66 3 HOH HOH 66 B HOH 67 3 HOH HOH 67 B HOH 69 3 HOH HOH 69 B HOH 70 3 HOH HOH 70 B HOH 71 3 HOH HOH 71 B HOH 72 3 HOH HOH 72 B HOH 73 3 HOH HOH 73 B HOH 75 3 HOH HOH 75 B HOH 76 3 HOH HOH 76 B HOH 77 3 HOH HOH 77 B HOH 80 3 HOH HOH 80 B HOH 81 3 HOH HOH 81 B HOH 82 3 HOH HOH 82 B HOH 84 3 HOH HOH 84 B HOH 89 3 HOH HOH 89 B HOH 94 3 HOH HOH 94 B HOH 95 3 HOH HOH 95 B HOH 96 3 HOH HOH 96 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A T 8 n 8 DT 8 A C 9 n 9 DC 9 A G 10 n 10 DG 10 A C 11 n 11 DC 11 A G 12 n 12 DG 12 A C 13 n 1 DC 13 B G 14 n 2 DG 14 B C 15 n 3 DC 15 B G 16 n 4 DG 16 B A 17 n 5 DA 17 B A 18 n 6 DA 18 B T 19 n 7 DT 19 B T 20 n 8 DT 20 B C 21 n 9 DC 21 B G 22 n 10 DG 22 B C 23 n 11 DC 23 B G 24 n 12 DG 24 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -4.72 0.40 104.50 99.78 A A A O4' C4' C3' DC DC DC 1 1 1 N 1 -12.54 1.80 114.10 101.56 A A A C5' C4' C3' DC DC DC 1 1 1 N 1 6.89 1.10 109.80 116.69 A A A C5' C4' O4' DC DC DC 1 1 1 N 1 1.91 0.30 108.30 110.21 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 3.94 0.60 119.90 123.84 A A A N1 C6 O6 DG DG DG 2 2 2 N 1 -3.87 0.60 128.60 124.73 A A A C5 C6 O6 DG DG DG 2 2 2 N 1 8.15 1.20 119.70 127.85 A A A C3' O3' P DG DG DC 2 2 3 Y 1 -13.48 1.60 120.90 107.42 A A A P O5' C5' DC DC DC 3 3 3 N 1 7.30 1.20 102.50 109.80 A A A C3' C2' C1' DC DC DC 3 3 3 N 1 3.38 0.50 119.90 123.28 A A A C2 N3 C4 DC DC DC 3 3 3 N 1 -2.96 0.40 121.90 118.94 A A A N3 C4 C5 DC DC DC 3 3 3 N 1 -11.44 1.20 119.70 108.26 A A A C3' O3' P DC DC DG 3 3 4 Y 1 -9.74 1.60 120.90 111.16 A A A P O5' C5' DG DG DG 4 4 4 N 1 5.30 0.30 108.30 113.60 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -3.07 0.50 104.30 101.23 A A A C5 N7 C8 DG DG DG 4 4 4 N 1 6.15 0.90 116.20 122.35 A A A N1 C2 N2 DG DG DG 4 4 4 N 1 -5.75 0.60 128.60 122.85 A A A C5 C6 O6 DG DG DG 4 4 4 N 1 -5.36 0.80 105.90 100.54 A A A O4' C1' C2' DA DA DA 5 5 5 N 1 3.85 0.30 108.30 112.15 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -3.32 0.40 104.50 101.18 A A A O4' C4' C3' DA DA DA 6 6 6 N 1 -5.28 0.80 105.90 100.62 A A A O4' C1' C2' DA DA DA 6 6 6 N 1 -12.12 1.60 120.90 108.78 A A A P O5' C5' DT DT DT 7 7 7 N 1 1.97 0.30 108.30 110.27 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 -4.90 0.60 115.20 110.30 A A A N3 C4 C5 DT DT DT 7 7 7 N 1 6.11 0.60 118.00 124.11 A A A C4 C5 C6 DT DT DT 7 7 7 N 1 4.16 0.60 119.90 124.06 A A A N3 C4 O4 DT DT DT 7 7 7 N 1 -4.60 0.60 119.00 114.40 A A A C4 C5 C7 DT DT DT 7 7 7 N 1 -9.99 1.60 120.90 110.91 A A A P O5' C5' DT DT DT 8 8 8 N 1 -6.99 0.80 105.90 98.91 A A A O4' C1' C2' DT DT DT 8 8 8 N 1 4.39 0.60 114.60 118.99 A A A N1 C2 N3 DT DT DT 8 8 8 N 1 4.70 0.60 118.00 122.70 A A A C4 C5 C6 DT DT DT 8 8 8 N 1 -3.89 0.60 123.70 119.81 A A A C5 C6 N1 DT DT DT 8 8 8 N 1 -6.09 0.60 122.30 116.21 A A A N3 C2 O2 DT DT DT 8 8 8 N 1 -4.14 0.60 122.90 118.76 A A A C6 C5 C7 DT DT DT 8 8 8 N 1 3.86 0.30 108.30 112.16 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 3.67 0.50 119.90 123.57 A A A C2 N3 C4 DC DC DC 9 9 9 N 1 -2.57 0.40 121.90 119.33 A A A N3 C4 C5 DC DC DC 9 9 9 N 1 6.36 0.60 118.90 125.26 A A A N1 C2 O2 DC DC DC 9 9 9 N 1 -5.60 0.70 121.90 116.30 A A A N3 C2 O2 DC DC DC 9 9 9 N 1 5.35 0.70 120.20 125.55 A A A C5 C4 N4 DC DC DC 9 9 9 N 1 -5.22 0.80 102.40 97.18 A A A C3' C2' C1' DG DG DG 10 10 10 N 1 -9.86 1.60 120.90 111.04 A A A P O5' C5' DC DC DC 11 11 11 N 1 4.09 0.60 118.90 122.99 A A A N1 C2 O2 DC DC DC 11 11 11 N 1 -5.07 0.70 121.90 116.83 A A A N3 C2 O2 DC DC DC 11 11 11 N 1 -4.19 0.40 104.50 100.31 A A A O4' C4' C3' DG DG DG 12 12 12 N 1 5.80 0.30 108.30 114.10 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 -2.41 0.40 104.50 102.09 B B B O4' C4' C3' DC DC DC 13 13 13 N 1 3.98 0.60 118.90 122.88 B B B N1 C2 O2 DC DC DC 13 13 13 N 1 3.69 0.30 108.30 111.99 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 -3.99 0.40 104.50 100.51 B B B O4' C4' C3' DC DC DC 15 15 15 N 1 4.87 0.70 110.30 115.17 B B B C1' O4' C4' DC DC DC 15 15 15 N 1 -7.40 0.80 105.90 98.50 B B B O4' C1' C2' DC DC DC 15 15 15 N 1 8.78 0.30 108.30 117.08 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 5.69 0.50 119.90 125.59 B B B C2 N3 C4 DC DC DC 15 15 15 N 1 -5.39 0.40 121.90 116.51 B B B N3 C4 C5 DC DC DC 15 15 15 N 1 3.33 0.50 121.00 124.33 B B B C5 C6 N1 DC DC DC 15 15 15 N 1 6.36 0.70 118.00 124.36 B B B N3 C4 N4 DC DC DC 15 15 15 N 1 2.65 0.30 108.30 110.95 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 5.84 0.70 110.30 116.14 B B B C1' O4' C4' DA DA DA 17 17 17 N 1 1.92 0.30 108.30 110.22 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 -5.96 0.40 104.50 98.54 B B B O4' C4' C3' DA DA DA 18 18 18 N 1 6.04 0.70 110.30 116.34 B B B C1' O4' C4' DA DA DA 18 18 18 N 1 -5.46 0.80 105.90 100.44 B B B O4' C1' C2' DA DA DA 18 18 18 N 1 3.55 0.30 108.30 111.85 B B B O4' C1' N9 DA DA DA 18 18 18 N 1 -17.61 1.60 120.90 103.29 B B B P O5' C5' DT DT DT 19 19 19 N 1 8.89 0.30 108.30 117.19 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 -4.34 0.60 115.20 110.86 B B B N3 C4 C5 DT DT DT 19 19 19 N 1 4.65 0.60 118.00 122.65 B B B C4 C5 C6 DT DT DT 19 19 19 N 1 -7.57 0.60 122.90 115.33 B B B C6 C5 C7 DT DT DT 19 19 19 N 1 -10.84 1.60 120.90 110.06 B B B P O5' C5' DT DT DT 20 20 20 N 1 -4.01 0.40 104.50 100.49 B B B O4' C4' C3' DT DT DT 20 20 20 N 1 -5.47 0.80 105.90 100.43 B B B O4' C1' C2' DT DT DT 20 20 20 N 1 -4.17 0.60 127.20 123.03 B B B C2 N3 C4 DT DT DT 20 20 20 N 1 4.11 0.60 118.00 122.11 B B B C4 C5 C6 DT DT DT 20 20 20 N 1 -3.84 0.60 123.70 119.86 B B B C5 C6 N1 DT DT DT 20 20 20 N 1 -4.38 0.60 122.90 118.52 B B B C6 C5 C7 DT DT DT 20 20 20 N 1 5.25 0.60 118.90 124.15 B B B N1 C2 O2 DC DC DC 21 21 21 N 1 8.52 0.30 108.30 116.82 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 -12.60 1.90 104.00 91.40 B B B O3' P O5' DG DC DC 22 23 23 Y 1 4.10 0.60 106.00 110.10 B B B O4' C4' C3' DC DC DC 23 23 23 N 1 -4.97 0.70 102.20 97.23 B B B C4' C3' C2' DC DC DC 23 23 23 N 1 8.43 0.30 108.30 116.73 B B B O4' C1' N1 DC DC DC 23 23 23 N 1 -9.74 1.60 120.90 111.16 B B B P O5' C5' DG DG DG 24 24 24 N 1 -13.77 1.90 112.60 98.83 B B B N9 C1' C2' DG DG DG 24 24 24 N 1 11.53 0.30 108.30 119.83 B B B O4' C1' N9 DG DG DG 24 24 24 N 1 A A C2' C1' DC DC 1 1 -0.061 0.010 1.518 1.457 N 1 A A C5' C4' DC DC 3 3 -0.080 0.011 1.509 1.429 N 1 A A N1 C2 DC DC 3 3 -0.068 0.010 1.397 1.329 N 1 A A N3 C4 DA DA 5 5 0.037 0.006 1.344 1.381 N 1 A A C5 N7 DA DA 6 6 0.043 0.006 1.388 1.431 N 1 A A N9 C4 DA DA 6 6 0.057 0.006 1.374 1.431 N 1 A A P O5' DT DT 7 7 -0.063 0.010 1.593 1.530 N 1 A A C2' C1' DT DT 7 7 -0.064 0.010 1.518 1.454 N 1 A A C6 N1 DT DT 7 7 -0.045 0.007 1.378 1.333 N 1 A A P O5' DC DC 9 9 -0.069 0.010 1.593 1.524 N 1 A A N1 C6 DC DC 11 11 -0.044 0.006 1.367 1.323 N 1 A A P O5' DG DG 12 12 0.069 0.010 1.593 1.662 N 1 A A N3 C4 DG DG 12 12 0.044 0.007 1.350 1.394 N 1 B B C5' C4' DC DC 13 13 0.062 0.007 1.512 1.574 N 1 B B N7 C8 DG DG 14 14 -0.039 0.006 1.305 1.266 N 1 B B O3' C3' DC DC 15 15 -0.049 0.006 1.419 1.370 N 1 B B C5 N7 DG DG 16 16 -0.039 0.006 1.388 1.349 N 1 B B C2' C1' DT DT 20 20 -0.072 0.010 1.518 1.446 N 1 B B O3' C3' DG DG 22 22 -0.040 0.006 1.419 1.379 N 1 B B C6 N1 DG DG 22 22 -0.047 0.007 1.391 1.344 N 1 B B C2 N2 DG DG 22 22 -0.060 0.010 1.341 1.281 N 1 B B C3' C2' DG DG 24 24 -0.050 0.008 1.516 1.466 N 0.1980000 0.1890000 0.1890000 2.200 8.000 3184 97.400 1 2.000 TR isotropic TR isotropic 2.200 8.000 73 584 25 486 0 fix fix 2.100 166D 9633 3846 1 refinement X-PLOR DRUG-DNA MINOR GROOVE RECOGNITION: CRYSTAL STRUCTURE OF GAMMA-OXAPENTAMIDINE COMPLEXED WITH D(CGCGAATTCGCG)2 1 N N 1 N N 2 N N 3 N N 3 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 21 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 21 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 21 B N4 DC 9 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 16 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 16 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 16 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 166D PDB 1 166D 1 12 166D 1 12 166D A 1 1 12 13 24 166D 13 24 166D B 1 1 12 BINDING SITE FOR RESIDUE PET B 25 B PET 25 Software 13 A DA 5 A DA 5 13 1_555 A DA 6 A DA 6 13 1_555 A DT 7 A DT 7 13 1_555 A DT 8 A DT 8 13 1_555 A DC 9 A DC 9 13 1_555 B DA 18 B DA 6 13 1_555 B DT 19 B DT 7 13 1_555 B DT 20 B DT 8 13 1_555 B DC 21 B DC 9 13 1_555 B HOH 45 E HOH 13 1_555 B HOH 69 E HOH 13 1_555 B HOH 81 E HOH 13 1_555 B HOH 82 E HOH 13 1_555 19 P 21 21 21