0.014176 0.008185 0.000000 0.000000 0.016369 0.000000 0.000000 0.000000 0.018762 0.00000 0.00000 0.00000 Kamitori, S. Takusagawa, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 36 90.00 90.00 120.00 70.540 70.540 53.300 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 116 4154 4165 -1 Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of d(GAAGCTTC)2-Actinomycin D Complexes and Its Host DNA 1994 10.2210/pdb172d/pdb pdb_0000172d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 123.00 1 DIFFRACTOMETER RIGAKU AFC-5R x-ray 1 1.0 2426.617 DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') 4 syn polymer 18.015 water 140 nat water no no (DG)(DA)(DA)(DG)(DC)(DT)(DT)(DC) GAAGCTTC A,B,C,D polydeoxyribonucleotide n n n n n n n n 2.63 53.22 VAPOR DIFFUSION 7.00 pH 7.00, VAPOR DIFFUSION, temperature 277.00K 277.00 WATER 1 MPD 1 MGCL2 1 NA CACODYLATE 1 SPERMINE_HCL 1 WATER 2 MPD 2 0.720 1 19 A 1 B 16 -3.281 A_DG1:DC16_B 1 2.842 -0.071 -0.003 -0.166 5.993 1 20 A 2 B 15 14.329 A_DA2:DT15_B 2 -7.854 -0.553 -0.052 -0.180 -7.931 1 20 A 3 B 14 9.833 A_DA3:DT14_B 3 -0.483 -0.390 -0.565 -0.172 -10.742 1 19 A 4 B 13 2.200 A_DG4:DC13_B 4 -2.040 -0.279 -0.022 -0.174 17.202 1 19 A 5 B 12 4.999 A_DC5:DG12_B 5 -5.149 -0.078 -0.346 0.041 11.993 1 20 A 6 B 11 -0.098 A_DT6:DA11_B 6 -4.016 0.041 -0.404 -0.111 -2.944 1 20 A 7 B 10 0.429 A_DT7:DA10_B 7 1.034 0.068 0.060 -0.108 19.867 1 19 A 8 B 9 -0.794 A_DC8:DG9_B 8 -6.449 -0.265 -0.144 -0.087 -11.719 1 19 C 17 D 32 2.702 C_DG17:DC32_D 9 -4.441 -0.259 -0.118 -0.158 -5.244 1 20 C 18 D 31 -7.413 C_DA18:DT31_D 10 -1.927 0.274 -0.193 -0.118 -21.248 1 20 C 19 D 30 -20.474 C_DA19:DT30_D 11 -13.832 0.270 -0.776 0.052 -18.526 1 19 C 20 D 29 -5.609 C_DG20:DC29_D 12 -3.947 -0.286 -0.282 -0.140 -3.137 1 19 C 21 D 28 -5.937 C_DC21:DG28_D 13 0.607 0.089 -0.235 -0.194 12.827 1 20 C 22 D 27 5.793 C_DT22:DA27_D 14 -4.366 0.029 -0.326 -0.033 15.116 1 20 C 23 D 26 11.887 C_DT23:DA26_D 15 -2.237 0.192 -0.475 -0.081 43.062 1 19 C 24 D 25 6.195 C_DC24:DG25_D 16 -8.951 0.268 -1.094 0.119 2.223 30.866 A A 1 2 27.494 B B 16 15 3.135 14.021 1.199 -0.658 AA_DG1DA2:DT15DC16_BB 1 -5.945 11.657 26.928 -3.630 -3.268 2.510 44.501 A A 2 3 32.629 B B 15 14 3.349 23.515 -0.901 -0.874 AA_DA2DA3:DT14DT15_BB 2 -4.753 6.595 37.760 -3.278 0.760 3.582 31.007 A A 3 4 -4.161 B B 14 13 3.262 -2.210 -1.414 -1.740 AA_DA3DG4:DC13DT14_BB 3 -5.924 11.155 30.371 -2.805 1.438 2.465 22.304 A A 4 5 23.219 B B 13 12 2.590 8.722 0.607 0.059 AA_DG4DC5:DG12DC13_BB 4 2.792 -7.432 20.359 -2.490 -0.723 3.776 33.970 A A 5 6 -4.704 B B 12 11 3.691 -2.744 -0.716 -0.759 AA_DC5DT6:DA11DG12_BB 5 -2.207 3.784 33.792 -0.796 0.821 2.677 41.752 A A 6 7 37.875 B B 11 10 3.822 25.271 -0.629 -0.731 AA_DT6DT7:DA10DA11_BB 6 -1.064 1.594 33.494 -3.989 0.758 3.363 26.542 A A 7 8 -12.706 B B 10 9 2.830 -5.764 -1.542 -1.830 AA_DT7DC8:DG9DA10_BB 7 -4.267 9.407 25.572 -2.519 2.272 3.226 27.678 C C 17 18 -3.835 D D 32 31 3.146 -1.833 -0.547 -1.509 CC_DG17DA18:DT31DC32_DD 8 0.535 -1.120 27.613 -2.722 1.271 1.753 36.129 C C 18 19 30.756 D D 31 30 3.903 18.246 -0.927 -3.384 CC_DA18DA19:DT30DT31_DD 9 -0.950 1.601 31.303 -7.858 1.369 2.598 33.494 C C 19 20 12.902 D D 30 29 3.133 7.377 0.324 -2.126 CC_DA19DG20:DC29DT30_DD 10 -0.684 1.196 32.687 -4.766 -0.662 2.365 26.301 C C 20 21 23.488 D D 29 28 3.144 10.398 1.027 -1.502 CC_DG20DC21:DG28DC29_DD 11 1.589 -3.589 24.140 -5.759 -1.882 3.031 37.911 C C 21 22 12.743 D D 28 27 3.176 8.217 1.283 -0.191 CC_DC21DT22:DA27DG28_DD 12 -1.022 1.586 37.028 -1.304 -2.101 3.543 29.427 C C 22 23 1.002 D D 27 26 3.556 0.508 -0.360 -1.746 CC_DT22DT23:DA26DA27_DD 13 -2.147 4.230 29.346 -3.556 0.208 3.061 22.948 C C 23 24 -3.912 D D 26 25 2.964 -1.525 0.804 -0.083 CC_DT23DC24:DG25DA26_DD 14 7.750 -19.876 21.563 0.305 0.585 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Other Data collection Database references 1 0 1994-10-15 1 1 2008-05-23 1 2 2011-07-13 1 3 2012-02-15 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1994-04-18 REL HOH water HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 51 2 HOH HOH 51 A HOH 54 2 HOH HOH 54 A HOH 58 2 HOH HOH 58 A HOH 66 2 HOH HOH 66 A HOH 75 2 HOH HOH 75 A HOH 86 2 HOH HOH 86 A HOH 91 2 HOH HOH 91 A HOH 96 2 HOH HOH 96 A HOH 99 2 HOH HOH 99 A HOH 100 2 HOH HOH 100 A HOH 106 2 HOH HOH 106 A HOH 107 2 HOH HOH 107 A HOH 116 2 HOH HOH 116 A HOH 119 2 HOH HOH 119 A HOH 120 2 HOH HOH 120 A HOH 125 2 HOH HOH 125 A HOH 126 2 HOH HOH 126 A HOH 128 2 HOH HOH 128 A HOH 129 2 HOH HOH 129 A HOH 138 2 HOH HOH 138 A HOH 153 2 HOH HOH 153 A HOH 156 2 HOH HOH 156 A HOH 157 2 HOH HOH 157 A HOH 158 2 HOH HOH 158 A HOH 159 2 HOH HOH 159 A HOH 164 2 HOH HOH 164 A HOH 47 2 HOH HOH 47 B HOH 50 2 HOH HOH 50 B HOH 57 2 HOH HOH 57 B HOH 59 2 HOH HOH 59 B HOH 60 2 HOH HOH 60 B HOH 61 2 HOH HOH 61 B HOH 64 2 HOH HOH 64 B HOH 65 2 HOH HOH 65 B HOH 68 2 HOH HOH 68 B HOH 70 2 HOH HOH 70 B HOH 74 2 HOH HOH 74 B HOH 76 2 HOH HOH 76 B HOH 77 2 HOH HOH 77 B HOH 78 2 HOH HOH 78 B HOH 82 2 HOH HOH 82 B HOH 88 2 HOH HOH 88 B HOH 94 2 HOH HOH 94 B HOH 97 2 HOH HOH 97 B HOH 110 2 HOH HOH 110 B HOH 112 2 HOH HOH 112 B HOH 113 2 HOH HOH 113 B HOH 121 2 HOH HOH 121 B HOH 130 2 HOH HOH 130 B HOH 131 2 HOH HOH 131 B HOH 132 2 HOH HOH 132 B HOH 137 2 HOH HOH 137 B HOH 139 2 HOH HOH 139 B HOH 146 2 HOH HOH 146 B HOH 147 2 HOH HOH 147 B HOH 149 2 HOH HOH 149 B HOH 155 2 HOH HOH 155 B HOH 161 2 HOH HOH 161 B HOH 162 2 HOH HOH 162 B HOH 163 2 HOH HOH 163 B HOH 171 2 HOH HOH 171 B HOH 33 2 HOH HOH 33 C HOH 38 2 HOH HOH 38 C HOH 39 2 HOH HOH 39 C HOH 40 2 HOH HOH 40 C HOH 55 2 HOH HOH 55 C HOH 56 2 HOH HOH 56 C HOH 63 2 HOH HOH 63 C HOH 67 2 HOH HOH 67 C HOH 69 2 HOH HOH 69 C HOH 73 2 HOH HOH 73 C HOH 80 2 HOH HOH 80 C HOH 81 2 HOH HOH 81 C HOH 84 2 HOH HOH 84 C HOH 85 2 HOH HOH 85 C HOH 87 2 HOH HOH 87 C HOH 89 2 HOH HOH 89 C HOH 92 2 HOH HOH 92 C HOH 104 2 HOH HOH 104 C HOH 105 2 HOH HOH 105 C HOH 108 2 HOH HOH 108 C HOH 109 2 HOH HOH 109 C HOH 114 2 HOH HOH 114 C HOH 122 2 HOH HOH 122 C HOH 124 2 HOH HOH 124 C HOH 127 2 HOH HOH 127 C HOH 145 2 HOH HOH 145 C HOH 150 2 HOH HOH 150 C HOH 152 2 HOH HOH 152 C HOH 160 2 HOH HOH 160 C HOH 165 2 HOH HOH 165 C HOH 166 2 HOH HOH 166 C HOH 167 2 HOH HOH 167 C HOH 48 2 HOH HOH 48 D HOH 49 2 HOH HOH 49 D HOH 52 2 HOH HOH 52 D HOH 53 2 HOH HOH 53 D HOH 62 2 HOH HOH 62 D HOH 71 2 HOH HOH 71 D HOH 72 2 HOH HOH 72 D HOH 79 2 HOH HOH 79 D HOH 83 2 HOH HOH 83 D HOH 90 2 HOH HOH 90 D HOH 93 2 HOH HOH 93 D HOH 95 2 HOH HOH 95 D HOH 98 2 HOH HOH 98 D HOH 101 2 HOH HOH 101 D HOH 102 2 HOH HOH 102 D HOH 103 2 HOH HOH 103 D HOH 111 2 HOH HOH 111 D HOH 115 2 HOH HOH 115 D HOH 117 2 HOH HOH 117 D HOH 118 2 HOH HOH 118 D HOH 123 2 HOH HOH 123 D HOH 133 2 HOH HOH 133 D HOH 134 2 HOH HOH 134 D HOH 135 2 HOH HOH 135 D HOH 136 2 HOH HOH 136 D HOH 140 2 HOH HOH 140 D HOH 141 2 HOH HOH 141 D HOH 142 2 HOH HOH 142 D HOH 143 2 HOH HOH 143 D HOH 144 2 HOH HOH 144 D HOH 148 2 HOH HOH 148 D HOH 151 2 HOH HOH 151 D HOH 154 2 HOH HOH 154 D HOH 168 2 HOH HOH 168 D HOH 169 2 HOH HOH 169 D HOH 170 2 HOH HOH 170 D HOH 172 2 HOH HOH 172 D G 1 n 1 DG 1 A A 2 n 2 DA 2 A A 3 n 3 DA 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A T 6 n 6 DT 6 A T 7 n 7 DT 7 A C 8 n 8 DC 8 A G 9 n 1 DG 9 B A 10 n 2 DA 10 B A 11 n 3 DA 11 B G 12 n 4 DG 12 B C 13 n 5 DC 13 B T 14 n 6 DT 14 B T 15 n 7 DT 15 B C 16 n 8 DC 16 B G 17 n 1 DG 17 C A 18 n 2 DA 18 C A 19 n 3 DA 19 C G 20 n 4 DG 20 C C 21 n 5 DC 21 C T 22 n 6 DT 22 C T 23 n 7 DT 23 C C 24 n 8 DC 24 C G 25 n 1 DG 25 D A 26 n 2 DA 26 D A 27 n 3 DA 27 D G 28 n 4 DG 28 D C 29 n 5 DC 29 D T 30 n 6 DT 30 D T 31 n 7 DT 31 D C 32 n 8 DC 32 D author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -9.73 0.70 102.20 92.47 A A A C4' C3' C2' DG DG DG 1 1 1 N 1 7.68 1.20 119.70 127.38 A A A C3' O3' P DG DG DA 1 1 2 Y 1 6.45 0.30 108.30 114.75 A A A O4' C1' N9 DA DA DA 2 2 2 N 1 7.51 0.60 118.60 126.11 A A A C6 N1 C2 DA DA DA 2 2 2 N 1 -5.84 0.50 117.70 111.86 A A A C5 C6 N1 DA DA DA 2 2 2 N 1 14.25 1.20 119.70 133.95 A A A C3' O3' P DA DA DA 2 2 3 Y 1 14.49 1.90 104.00 118.49 A A A O3' P O5' DA DA DA 2 3 3 Y 1 -8.92 0.90 105.70 96.78 A A A O5' P OP2 DA DA DA 3 3 3 N 1 -5.27 0.80 109.40 104.13 A A A O5' C5' C4' DA DA DA 3 3 3 N 1 4.67 0.60 106.00 110.67 A A A O4' C4' C3' DA DA DA 3 3 3 N 1 11.86 0.30 108.30 120.16 A A A O4' C1' N9 DA DA DA 3 3 3 N 1 5.43 0.60 118.60 124.03 A A A C6 N1 C2 DA DA DA 3 3 3 N 1 -3.25 0.50 117.70 114.45 A A A C5 C6 N1 DA DA DA 3 3 3 N 1 13.95 1.20 119.70 133.65 A A A C3' O3' P DA DA DG 3 3 4 Y 1 5.73 0.60 106.00 111.73 A A A O4' C4' C3' DG DG DG 4 4 4 N 1 -6.66 1.00 110.10 103.44 A A A C1' O4' C4' DG DG DG 4 4 4 N 1 -6.49 0.70 102.20 95.71 A A A C4' C3' C2' DG DG DG 4 4 4 N 1 9.27 1.40 114.30 123.57 A A A N9 C1' C2' DG DG DG 4 4 4 N 1 -5.23 0.70 108.00 102.77 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 7.25 1.20 119.70 126.95 A A A C3' O3' P DG DG DC 4 4 5 Y 1 6.09 0.60 106.00 112.09 A A A O4' C4' C3' DC DC DC 5 5 5 N 1 12.41 2.00 112.30 124.71 A A A C4' C3' O3' DC DC DC 5 5 5 N 1 -6.58 0.70 102.20 95.62 A A A C4' C3' C2' DC DC DC 5 5 5 N 1 18.64 0.30 108.30 126.94 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 -2.59 0.40 121.90 119.31 A A A N3 C4 C5 DC DC DC 5 5 5 N 1 -4.62 0.70 102.20 97.58 A A A C4' C3' C2' DT DT DT 6 6 6 N 1 7.04 0.30 108.30 115.34 A A A O4' C1' N1 DT DT DT 6 6 6 N 1 -3.09 0.50 121.30 118.21 A A A C6 N1 C2 DT DT DT 6 6 6 N 1 4.00 0.60 118.00 122.00 A A A C4 C5 C6 DT DT DT 6 6 6 N 1 -5.34 0.60 122.30 116.96 A A A N3 C2 O2 DT DT DT 6 6 6 N 1 -4.42 0.60 119.00 114.58 A A A C4 C5 C7 DT DT DT 6 6 6 N 1 11.14 1.20 119.70 130.84 A A A C3' O3' P DT DT DT 6 6 7 Y 1 14.81 1.90 104.00 118.81 A A A O3' P O5' DT DT DT 6 7 7 Y 1 -7.67 0.80 105.90 98.23 A A A O4' C1' C2' DT DT DT 7 7 7 N 1 4.45 0.30 108.30 112.75 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 3.96 0.60 119.00 122.96 A A A C4 C5 C7 DT DT DT 7 7 7 N 1 -7.14 0.60 122.90 115.76 A A A C6 C5 C7 DT DT DT 7 7 7 N 1 -9.73 0.80 109.40 99.67 A A A O5' C5' C4' DC DC DC 8 8 8 N 1 17.61 1.60 120.90 138.51 A A A P O5' C5' DC DC DC 8 8 8 N 1 3.10 0.30 108.30 111.40 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 4.20 0.50 119.90 124.10 A A A C2 N3 C4 DC DC DC 8 8 8 N 1 -2.63 0.40 121.90 119.27 A A A N3 C4 C5 DC DC DC 8 8 8 N 1 4.39 0.60 118.90 123.29 A A A N1 C2 O2 DC DC DC 8 8 8 N 1 -6.59 0.80 105.90 99.31 B B B O4' C1' C2' DG DG DG 9 9 9 N 1 7.60 0.30 108.30 115.90 B B B O4' C1' N9 DG DG DG 9 9 9 N 1 -2.99 0.40 106.40 103.41 B B B C8 N9 C4 DG DG DG 9 9 9 N 1 -4.14 0.60 126.00 121.86 B B B N3 C4 N9 DG DG DG 9 9 9 N 1 10.05 1.30 127.00 137.05 B B B C8 N9 C1' DG DG DG 9 9 9 N 1 -7.76 0.70 102.20 94.44 B B B C4' C3' C2' DA DA DA 10 10 10 N 1 2.24 0.30 108.30 110.54 B B B O4' C1' N9 DA DA DA 10 10 10 N 1 4.31 0.60 118.60 122.91 B B B C6 N1 C2 DA DA DA 10 10 10 N 1 -3.03 0.50 129.30 126.27 B B B N1 C2 N3 DA DA DA 10 10 10 N 1 10.21 1.20 119.70 129.91 B B B C3' O3' P DA DA DA 10 10 11 Y 1 -7.09 0.80 109.40 102.31 B B B O5' C5' C4' DA DA DA 11 11 11 N 1 9.80 1.60 120.90 130.70 B B B P O5' C5' DA DA DA 11 11 11 N 1 1.91 0.30 108.30 110.21 B B B O4' C1' N9 DA DA DA 11 11 11 N 1 4.71 0.60 118.60 123.31 B B B C6 N1 C2 DA DA DA 11 11 11 N 1 11.56 1.10 109.80 121.36 B B B C5' C4' O4' DG DG DG 12 12 12 N 1 9.39 1.40 114.30 123.69 B B B N9 C1' C2' DG DG DG 12 12 12 N 1 3.38 0.40 105.40 108.78 B B B N9 C4 C5 DG DG DG 12 12 12 N 1 -4.48 0.70 119.90 115.42 B B B N3 C2 N2 DG DG DG 12 12 12 N 1 -8.57 0.80 109.40 100.83 B B B O5' C5' C4' DC DC DC 13 13 13 N 1 -13.02 0.70 102.20 89.18 B B B C4' C3' C2' DC DC DC 13 13 13 N 1 -5.21 0.80 105.90 100.69 B B B O4' C1' C2' DC DC DC 13 13 13 N 1 19.40 0.30 108.30 127.70 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 15.18 1.20 119.70 134.88 B B B C3' O3' P DC DC DT 13 13 14 Y 1 -4.60 0.70 102.20 97.60 B B B C4' C3' C2' DT DT DT 14 14 14 N 1 4.44 0.60 127.20 131.64 B B B C2 N3 C4 DT DT DT 14 14 14 N 1 -4.82 0.60 122.30 117.48 B B B N3 C2 O2 DT DT DT 14 14 14 N 1 5.84 0.70 124.90 130.74 B B B C5 C4 O4 DT DT DT 14 14 14 N 1 -4.06 0.60 122.90 118.84 B B B C6 C5 C7 DT DT DT 14 14 14 N 1 12.86 1.20 119.70 132.56 B B B C3' O3' P DT DT DT 14 14 15 Y 1 -6.90 0.80 109.40 102.50 B B B O5' C5' C4' DT DT DT 15 15 15 N 1 -8.06 1.00 110.10 102.04 B B B C1' O4' C4' DT DT DT 15 15 15 N 1 13.47 2.00 112.30 125.77 B B B C4' C3' O3' DT DT DT 15 15 15 N 1 -10.21 0.70 102.20 91.99 B B B C4' C3' C2' DT DT DT 15 15 15 N 1 5.79 0.30 108.30 114.09 B B B O4' C1' N1 DT DT DT 15 15 15 N 1 4.73 0.60 127.20 131.93 B B B C2 N3 C4 DT DT DT 15 15 15 N 1 -4.11 0.60 115.20 111.09 B B B N3 C4 C5 DT DT DT 15 15 15 N 1 -5.68 0.60 122.30 116.62 B B B N3 C2 O2 DT DT DT 15 15 15 N 1 -3.63 0.60 119.90 116.27 B B B N3 C4 O4 DT DT DT 15 15 15 N 1 7.73 0.70 124.90 132.63 B B B C5 C4 O4 DT DT DT 15 15 15 N 1 13.16 1.20 119.70 132.86 B B B C3' O3' P DT DT DC 15 15 16 Y 1 15.41 0.30 108.30 123.71 B B B O4' C1' N1 DC DC DC 16 16 16 N 1 -7.48 0.40 104.50 97.02 C C C O4' C4' C3' DG DG DG 17 17 17 N 1 15.09 2.00 112.30 127.39 C C C C4' C3' O3' DG DG DG 17 17 17 N 1 7.55 0.30 108.30 115.85 C C C O4' C1' N9 DG DG DG 17 17 17 N 1 -4.39 0.70 119.90 115.51 C C C N3 C2 N2 DG DG DG 17 17 17 N 1 8.15 1.20 119.70 127.85 C C C C3' O3' P DG DG DA 17 17 18 Y 1 -6.43 0.70 102.20 95.77 C C C C4' C3' C2' DA DA DA 18 18 18 N 1 8.14 0.30 108.30 116.44 C C C O4' C1' N9 DA DA DA 18 18 18 N 1 4.17 0.60 118.60 122.77 C C C C6 N1 C2 DA DA DA 18 18 18 N 1 -2.86 0.40 104.50 101.64 C C C O4' C4' C3' DA DA DA 19 19 19 N 1 12.29 1.10 109.80 122.09 C C C C5' C4' O4' DA DA DA 19 19 19 N 1 15.14 2.00 112.30 127.44 C C C C4' C3' O3' DA DA DA 19 19 19 N 1 -9.74 0.70 102.20 92.46 C C C C4' C3' C2' DA DA DA 19 19 19 N 1 -5.04 0.80 105.90 100.86 C C C O4' C1' C2' DA DA DA 19 19 19 N 1 5.11 0.30 108.30 113.41 C C C O4' C1' N9 DA DA DA 19 19 19 N 1 -5.49 0.60 118.60 113.11 C C C C6 N1 C2 DA DA DA 19 19 19 N 1 3.19 0.50 129.30 132.49 C C C N1 C2 N3 DA DA DA 19 19 19 N 1 3.01 0.50 117.70 120.71 C C C C5 C6 N1 DA DA DA 19 19 19 N 1 -2.85 0.40 105.80 102.95 C C C C8 N9 C4 DA DA DA 19 19 19 N 1 3.75 0.60 118.60 122.35 C C C N1 C6 N6 DA DA DA 19 19 19 N 1 -6.76 0.80 123.70 116.94 C C C C5 C6 N6 DA DA DA 19 19 19 N 1 -8.43 1.20 119.70 111.27 C C C C3' O3' P DA DA DG 19 19 20 Y 1 -5.32 0.40 104.50 99.18 C C C O4' C4' C3' DG DG DG 20 20 20 N 1 -3.65 0.60 130.40 126.75 C C C C6 C5 N7 DG DG DG 20 20 20 N 1 5.33 0.30 108.30 113.63 C C C O4' C1' N1 DC DC DC 21 21 21 N 1 4.70 0.60 118.90 123.60 C C C N1 C2 O2 DC DC DC 21 21 21 N 1 10.15 1.20 115.70 125.85 C C C C5' C4' C3' DT DT DT 22 22 22 N 1 3.82 0.50 106.80 110.62 C C C O4' C1' C2' DT DT DT 22 22 22 N 1 5.46 0.60 119.00 124.46 C C C C4 C5 C7 DT DT DT 22 22 22 N 1 -7.30 0.60 122.90 115.60 C C C C6 C5 C7 DT DT DT 22 22 22 N 1 15.14 1.90 104.00 119.14 C C C O3' P O5' DT DT DT 22 23 23 Y 1 7.38 0.60 106.00 113.38 C C C O4' C4' C3' DT DT DT 23 23 23 N 1 -7.70 1.00 110.10 102.40 C C C C1' O4' C4' DT DT DT 23 23 23 N 1 -7.88 0.70 102.20 94.32 C C C C4' C3' C2' DT DT DT 23 23 23 N 1 3.66 0.60 127.20 130.86 C C C C2 N3 C4 DT DT DT 23 23 23 N 1 -4.18 0.60 115.20 111.02 C C C N3 C4 C5 DT DT DT 23 23 23 N 1 6.22 0.70 124.90 131.12 C C C C5 C4 O4 DT DT DT 23 23 23 N 1 -3.72 0.60 122.90 119.18 C C C C6 C5 C7 DT DT DT 23 23 23 N 1 9.10 1.20 119.70 128.80 C C C C3' O3' P DT DT DC 23 23 24 Y 1 22.79 0.30 108.30 131.09 C C C O4' C1' N1 DC DC DC 24 24 24 N 1 3.93 0.60 106.00 109.93 D D D O4' C4' C3' DG DG DG 25 25 25 N 1 -4.36 0.70 102.20 97.84 D D D C4' C3' C2' DG DG DG 25 25 25 N 1 5.02 0.30 108.30 113.32 D D D O4' C1' N9 DG DG DG 25 25 25 N 1 -3.27 0.40 106.40 103.13 D D D C8 N9 C4 DG DG DG 25 25 25 N 1 2.90 0.40 105.40 108.30 D D D N9 C4 C5 DG DG DG 25 25 25 N 1 7.79 1.20 119.70 127.49 D D D C3' O3' P DG DG DA 25 25 26 Y 1 -7.92 1.00 110.10 102.18 D D D C1' O4' C4' DA DA DA 26 26 26 N 1 4.60 0.50 106.80 111.40 D D D O4' C1' C2' DA DA DA 26 26 26 N 1 4.37 0.30 108.30 112.67 D D D O4' C1' N9 DA DA DA 26 26 26 N 1 7.62 0.60 118.60 126.22 D D D C6 N1 C2 DA DA DA 26 26 26 N 1 -4.47 0.50 117.70 113.23 D D D C5 C6 N1 DA DA DA 26 26 26 N 1 6.38 0.80 123.70 130.08 D D D C5 C6 N6 DA DA DA 26 26 26 N 1 -5.79 0.80 109.40 103.61 D D D O5' C5' C4' DA DA DA 27 27 27 N 1 12.00 1.60 120.90 132.90 D D D P O5' C5' DA DA DA 27 27 27 N 1 -7.37 1.00 110.10 102.73 D D D C1' O4' C4' DA DA DA 27 27 27 N 1 16.33 2.00 112.30 128.63 D D D C4' C3' O3' DA DA DA 27 27 27 N 1 -17.77 2.50 109.40 91.63 D D D C2' C3' O3' DA DA DA 27 27 27 N 1 -7.88 0.70 102.20 94.32 D D D C4' C3' C2' DA DA DA 27 27 27 N 1 12.24 0.30 108.30 120.54 D D D O4' C1' N9 DA DA DA 27 27 27 N 1 5.99 0.60 118.60 124.59 D D D C6 N1 C2 DA DA DA 27 27 27 N 1 -3.15 0.50 129.30 126.15 D D D N1 C2 N3 DA DA DA 27 27 27 N 1 -3.15 0.50 117.70 114.55 D D D C5 C6 N1 DA DA DA 27 27 27 N 1 4.93 0.80 123.70 128.63 D D D C5 C6 N6 DA DA DA 27 27 27 N 1 11.36 1.20 119.70 131.06 D D D C3' O3' P DA DA DG 27 27 28 Y 1 12.15 1.60 120.90 133.05 D D D P O5' C5' DG DG DG 28 28 28 N 1 3.30 0.50 113.10 116.40 D D D N7 C8 N9 DG DG DG 28 28 28 N 1 -2.71 0.40 106.40 103.69 D D D C8 N9 C4 DG DG DG 28 28 28 N 1 10.32 1.20 119.70 130.02 D D D C3' O3' P DG DG DC 28 28 29 Y 1 -4.87 0.40 104.50 99.63 D D D O4' C4' C3' DC DC DC 29 29 29 N 1 -7.77 0.70 102.20 94.43 D D D C4' C3' C2' DC DC DC 29 29 29 N 1 5.18 0.30 108.30 113.48 D D D O4' C1' N1 DC DC DC 29 29 29 N 1 -5.46 0.70 102.20 96.74 D D D C4' C3' C2' DT DT DT 30 30 30 N 1 2.32 0.30 108.30 110.62 D D D O4' C1' N1 DT DT DT 30 30 30 N 1 -3.98 0.60 127.20 123.22 D D D C2 N3 C4 DT DT DT 30 30 30 N 1 6.69 0.60 118.00 124.69 D D D C4 C5 C6 DT DT DT 30 30 30 N 1 4.66 0.60 119.90 124.56 D D D N3 C4 O4 DT DT DT 30 30 30 N 1 -8.34 0.60 122.90 114.56 D D D C6 C5 C7 DT DT DT 30 30 30 N 1 6.13 0.70 110.30 116.43 D D D C1' O4' C4' DT DT DT 31 31 31 N 1 -19.79 2.50 109.40 89.61 D D D C2' C3' O3' DT DT DT 31 31 31 N 1 -7.03 0.70 102.20 95.17 D D D C4' C3' C2' DT DT DT 31 31 31 N 1 -19.31 0.80 105.90 86.59 D D D O4' C1' C2' DT DT DT 31 31 31 N 1 8.28 0.30 108.30 116.58 D D D O4' C1' N1 DT DT DT 31 31 31 N 1 -3.40 0.50 121.30 117.90 D D D C6 N1 C2 DT DT DT 31 31 31 N 1 -4.72 0.60 122.30 117.58 D D D N3 C2 O2 DT DT DT 31 31 31 N 1 -5.10 0.60 122.90 117.80 D D D C6 C5 C7 DT DT DT 31 31 31 N 1 11.10 0.30 108.30 119.40 D D D O4' C1' N1 DC DC DC 32 32 32 N 1 A A C5' C4' DG DG 1 1 0.052 0.007 1.512 1.564 N 1 A A O3' P DA DG 3 4 0.079 0.012 1.607 1.686 Y 1 A A C5' C4' DC DC 5 5 0.043 0.007 1.512 1.555 N 1 A A O3' P DC DT 5 6 0.077 0.012 1.607 1.684 Y 1 A A C2' C1' DT DT 6 6 0.073 0.010 1.519 1.592 N 1 A A N1 C2 DT DT 6 6 0.065 0.008 1.376 1.441 N 1 A A C5 C6 DT DT 6 6 0.042 0.007 1.339 1.381 N 1 A A C6 N1 DT DT 6 6 0.043 0.007 1.378 1.421 N 1 B B C5' C4' DG DG 9 9 0.052 0.007 1.512 1.564 N 1 B B P O5' DA DA 10 10 0.091 0.010 1.593 1.684 N 1 B B C5' C4' DA DA 10 10 0.073 0.007 1.512 1.585 N 1 B B C3' C2' DA DA 11 11 -0.061 0.008 1.516 1.455 N 1 B B C5' C4' DG DG 12 12 0.064 0.007 1.512 1.576 N 1 B B P O5' DC DC 13 13 -0.062 0.010 1.593 1.531 N 1 B B C2 N3 DT DT 15 15 -0.061 0.008 1.373 1.312 N 1 B B C5' C4' DC DC 16 16 0.052 0.007 1.512 1.564 N 1 C C C5' C4' DG DG 17 17 0.070 0.007 1.512 1.582 N 1 C C P O5' DA DA 19 19 0.097 0.010 1.593 1.690 N 1 C C C5' C4' DA DA 19 19 0.058 0.007 1.512 1.570 N 1 C C C3' C2' DA DA 19 19 -0.056 0.008 1.516 1.460 N 1 C C C2' C1' DA DA 19 19 -0.069 0.010 1.518 1.449 N 1 C C P O5' DG DG 20 20 0.085 0.010 1.593 1.678 N 1 C C P O5' DT DT 22 22 0.064 0.010 1.593 1.657 N 1 C C C5' C4' DT DT 22 22 0.056 0.007 1.512 1.568 N 1 C C C4' C3' DT DT 22 22 0.061 0.010 1.529 1.590 N 1 C C C5 C7 DT DT 23 23 0.058 0.006 1.496 1.554 N 1 D D C5' C4' DG DG 25 25 0.052 0.007 1.512 1.564 N 1 D D C3' C2' DA DA 26 26 -0.049 0.008 1.516 1.467 N 1 D D C6 N1 DA DA 26 26 -0.045 0.007 1.351 1.306 N 1 D D C4' C3' DA DA 27 27 0.071 0.010 1.529 1.600 N 1 D D C3' C2' DA DA 27 27 -0.063 0.008 1.516 1.453 N 1 D D P O5' DG DG 28 28 0.083 0.010 1.593 1.676 N 1 D D C5' C4' DG DG 28 28 0.092 0.007 1.512 1.604 N 1 D D P O5' DT DT 30 30 0.081 0.010 1.593 1.674 N 1 D D C2 N3 DT DT 30 30 0.070 0.008 1.373 1.443 N 1 D D C5 C7 DT DT 30 30 -0.045 0.006 1.496 1.451 N 1 D D P O5' DT DT 31 31 0.098 0.010 1.593 1.691 N 1 D D C5' C4' DT DT 31 31 0.091 0.007 1.512 1.603 N 1 D D C5' C4' DC DC 32 32 0.054 0.007 1.512 1.566 N 1 D D C3' C2' DC DC 32 32 -0.051 0.008 1.516 1.465 N 0.2120000 0.2120000 3.000 10.000 1035 1 1.500 TR isotropic TR isotropic 3.000 10.000 140 784 0 644 0 0.039 6.40 fix fix 3.000 10.0 172D 1928 1035 1.500 1 refinement X-PLOR MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 16 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 16 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 16 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 15 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 15 B O4 DT 7 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 14 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 14 B O4 DT 6 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 13 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 13 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 13 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 12 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 12 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 12 B N2 DG 4 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 11 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 11 B N6 DA 3 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 10 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 10 B N6 DA 2 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 9 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 9 B N2 DG 1 1_555 hydrog WATSON-CRICK C DG 17 C N1 DG 1 1_555 D DC 32 D N3 DC 8 1_555 hydrog WATSON-CRICK C DG 17 C N2 DG 1 1_555 D DC 32 D O2 DC 8 1_555 hydrog WATSON-CRICK C DG 17 C O6 DG 1 1_555 D DC 32 D N4 DC 8 1_555 hydrog WATSON-CRICK C DA 18 C N1 DA 2 1_555 D DT 31 D N3 DT 7 1_555 hydrog WATSON-CRICK C DA 18 C N6 DA 2 1_555 D DT 31 D O4 DT 7 1_555 hydrog WATSON-CRICK C DA 19 C N1 DA 3 1_555 D DT 30 D N3 DT 6 1_555 hydrog WATSON-CRICK C DA 19 C N6 DA 3 1_555 D DT 30 D O4 DT 6 1_555 hydrog WATSON-CRICK C DG 20 C N1 DG 4 1_555 D DC 29 D N3 DC 5 1_555 hydrog WATSON-CRICK C DG 20 C N2 DG 4 1_555 D DC 29 D O2 DC 5 1_555 hydrog WATSON-CRICK C DG 20 C O6 DG 4 1_555 D DC 29 D N4 DC 5 1_555 hydrog WATSON-CRICK C DC 21 C N3 DC 5 1_555 D DG 28 D N1 DG 4 1_555 hydrog WATSON-CRICK C DC 21 C N4 DC 5 1_555 D DG 28 D O6 DG 4 1_555 hydrog WATSON-CRICK C DC 21 C O2 DC 5 1_555 D DG 28 D N2 DG 4 1_555 hydrog WATSON-CRICK C DT 22 C N3 DT 6 1_555 D DA 27 D N1 DA 3 1_555 hydrog WATSON-CRICK C DT 22 C O4 DT 6 1_555 D DA 27 D N6 DA 3 1_555 hydrog WATSON-CRICK C DT 23 C N3 DT 7 1_555 D DA 26 D N1 DA 2 1_555 hydrog WATSON-CRICK C DT 23 C O4 DT 7 1_555 D DA 26 D N6 DA 2 1_555 hydrog WATSON-CRICK C DC 24 C N3 DC 8 1_555 D DG 25 D N1 DG 1 1_555 hydrog WATSON-CRICK C DC 24 C N4 DC 8 1_555 D DG 25 D O6 DG 1 1_555 hydrog WATSON-CRICK C DC 24 C O2 DC 8 1_555 D DG 25 D N2 DG 1 1_555 DNA A-DNA, DOUBLE HELIX, DNA 172D PDB 1 172D 1 8 172D 1 8 172D A 1 1 8 9 16 172D 9 16 172D B 1 1 8 17 24 172D 17 24 172D C 1 1 8 25 32 172D 25 32 172D D 1 1 8 146 H 3