0.014306 0.000000 0.000000 0.000000 0.016284 0.000000 0.000000 0.000000 0.018433 0.00000 0.00000 0.00000 VALINES 19 A AND 25 B OF ACTINOMYCIN D ARE D-VALINES. Kamitori, S. Takusagawa, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 32 90.00 90.00 90.00 69.900 61.410 54.250 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H11 N O2 117.146 D-VALINE D-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 n N-METHYLVALINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C16 H12 N2 O4 296.277 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE non-polymer C3 H7 N O2 89.093 n SARCOSINE peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 R C N 146 N C N 147 N C N 148 N C N 149 N C N 150 N O N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N O N 164 N H N 165 N H N 166 N N N 167 N C N 168 S C N 169 N C N 170 N C N 171 N C N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H Y 205 N C N 206 N C N 207 N O Y 208 N C N 209 N N Y 210 N C N 211 N O Y 212 N C Y 213 N O Y 214 N C Y 215 N C Y 216 N C Y 217 N C N 218 N C N 219 N O Y 220 N N Y 221 N C Y 222 N C Y 223 N C Y 224 N C N 225 N C N 226 N C N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 N C N 241 N C N 242 N O N 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 R C N 257 N O N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing Y 209 N doub Y 210 N sing N 211 N doub N 212 N sing N 213 N sing Y 214 N sing N 215 N sing N 216 N sing N 217 N doub Y 218 N sing Y 219 N doub N 220 N sing Y 221 N sing Y 222 N sing Y 223 N doub Y 224 N sing N 225 N sing Y 226 N sing N 227 N sing Y 228 N doub N 229 N sing N 230 N sing Y 231 N sing N 232 N doub N 233 N sing Y 234 N doub Y 235 N sing Y 236 N sing Y 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 116 4154 10.1021/JA00089A002 Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of D(Gaagcttc)2-Actinomycin D Complexes and its Host DNA 1994 10.2210/pdb173d/pdb pdb_0000173d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 123.00 1 DIFFRACTOMETER RIGAKU AFC-5R SINGLE WAVELENGTH M x-ray 1 1.0 2426.617 DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') 2 syn polymer 1259.447 ACTINOMYCIN D 2 nat polymer 18.015 water 96 nat water DACTINOMYCIN no no (DG)(DA)(DA)(DG)(DC)(DT)(DT)(DC) GAAGCTTC A,B polydeoxyribonucleotide no yes T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA) TVPGVXTVPGV C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n sample 1890 STREPTOMYCES ANTIBIOTICUS 2.88 57.36 7.00 PH 7.00, VAPOR DIFFUSION, TEMPERATURE 277.00K WATER 1 MPD 1 MGCL2 1 NA CACODYLATE 1 SPERMINE_HCL 1 WATER 2 MPD 2 pdbx_struct_assembly pdbx_unobs_or_zero_occ_atoms atom_site chem_comp_atom chem_comp_bond database_2 pdbx_validate_torsion struct_conn repository Initial release Version format compliance Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Other Other Advisory Derived calculations Atomic model Data collection Database references Derived calculations 1 0 1994-10-15 1 1 2011-06-14 1 2 2011-07-13 1 3 2011-07-27 1 4 2012-02-15 1 5 2012-12-12 1 6 2017-11-01 2 0 2023-11-15 _pdbx_struct_assembly.method_details _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry CRYSTAL STRUCTURE OF ACTINOMYCIN Z3 CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2 CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC) CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2 CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2 SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2 CRYSTAL STRUCTURE OF ACTINOMYCIN X2 BNL Y NDB 1994-04-18 REL HOH water ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) Antibiotic ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) Actinomycin D Polypeptide HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2001 3 HOH HOH 2001 B HOH 2002 3 HOH HOH 2002 B HOH 2003 3 HOH HOH 2003 B HOH 2004 3 HOH HOH 2004 B HOH 2005 3 HOH HOH 2005 B HOH 2006 3 HOH HOH 2006 B HOH 2007 3 HOH HOH 2007 B HOH 2008 3 HOH HOH 2008 B HOH 2009 3 HOH HOH 2009 B HOH 2010 3 HOH HOH 2010 B HOH 2011 3 HOH HOH 2011 B HOH 2012 3 HOH HOH 2012 B HOH 2013 3 HOH HOH 2013 B HOH 2014 3 HOH HOH 2014 B HOH 2015 3 HOH HOH 2015 B HOH 2016 3 HOH HOH 2016 B HOH 2017 3 HOH HOH 2017 B HOH 2018 3 HOH HOH 2018 B HOH 2019 3 HOH HOH 2019 B HOH 2020 3 HOH HOH 2020 B HOH 2021 3 HOH HOH 2021 B HOH 2022 3 HOH HOH 2022 B HOH 2023 3 HOH HOH 2023 B HOH 2024 3 HOH HOH 2024 B HOH 2025 3 HOH HOH 2025 B HOH 2026 3 HOH HOH 2026 B HOH 2027 3 HOH HOH 2027 B HOH 2028 3 HOH HOH 2028 B HOH 2029 3 HOH HOH 2029 B HOH 2030 3 HOH HOH 2030 B HOH 2031 3 HOH HOH 2031 B HOH 2032 3 HOH HOH 2032 B HOH 2033 3 HOH HOH 2033 B HOH 2001 3 HOH HOH 2001 C HOH 2002 3 HOH HOH 2002 C HOH 2003 3 HOH HOH 2003 C HOH 2004 3 HOH HOH 2004 C HOH 2005 3 HOH HOH 2005 C HOH 2006 3 HOH HOH 2006 C HOH 2007 3 HOH HOH 2007 C HOH 2001 3 HOH HOH 2001 D HOH 2002 3 HOH HOH 2002 D HOH 2003 3 HOH HOH 2003 D HOH 2004 3 HOH HOH 2004 D HOH 2005 3 HOH HOH 2005 D HOH 2006 3 HOH HOH 2006 D HOH 2007 3 HOH HOH 2007 D HOH 2008 3 HOH HOH 2008 D HOH 2009 3 HOH HOH 2009 D HOH 2010 3 HOH HOH 2010 D DG 1 n 1 DG 1 A DA 2 n 2 DA 2 A DA 3 n 3 DA 3 A DG 4 n 4 DG 4 A DC 5 n 5 DC 5 A DT 6 n 6 DT 6 A DT 7 n 7 DT 7 A DC 8 n 8 DC 8 A DG 9 n 1 DG 9 B DA 10 n 2 DA 10 B DA 11 n 3 DA 11 B DG 12 n 4 DG 12 B DC 13 n 5 DC 13 B DT 14 n 6 DT 14 B DT 15 n 7 DT 15 B DC 16 n 8 DC 16 B THR 1 n 1 THR 1 C DVA 2 n 2 DVA 2 C PRO 3 n 3 PRO 3 C SAR 4 n 4 SAR 4 C MVA 5 n 5 MVA 5 C PXZ 6 n 6 PXZ 6 C n 7 7 C n 8 8 C n 9 9 C n 10 10 C n 11 11 C n 1 1 D n 2 2 D n 3 3 D n 4 4 D n 5 5 D PXZ 6 n 6 PXZ 6 D THR 7 n 7 THR 7 D DVA 8 n 8 DVA 8 D PRO 9 n 9 PRO 9 D SAR 10 n 10 SAR 10 D MVA 11 n 11 MVA 11 D software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 4 tetrameric 2990 -15 3060 3110 -11 2810 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 14_555 -x+1/2,-y+1/2,z crystal symmetry operation 34.9500000000 30.7050000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 C PXZ 6 C PXZ 6 1 C PXZ 6 C PXZ 6 1 D PXZ 6 D PXZ 6 1 D PXZ 6 D PXZ 6 1 C THR 7 C THR 7 1 Y 1 C DVA 8 C DVA 8 1 Y 1 C PRO 9 C PRO 9 1 Y 1 C SAR 10 C SAR 10 1 Y 1 C MVA 11 C MVA 11 1 Y 1 D THR 1 D THR 1 1 Y 1 D DVA 2 D DVA 2 1 Y 1 D PRO 3 D PRO 3 1 Y 1 D SAR 4 D SAR 4 1 Y 1 D MVA 5 D MVA 5 1 Y 1 B C4' DT 15 WRONG HAND 1 A DG 1 0.063 SIDE CHAIN 1 B DA 10 0.084 SIDE CHAIN 1 B DT 15 0.071 SIDE CHAIN 1 8.02 1.10 109.80 117.82 A A A C5' C4' O4' DG DG DG 1 1 1 N 1 -17.12 2.50 109.40 92.28 A A A C2' C3' O3' DG DG DG 1 1 1 N 1 -7.59 0.70 102.20 94.61 A A A C4' C3' C2' DG DG DG 1 1 1 N 1 7.48 0.30 108.30 115.78 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 5.72 0.60 119.90 125.62 A A A N1 C6 O6 DG DG DG 1 1 1 N 1 -4.78 0.60 128.60 123.82 A A A C5 C6 O6 DG DG DG 1 1 1 N 1 18.60 1.20 119.70 138.30 A A A C3' O3' P DG DG DA 1 1 2 Y 1 -14.24 1.90 104.00 89.76 A A A O3' P O5' DG DA DA 1 2 2 Y 1 9.66 0.30 108.30 117.96 A A A O4' C1' N9 DA DA DA 2 2 2 N 1 3.19 0.50 117.70 120.89 A A A C5 C6 N1 DA DA DA 2 2 2 N 1 -13.94 0.40 104.50 90.56 A A A O4' C4' C3' DA DA DA 3 3 3 N 1 -6.37 1.00 110.10 103.73 A A A C1' O4' C4' DA DA DA 3 3 3 N 1 15.87 1.40 114.30 130.17 A A A N9 C1' C2' DA DA DA 3 3 3 N 1 3.86 0.60 118.60 122.46 A A A C6 N1 C2 DA DA DA 3 3 3 N 1 -8.37 0.40 104.50 96.13 A A A O4' C4' C3' DG DG DG 4 4 4 N 1 -12.40 1.80 114.10 101.70 A A A C5' C4' C3' DG DG DG 4 4 4 N 1 8.58 1.10 109.80 118.38 A A A C5' C4' O4' DG DG DG 4 4 4 N 1 17.56 2.00 112.30 129.86 A A A C4' C3' O3' DG DG DG 4 4 4 N 1 5.97 0.90 103.10 109.07 A A A C4' C3' C2' DG DG DG 4 4 4 N 1 -7.05 0.80 102.40 95.35 A A A C3' C2' C1' DG DG DG 4 4 4 N 1 9.16 1.40 114.30 123.46 A A A N9 C1' C2' DG DG DG 4 4 4 N 1 9.41 0.30 108.30 117.71 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 12.50 1.20 119.70 132.20 A A A C3' O3' P DG DG DC 4 4 5 Y 1 -5.52 0.40 104.50 98.98 A A A O4' C4' C3' DC DC DC 5 5 5 N 1 -6.06 0.70 102.20 96.14 A A A C4' C3' C2' DC DC DC 5 5 5 N 1 -5.41 0.80 105.90 100.49 A A A O4' C1' C2' DC DC DC 5 5 5 N 1 11.73 0.30 108.30 120.03 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 -3.94 0.40 104.50 100.56 A A A O4' C4' C3' DT DT DT 6 6 6 N 1 8.28 1.20 115.70 123.98 A A A C5' C4' C3' DT DT DT 6 6 6 N 1 11.02 0.30 108.30 119.32 A A A O4' C1' N1 DT DT DT 6 6 6 N 1 -3.95 0.60 122.30 118.35 A A A N3 C2 O2 DT DT DT 6 6 6 N 1 -4.55 0.60 122.90 118.35 A A A C6 C5 C7 DT DT DT 6 6 6 N 1 -4.45 0.70 102.20 97.75 A A A C4' C3' C2' DT DT DT 7 7 7 N 1 -12.34 0.80 105.90 93.56 A A A O4' C1' C2' DT DT DT 7 7 7 N 1 10.87 0.30 108.30 119.17 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 -4.25 0.60 127.20 122.95 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 4.15 0.60 118.00 122.15 A A A C4 C5 C6 DT DT DT 7 7 7 N 1 -6.58 0.60 122.90 116.32 A A A C6 C5 C7 DT DT DT 7 7 7 N 1 -12.35 1.90 109.30 96.95 A A A C5' C4' O4' DC DC DC 8 8 8 N 1 14.39 0.30 108.30 122.69 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 -6.65 1.10 118.80 112.15 A A A C2 N1 C1' DC DC DC 8 8 8 N 1 9.78 1.40 114.30 124.08 B B B N9 C1' C2' DG DG DG 9 9 9 N 1 10.34 0.30 108.30 118.64 B B B O4' C1' N9 DG DG DG 9 9 9 N 1 -4.07 0.40 110.80 106.73 B B B C4 C5 N7 DG DG DG 9 9 9 N 1 -4.14 0.40 106.40 102.26 B B B C8 N9 C4 DG DG DG 9 9 9 N 1 5.31 0.40 105.40 110.71 B B B N9 C4 C5 DG DG DG 9 9 9 N 1 -6.92 0.60 119.90 112.98 B B B N1 C6 O6 DG DG DG 9 9 9 N 1 6.93 0.60 128.60 135.53 B B B C5 C6 O6 DG DG DG 9 9 9 N 1 7.54 1.20 119.70 127.24 B B B C3' O3' P DG DG DA 9 9 10 Y 1 -5.00 0.80 109.40 104.40 B B B O5' C5' C4' DA DA DA 10 10 10 N 1 -6.85 0.40 104.50 97.65 B B B O4' C4' C3' DA DA DA 10 10 10 N 1 -13.07 1.90 109.30 96.23 B B B C5' C4' O4' DA DA DA 10 10 10 N 1 5.05 0.60 118.60 123.65 B B B C6 N1 C2 DA DA DA 10 10 10 N 1 -4.24 0.50 129.30 125.06 B B B N1 C2 N3 DA DA DA 10 10 10 N 1 2.66 0.40 105.80 108.46 B B B N9 C4 C5 DA DA DA 10 10 10 N 1 -4.48 0.60 118.60 114.12 B B B N1 C6 N6 DA DA DA 10 10 10 N 1 5.34 0.80 123.70 129.04 B B B C5 C6 N6 DA DA DA 10 10 10 N 1 -12.58 0.40 104.50 91.92 B B B O4' C4' C3' DA DA DA 11 11 11 N 1 14.99 2.00 112.30 127.29 B B B C4' C3' O3' DA DA DA 11 11 11 N 1 -8.05 0.80 105.90 97.85 B B B O4' C1' C2' DA DA DA 11 11 11 N 1 10.59 0.30 108.30 118.89 B B B O4' C1' N9 DA DA DA 11 11 11 N 1 4.90 0.60 118.60 123.50 B B B C6 N1 C2 DA DA DA 11 11 11 N 1 -4.30 0.50 117.70 113.40 B B B C5 C6 N1 DA DA DA 11 11 11 N 1 13.42 1.20 119.70 133.12 B B B C3' O3' P DA DA DG 11 11 12 Y 1 5.24 0.60 106.00 111.24 B B B O4' C4' C3' DG DG DG 12 12 12 N 1 -11.33 1.80 114.10 102.77 B B B C5' C4' C3' DG DG DG 12 12 12 N 1 8.40 1.10 109.80 118.20 B B B C5' C4' O4' DG DG DG 12 12 12 N 1 -6.35 0.70 102.20 95.85 B B B C4' C3' C2' DG DG DG 12 12 12 N 1 10.89 1.20 102.50 113.39 B B B C3' C2' C1' DG DG DG 12 12 12 N 1 -9.68 0.80 105.90 96.22 B B B O4' C1' C2' DG DG DG 12 12 12 N 1 6.65 0.30 108.30 114.95 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 -4.10 0.50 111.90 107.80 B B B C2 N3 C4 DG DG DG 12 12 12 N 1 4.96 0.60 118.80 123.76 B B B C4 C5 C6 DG DG DG 12 12 12 N 1 5.93 0.40 110.80 116.73 B B B C4 C5 N7 DG DG DG 12 12 12 N 1 -5.82 0.50 104.30 98.48 B B B C5 N7 C8 DG DG DG 12 12 12 N 1 8.11 0.50 113.10 121.21 B B B N7 C8 N9 DG DG DG 12 12 12 N 1 -3.24 0.40 106.40 103.16 B B B C8 N9 C4 DG DG DG 12 12 12 N 1 -5.00 0.40 105.40 100.40 B B B N9 C4 C5 DG DG DG 12 12 12 N 1 7.37 0.60 126.00 133.37 B B B N3 C4 N9 DG DG DG 12 12 12 N 1 -10.90 0.60 130.40 119.50 B B B C6 C5 N7 DG DG DG 12 12 12 N 1 -6.03 0.90 116.20 110.17 B B B N1 C2 N2 DG DG DG 12 12 12 N 1 9.27 0.60 119.90 129.17 B B B N1 C6 O6 DG DG DG 12 12 12 N 1 -10.91 0.60 128.60 117.69 B B B C5 C6 O6 DG DG DG 12 12 12 N 1 9.23 1.30 126.50 135.73 B B B C4 N9 C1' DG DG DG 12 12 12 N 1 7.42 1.20 119.70 127.12 B B B C3' O3' P DG DG DC 12 12 13 Y 1 -7.04 0.70 102.20 95.16 B B B C4' C3' C2' DC DC DC 13 13 13 N 1 15.02 0.30 108.30 123.32 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 4.00 0.60 118.90 122.90 B B B N1 C2 O2 DC DC DC 13 13 13 N 1 14.94 1.20 119.70 134.64 B B B C3' O3' P DC DC DT 13 13 14 Y 1 -4.56 0.40 104.50 99.94 B B B O4' C4' C3' DT DT DT 14 14 14 N 1 8.31 1.20 115.70 124.01 B B B C5' C4' C3' DT DT DT 14 14 14 N 1 -7.31 1.00 110.10 102.79 B B B C1' O4' C4' DT DT DT 14 14 14 N 1 12.91 2.00 112.30 125.21 B B B C4' C3' O3' DT DT DT 14 14 14 N 1 -7.10 0.80 105.90 98.80 B B B O4' C1' C2' DT DT DT 14 14 14 N 1 9.10 0.30 108.30 117.40 B B B O4' C1' N1 DT DT DT 14 14 14 N 1 4.10 0.60 127.20 131.30 B B B C2 N3 C4 DT DT DT 14 14 14 N 1 -3.90 0.60 122.90 119.00 B B B C6 C5 C7 DT DT DT 14 14 14 N 1 12.98 1.10 109.80 122.78 B B B C5' C4' O4' DT DT DT 15 15 15 N 1 -10.63 1.00 110.10 99.47 B B B C1' O4' C4' DT DT DT 15 15 15 N 1 12.38 1.40 114.30 126.68 B B B N1 C1' C2' DT DT DT 15 15 15 N 1 12.90 0.30 108.30 121.20 B B B O4' C1' N1 DT DT DT 15 15 15 N 1 -4.41 0.60 122.30 117.89 B B B N3 C2 O2 DT DT DT 15 15 15 N 1 -5.08 0.60 122.90 117.82 B B B C6 C5 C7 DT DT DT 15 15 15 N 1 -4.54 0.40 104.50 99.96 B B B O4' C4' C3' DC DC DC 16 16 16 N 1 10.24 1.10 109.80 120.04 B B B C5' C4' O4' DC DC DC 16 16 16 N 1 11.73 1.40 114.30 126.03 B B B N1 C1' C2' DC DC DC 16 16 16 N 1 19.11 0.30 108.30 127.41 B B B O4' C1' N1 DC DC DC 16 16 16 N 1 -2.52 0.40 120.30 117.78 B B B C6 N1 C2 DC DC DC 16 16 16 N 1 4.20 0.70 119.20 123.40 B B B N1 C2 N3 DC DC DC 16 16 16 N 1 -5.88 0.70 121.90 116.02 B B B N3 C2 O2 DC DC DC 16 16 16 N 1 10.42 1.50 110.90 121.32 C C C CA CB CG2 DVA DVA DVA 2 2 2 N 1 A A C2' C1' DG DG 1 1 -0.069 0.010 1.518 1.449 N 1 A A C5' C4' DA DA 2 2 0.057 0.007 1.512 1.569 N 1 A A N9 C4 DA DA 2 2 0.042 0.006 1.374 1.416 N 1 A A C4' C3' DA DA 3 3 -0.062 0.010 1.521 1.459 N 1 A A C3' C2' DG DG 4 4 -0.093 0.008 1.516 1.423 N 1 A A O3' C3' DG DG 4 4 0.126 0.013 1.435 1.561 N 1 A A P O5' DC DC 5 5 0.078 0.010 1.593 1.671 N 1 A A C5' C4' DC DC 5 5 0.075 0.007 1.512 1.587 N 1 A A C4' C3' DC DC 8 8 0.064 0.010 1.529 1.593 N 1 B B C5' C4' DG DG 9 9 0.055 0.007 1.512 1.567 N 1 B B O3' P DG DA 9 10 0.104 0.012 1.607 1.711 Y 1 B B C6 N1 DA DA 10 10 -0.043 0.007 1.351 1.308 N 1 B B O4' C1' DA DA 11 11 0.076 0.011 1.420 1.496 N 1 B B C4' C3' DG DG 12 12 -0.078 0.010 1.521 1.443 N 1 B B O3' C3' DG DG 12 12 0.118 0.013 1.435 1.553 N 1 B B C2 N3 DG DG 12 12 0.057 0.008 1.323 1.380 N 1 B B C5 C6 DG DG 12 12 -0.086 0.010 1.419 1.333 N 1 B B C5 N7 DG DG 12 12 -0.048 0.006 1.388 1.340 N 1 B B N7 C8 DG DG 12 12 -0.067 0.006 1.305 1.238 N 1 B B P O5' DC DC 13 13 0.142 0.010 1.593 1.735 N 1 B B C2' C1' DC DC 13 13 0.069 0.010 1.519 1.588 N 1 B B P O5' DT DT 14 14 0.117 0.010 1.593 1.710 N 1 B B C5' C4' DT DT 14 14 0.045 0.007 1.512 1.557 N 1 B B P O5' DC DC 16 16 0.102 0.010 1.593 1.695 N 1 B B C5' C4' DC DC 16 16 0.087 0.007 1.512 1.599 N 1 C C C11 C11 PXZ PXZ 6 6 2.16 1_555 2_555 1 D DVA 8 -16.04 -95.07 0.202 0.202 3.00 8.00 1016 1 2.000 3.00 8.00 96 512 0 322 94 0.037 5.90 3.000 173D 1016 1 refinement X-PLOR MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N covale 1.326 both C THR 1 C C THR 1 1_555 C DVA 2 C N DVA 2 1_555 covale 1.400 one C THR 1 C OG1 THR 1 1_555 C MVA 5 C C MVA 5 1_555 covale 1.334 one C THR 1 C N THR 1 1_555 C PXZ 6 C C0 PXZ 6 1_555 covale 1.338 both C DVA 2 C C DVA 2 1_555 C PRO 3 C N PRO 3 1_555 covale 1.378 both C PRO 3 C C PRO 3 1_555 C SAR 4 C N SAR 4 1_555 covale 1.345 both C SAR 4 C C SAR 4 1_555 C MVA 5 C N MVA 5 1_555 covale 1.310 none C PXZ 6 C N10 PXZ 6 1_555 C PXZ 6 C C11 PXZ 6 2_555 covale 1.276 none C PXZ 6 C O5 PXZ 6 1_555 C PXZ 6 C C12 PXZ 6 2_555 covale 1.425 none D PXZ 6 D N10 PXZ 6 1_555 D PXZ 6 D C11 PXZ 6 14_555 covale 1.435 none D PXZ 6 D O5 PXZ 6 1_555 D PXZ 6 D C12 PXZ 6 14_555 covale 1.366 one D PXZ 6 D C0 PXZ 6 1_555 D THR 7 D N THR 7 1_555 covale 1.353 both D THR 7 D C THR 7 1_555 D DVA 8 D N DVA 8 1_555 covale 1.394 one D THR 7 D OG1 THR 7 1_555 D MVA 11 D C MVA 11 1_555 covale 1.354 both D DVA 8 D C DVA 8 1_555 D PRO 9 D N PRO 9 1_555 covale 1.365 both D PRO 9 D C PRO 9 1_555 D SAR 10 D N SAR 10 1_555 covale 1.365 both D SAR 10 D C SAR 10 1_555 D MVA 11 D N MVA 11 1_555 DNA/ANTIBIOTIC ACTINOMYCIN, ANTIBIOTIC, ANTITUMOR, ANTICANCER, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX C DVA 2 C DVA 2 1 C PRO 3 C PRO 3 -4.23 C PRO 3 C PRO 3 1 C SAR 4 C SAR 4 3.45 D DVA 8 D DVA 8 1 D PRO 9 D PRO 9 -16.94 D PRO 9 D PRO 9 1 D SAR 10 D SAR 10 3.51 173D PDB 1 173D NOR00228 NOR 2 NOR00228 1 8 173D 1 8 173D A 1 1 8 9 16 173D 9 16 173D B 1 1 8 1 11 173D 1 11 NOR00228 C 2 1 11 1 11 173D 1 11 NOR00228 D 2 1 11 BINDING SITE FOR CHAIN C OF ACTINOMYCIN D Software 9 BINDING SITE FOR CHAIN D OF ACTINOMYCIN D Software 9 A DG 4 A DG 4 9 1_555 A DG 4 A DG 4 9 2_555 A DC 5 A DC 5 9 2_555 A DC 5 A DC 5 9 1_555 A DT 6 A DT 6 9 2_555 B DA 11 B DA 3 9 3_555 C HOH 2004 G HOH 9 1_555 C HOH 2005 G HOH 9 1_555 C HOH 2006 G HOH 9 1_555 B DG 12 B DG 4 9 1_555 B DG 12 B DG 4 9 14_555 B DC 13 B DC 5 9 1_555 B DC 13 B DC 5 9 14_555 B DT 14 B DT 6 9 14_555 B DT 15 B DT 7 9 14_555 B HOH 2025 F HOH 9 1_555 D HOH 2005 H HOH 9 1_555 D HOH 2009 H HOH 9 1_555 22 F 2 2 2