0.014306
0.000000
0.000000
0.000000
0.016284
0.000000
0.000000
0.000000
0.018433
0.00000
0.00000
0.00000
VALINES 19 A AND 25 B OF ACTINOMYCIN D ARE D-VALINES.
Kamitori, S.
Takusagawa, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.00
90.00
90.00
69.900
61.410
54.250
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
n
N-METHYLVALINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C16 H12 N2 O4
296.277
2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE
PHENOXAZINE
non-polymer
C3 H7 N O2
89.093
n
SARCOSINE
peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
N
N
167
N
C
N
168
S
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
Y
205
N
C
N
206
N
C
N
207
N
O
Y
208
N
C
N
209
N
N
Y
210
N
C
N
211
N
O
Y
212
N
C
Y
213
N
O
Y
214
N
C
Y
215
N
C
Y
216
N
C
Y
217
N
C
N
218
N
C
N
219
N
O
Y
220
N
N
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
N
225
N
C
N
226
N
C
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
R
C
N
257
N
O
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
doub
Y
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
Y
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
Y
218
N
sing
Y
219
N
doub
N
220
N
sing
Y
221
N
sing
Y
222
N
sing
Y
223
N
doub
Y
224
N
sing
N
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
doub
N
229
N
sing
N
230
N
sing
Y
231
N
sing
N
232
N
doub
N
233
N
sing
Y
234
N
doub
Y
235
N
sing
Y
236
N
sing
Y
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
116
4154
10.1021/JA00089A002
Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of D(Gaagcttc)2-Actinomycin D Complexes and its Host DNA
1994
10.2210/pdb173d/pdb
pdb_0000173d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
123.00
1
DIFFRACTOMETER
RIGAKU AFC-5R
SINGLE WAVELENGTH
M
x-ray
1
1.0
2426.617
DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3')
2
syn
polymer
1259.447
ACTINOMYCIN D
2
nat
polymer
18.015
water
96
nat
water
DACTINOMYCIN
no
no
(DG)(DA)(DA)(DG)(DC)(DT)(DT)(DC)
GAAGCTTC
A,B
polydeoxyribonucleotide
no
yes
T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)
TVPGVXTVPGV
C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1890
STREPTOMYCES ANTIBIOTICUS
2.88
57.36
7.00
PH 7.00, VAPOR DIFFUSION, TEMPERATURE 277.00K
WATER
1
MPD
1
MGCL2
1
NA CACODYLATE
1
SPERMINE_HCL
1
WATER
2
MPD
2
pdbx_struct_assembly
pdbx_unobs_or_zero_occ_atoms
atom_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_validate_torsion
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Other
Advisory
Derived calculations
Atomic model
Data collection
Database references
Derived calculations
1
0
1994-10-15
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-02-15
1
5
2012-12-12
1
6
2017-11-01
2
0
2023-11-15
_pdbx_struct_assembly.method_details
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
CRYSTAL STRUCTURE OF ACTINOMYCIN Z3
CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2
CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)
CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2
CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2
SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN X2
BNL
Y
NDB
1994-04-18
REL
HOH
water
ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE
ACTINOMYCIN FAMILY.
HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES)
Antibiotic
ACTINOMYCIN D CONSISTS OF TWO PENTAMER
RINGS LINKED BY THE CHROMOPHORE (PXZ)
Actinomycin D
Polypeptide
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2001
3
HOH
HOH
2001
C
HOH
2002
3
HOH
HOH
2002
C
HOH
2003
3
HOH
HOH
2003
C
HOH
2004
3
HOH
HOH
2004
C
HOH
2005
3
HOH
HOH
2005
C
HOH
2006
3
HOH
HOH
2006
C
HOH
2007
3
HOH
HOH
2007
C
HOH
2001
3
HOH
HOH
2001
D
HOH
2002
3
HOH
HOH
2002
D
HOH
2003
3
HOH
HOH
2003
D
HOH
2004
3
HOH
HOH
2004
D
HOH
2005
3
HOH
HOH
2005
D
HOH
2006
3
HOH
HOH
2006
D
HOH
2007
3
HOH
HOH
2007
D
HOH
2008
3
HOH
HOH
2008
D
HOH
2009
3
HOH
HOH
2009
D
HOH
2010
3
HOH
HOH
2010
D
DG
1
n
1
DG
1
A
DA
2
n
2
DA
2
A
DA
3
n
3
DA
3
A
DG
4
n
4
DG
4
A
DC
5
n
5
DC
5
A
DT
6
n
6
DT
6
A
DT
7
n
7
DT
7
A
DC
8
n
8
DC
8
A
DG
9
n
1
DG
9
B
DA
10
n
2
DA
10
B
DA
11
n
3
DA
11
B
DG
12
n
4
DG
12
B
DC
13
n
5
DC
13
B
DT
14
n
6
DT
14
B
DT
15
n
7
DT
15
B
DC
16
n
8
DC
16
B
THR
1
n
1
THR
1
C
DVA
2
n
2
DVA
2
C
PRO
3
n
3
PRO
3
C
SAR
4
n
4
SAR
4
C
MVA
5
n
5
MVA
5
C
PXZ
6
n
6
PXZ
6
C
n
7
7
C
n
8
8
C
n
9
9
C
n
10
10
C
n
11
11
C
n
1
1
D
n
2
2
D
n
3
3
D
n
4
4
D
n
5
5
D
PXZ
6
n
6
PXZ
6
D
THR
7
n
7
THR
7
D
DVA
8
n
8
DVA
8
D
PRO
9
n
9
PRO
9
D
SAR
10
n
10
SAR
10
D
MVA
11
n
11
MVA
11
D
software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
4
tetrameric
2990
-15
3060
3110
-11
2810
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
14_555
-x+1/2,-y+1/2,z
crystal symmetry operation
34.9500000000
30.7050000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
C
PXZ
6
C
PXZ
6
1
C
PXZ
6
C
PXZ
6
1
D
PXZ
6
D
PXZ
6
1
D
PXZ
6
D
PXZ
6
1
C
THR
7
C
THR
7
1
Y
1
C
DVA
8
C
DVA
8
1
Y
1
C
PRO
9
C
PRO
9
1
Y
1
C
SAR
10
C
SAR
10
1
Y
1
C
MVA
11
C
MVA
11
1
Y
1
D
THR
1
D
THR
1
1
Y
1
D
DVA
2
D
DVA
2
1
Y
1
D
PRO
3
D
PRO
3
1
Y
1
D
SAR
4
D
SAR
4
1
Y
1
D
MVA
5
D
MVA
5
1
Y
1
B
C4'
DT
15
WRONG HAND
1
A
DG
1
0.063
SIDE CHAIN
1
B
DA
10
0.084
SIDE CHAIN
1
B
DT
15
0.071
SIDE CHAIN
1
8.02
1.10
109.80
117.82
A
A
A
C5'
C4'
O4'
DG
DG
DG
1
1
1
N
1
-17.12
2.50
109.40
92.28
A
A
A
C2'
C3'
O3'
DG
DG
DG
1
1
1
N
1
-7.59
0.70
102.20
94.61
A
A
A
C4'
C3'
C2'
DG
DG
DG
1
1
1
N
1
7.48
0.30
108.30
115.78
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
5.72
0.60
119.90
125.62
A
A
A
N1
C6
O6
DG
DG
DG
1
1
1
N
1
-4.78
0.60
128.60
123.82
A
A
A
C5
C6
O6
DG
DG
DG
1
1
1
N
1
18.60
1.20
119.70
138.30
A
A
A
C3'
O3'
P
DG
DG
DA
1
1
2
Y
1
-14.24
1.90
104.00
89.76
A
A
A
O3'
P
O5'
DG
DA
DA
1
2
2
Y
1
9.66
0.30
108.30
117.96
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
3.19
0.50
117.70
120.89
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
1
-13.94
0.40
104.50
90.56
A
A
A
O4'
C4'
C3'
DA
DA
DA
3
3
3
N
1
-6.37
1.00
110.10
103.73
A
A
A
C1'
O4'
C4'
DA
DA
DA
3
3
3
N
1
15.87
1.40
114.30
130.17
A
A
A
N9
C1'
C2'
DA
DA
DA
3
3
3
N
1
3.86
0.60
118.60
122.46
A
A
A
C6
N1
C2
DA
DA
DA
3
3
3
N
1
-8.37
0.40
104.50
96.13
A
A
A
O4'
C4'
C3'
DG
DG
DG
4
4
4
N
1
-12.40
1.80
114.10
101.70
A
A
A
C5'
C4'
C3'
DG
DG
DG
4
4
4
N
1
8.58
1.10
109.80
118.38
A
A
A
C5'
C4'
O4'
DG
DG
DG
4
4
4
N
1
17.56
2.00
112.30
129.86
A
A
A
C4'
C3'
O3'
DG
DG
DG
4
4
4
N
1
5.97
0.90
103.10
109.07
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
1
-7.05
0.80
102.40
95.35
A
A
A
C3'
C2'
C1'
DG
DG
DG
4
4
4
N
1
9.16
1.40
114.30
123.46
A
A
A
N9
C1'
C2'
DG
DG
DG
4
4
4
N
1
9.41
0.30
108.30
117.71
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
12.50
1.20
119.70
132.20
A
A
A
C3'
O3'
P
DG
DG
DC
4
4
5
Y
1
-5.52
0.40
104.50
98.98
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
1
-6.06
0.70
102.20
96.14
A
A
A
C4'
C3'
C2'
DC
DC
DC
5
5
5
N
1
-5.41
0.80
105.90
100.49
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
1
11.73
0.30
108.30
120.03
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-3.94
0.40
104.50
100.56
A
A
A
O4'
C4'
C3'
DT
DT
DT
6
6
6
N
1
8.28
1.20
115.70
123.98
A
A
A
C5'
C4'
C3'
DT
DT
DT
6
6
6
N
1
11.02
0.30
108.30
119.32
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
-3.95
0.60
122.30
118.35
A
A
A
N3
C2
O2
DT
DT
DT
6
6
6
N
1
-4.55
0.60
122.90
118.35
A
A
A
C6
C5
C7
DT
DT
DT
6
6
6
N
1
-4.45
0.70
102.20
97.75
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
1
-12.34
0.80
105.90
93.56
A
A
A
O4'
C1'
C2'
DT
DT
DT
7
7
7
N
1
10.87
0.30
108.30
119.17
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
-4.25
0.60
127.20
122.95
A
A
A
C2
N3
C4
DT
DT
DT
7
7
7
N
1
4.15
0.60
118.00
122.15
A
A
A
C4
C5
C6
DT
DT
DT
7
7
7
N
1
-6.58
0.60
122.90
116.32
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
1
-12.35
1.90
109.30
96.95
A
A
A
C5'
C4'
O4'
DC
DC
DC
8
8
8
N
1
14.39
0.30
108.30
122.69
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
-6.65
1.10
118.80
112.15
A
A
A
C2
N1
C1'
DC
DC
DC
8
8
8
N
1
9.78
1.40
114.30
124.08
B
B
B
N9
C1'
C2'
DG
DG
DG
9
9
9
N
1
10.34
0.30
108.30
118.64
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
-4.07
0.40
110.80
106.73
B
B
B
C4
C5
N7
DG
DG
DG
9
9
9
N
1
-4.14
0.40
106.40
102.26
B
B
B
C8
N9
C4
DG
DG
DG
9
9
9
N
1
5.31
0.40
105.40
110.71
B
B
B
N9
C4
C5
DG
DG
DG
9
9
9
N
1
-6.92
0.60
119.90
112.98
B
B
B
N1
C6
O6
DG
DG
DG
9
9
9
N
1
6.93
0.60
128.60
135.53
B
B
B
C5
C6
O6
DG
DG
DG
9
9
9
N
1
7.54
1.20
119.70
127.24
B
B
B
C3'
O3'
P
DG
DG
DA
9
9
10
Y
1
-5.00
0.80
109.40
104.40
B
B
B
O5'
C5'
C4'
DA
DA
DA
10
10
10
N
1
-6.85
0.40
104.50
97.65
B
B
B
O4'
C4'
C3'
DA
DA
DA
10
10
10
N
1
-13.07
1.90
109.30
96.23
B
B
B
C5'
C4'
O4'
DA
DA
DA
10
10
10
N
1
5.05
0.60
118.60
123.65
B
B
B
C6
N1
C2
DA
DA
DA
10
10
10
N
1
-4.24
0.50
129.30
125.06
B
B
B
N1
C2
N3
DA
DA
DA
10
10
10
N
1
2.66
0.40
105.80
108.46
B
B
B
N9
C4
C5
DA
DA
DA
10
10
10
N
1
-4.48
0.60
118.60
114.12
B
B
B
N1
C6
N6
DA
DA
DA
10
10
10
N
1
5.34
0.80
123.70
129.04
B
B
B
C5
C6
N6
DA
DA
DA
10
10
10
N
1
-12.58
0.40
104.50
91.92
B
B
B
O4'
C4'
C3'
DA
DA
DA
11
11
11
N
1
14.99
2.00
112.30
127.29
B
B
B
C4'
C3'
O3'
DA
DA
DA
11
11
11
N
1
-8.05
0.80
105.90
97.85
B
B
B
O4'
C1'
C2'
DA
DA
DA
11
11
11
N
1
10.59
0.30
108.30
118.89
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
1
4.90
0.60
118.60
123.50
B
B
B
C6
N1
C2
DA
DA
DA
11
11
11
N
1
-4.30
0.50
117.70
113.40
B
B
B
C5
C6
N1
DA
DA
DA
11
11
11
N
1
13.42
1.20
119.70
133.12
B
B
B
C3'
O3'
P
DA
DA
DG
11
11
12
Y
1
5.24
0.60
106.00
111.24
B
B
B
O4'
C4'
C3'
DG
DG
DG
12
12
12
N
1
-11.33
1.80
114.10
102.77
B
B
B
C5'
C4'
C3'
DG
DG
DG
12
12
12
N
1
8.40
1.10
109.80
118.20
B
B
B
C5'
C4'
O4'
DG
DG
DG
12
12
12
N
1
-6.35
0.70
102.20
95.85
B
B
B
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
1
10.89
1.20
102.50
113.39
B
B
B
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
1
-9.68
0.80
105.90
96.22
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
1
6.65
0.30
108.30
114.95
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
-4.10
0.50
111.90
107.80
B
B
B
C2
N3
C4
DG
DG
DG
12
12
12
N
1
4.96
0.60
118.80
123.76
B
B
B
C4
C5
C6
DG
DG
DG
12
12
12
N
1
5.93
0.40
110.80
116.73
B
B
B
C4
C5
N7
DG
DG
DG
12
12
12
N
1
-5.82
0.50
104.30
98.48
B
B
B
C5
N7
C8
DG
DG
DG
12
12
12
N
1
8.11
0.50
113.10
121.21
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
1
-3.24
0.40
106.40
103.16
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
1
-5.00
0.40
105.40
100.40
B
B
B
N9
C4
C5
DG
DG
DG
12
12
12
N
1
7.37
0.60
126.00
133.37
B
B
B
N3
C4
N9
DG
DG
DG
12
12
12
N
1
-10.90
0.60
130.40
119.50
B
B
B
C6
C5
N7
DG
DG
DG
12
12
12
N
1
-6.03
0.90
116.20
110.17
B
B
B
N1
C2
N2
DG
DG
DG
12
12
12
N
1
9.27
0.60
119.90
129.17
B
B
B
N1
C6
O6
DG
DG
DG
12
12
12
N
1
-10.91
0.60
128.60
117.69
B
B
B
C5
C6
O6
DG
DG
DG
12
12
12
N
1
9.23
1.30
126.50
135.73
B
B
B
C4
N9
C1'
DG
DG
DG
12
12
12
N
1
7.42
1.20
119.70
127.12
B
B
B
C3'
O3'
P
DG
DG
DC
12
12
13
Y
1
-7.04
0.70
102.20
95.16
B
B
B
C4'
C3'
C2'
DC
DC
DC
13
13
13
N
1
15.02
0.30
108.30
123.32
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
4.00
0.60
118.90
122.90
B
B
B
N1
C2
O2
DC
DC
DC
13
13
13
N
1
14.94
1.20
119.70
134.64
B
B
B
C3'
O3'
P
DC
DC
DT
13
13
14
Y
1
-4.56
0.40
104.50
99.94
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
1
8.31
1.20
115.70
124.01
B
B
B
C5'
C4'
C3'
DT
DT
DT
14
14
14
N
1
-7.31
1.00
110.10
102.79
B
B
B
C1'
O4'
C4'
DT
DT
DT
14
14
14
N
1
12.91
2.00
112.30
125.21
B
B
B
C4'
C3'
O3'
DT
DT
DT
14
14
14
N
1
-7.10
0.80
105.90
98.80
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
1
9.10
0.30
108.30
117.40
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
4.10
0.60
127.20
131.30
B
B
B
C2
N3
C4
DT
DT
DT
14
14
14
N
1
-3.90
0.60
122.90
119.00
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
1
12.98
1.10
109.80
122.78
B
B
B
C5'
C4'
O4'
DT
DT
DT
15
15
15
N
1
-10.63
1.00
110.10
99.47
B
B
B
C1'
O4'
C4'
DT
DT
DT
15
15
15
N
1
12.38
1.40
114.30
126.68
B
B
B
N1
C1'
C2'
DT
DT
DT
15
15
15
N
1
12.90
0.30
108.30
121.20
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
1
-4.41
0.60
122.30
117.89
B
B
B
N3
C2
O2
DT
DT
DT
15
15
15
N
1
-5.08
0.60
122.90
117.82
B
B
B
C6
C5
C7
DT
DT
DT
15
15
15
N
1
-4.54
0.40
104.50
99.96
B
B
B
O4'
C4'
C3'
DC
DC
DC
16
16
16
N
1
10.24
1.10
109.80
120.04
B
B
B
C5'
C4'
O4'
DC
DC
DC
16
16
16
N
1
11.73
1.40
114.30
126.03
B
B
B
N1
C1'
C2'
DC
DC
DC
16
16
16
N
1
19.11
0.30
108.30
127.41
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
1
-2.52
0.40
120.30
117.78
B
B
B
C6
N1
C2
DC
DC
DC
16
16
16
N
1
4.20
0.70
119.20
123.40
B
B
B
N1
C2
N3
DC
DC
DC
16
16
16
N
1
-5.88
0.70
121.90
116.02
B
B
B
N3
C2
O2
DC
DC
DC
16
16
16
N
1
10.42
1.50
110.90
121.32
C
C
C
CA
CB
CG2
DVA
DVA
DVA
2
2
2
N
1
A
A
C2'
C1'
DG
DG
1
1
-0.069
0.010
1.518
1.449
N
1
A
A
C5'
C4'
DA
DA
2
2
0.057
0.007
1.512
1.569
N
1
A
A
N9
C4
DA
DA
2
2
0.042
0.006
1.374
1.416
N
1
A
A
C4'
C3'
DA
DA
3
3
-0.062
0.010
1.521
1.459
N
1
A
A
C3'
C2'
DG
DG
4
4
-0.093
0.008
1.516
1.423
N
1
A
A
O3'
C3'
DG
DG
4
4
0.126
0.013
1.435
1.561
N
1
A
A
P
O5'
DC
DC
5
5
0.078
0.010
1.593
1.671
N
1
A
A
C5'
C4'
DC
DC
5
5
0.075
0.007
1.512
1.587
N
1
A
A
C4'
C3'
DC
DC
8
8
0.064
0.010
1.529
1.593
N
1
B
B
C5'
C4'
DG
DG
9
9
0.055
0.007
1.512
1.567
N
1
B
B
O3'
P
DG
DA
9
10
0.104
0.012
1.607
1.711
Y
1
B
B
C6
N1
DA
DA
10
10
-0.043
0.007
1.351
1.308
N
1
B
B
O4'
C1'
DA
DA
11
11
0.076
0.011
1.420
1.496
N
1
B
B
C4'
C3'
DG
DG
12
12
-0.078
0.010
1.521
1.443
N
1
B
B
O3'
C3'
DG
DG
12
12
0.118
0.013
1.435
1.553
N
1
B
B
C2
N3
DG
DG
12
12
0.057
0.008
1.323
1.380
N
1
B
B
C5
C6
DG
DG
12
12
-0.086
0.010
1.419
1.333
N
1
B
B
C5
N7
DG
DG
12
12
-0.048
0.006
1.388
1.340
N
1
B
B
N7
C8
DG
DG
12
12
-0.067
0.006
1.305
1.238
N
1
B
B
P
O5'
DC
DC
13
13
0.142
0.010
1.593
1.735
N
1
B
B
C2'
C1'
DC
DC
13
13
0.069
0.010
1.519
1.588
N
1
B
B
P
O5'
DT
DT
14
14
0.117
0.010
1.593
1.710
N
1
B
B
C5'
C4'
DT
DT
14
14
0.045
0.007
1.512
1.557
N
1
B
B
P
O5'
DC
DC
16
16
0.102
0.010
1.593
1.695
N
1
B
B
C5'
C4'
DC
DC
16
16
0.087
0.007
1.512
1.599
N
1
C
C
C11
C11
PXZ
PXZ
6
6
2.16
1_555
2_555
1
D
DVA
8
-16.04
-95.07
0.202
0.202
3.00
8.00
1016
1
2.000
3.00
8.00
96
512
0
322
94
0.037
5.90
3.000
173D
1016
1
refinement
X-PLOR
MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
covale
1.326
both
C
THR
1
C
C
THR
1
1_555
C
DVA
2
C
N
DVA
2
1_555
covale
1.400
one
C
THR
1
C
OG1
THR
1
1_555
C
MVA
5
C
C
MVA
5
1_555
covale
1.334
one
C
THR
1
C
N
THR
1
1_555
C
PXZ
6
C
C0
PXZ
6
1_555
covale
1.338
both
C
DVA
2
C
C
DVA
2
1_555
C
PRO
3
C
N
PRO
3
1_555
covale
1.378
both
C
PRO
3
C
C
PRO
3
1_555
C
SAR
4
C
N
SAR
4
1_555
covale
1.345
both
C
SAR
4
C
C
SAR
4
1_555
C
MVA
5
C
N
MVA
5
1_555
covale
1.310
none
C
PXZ
6
C
N10
PXZ
6
1_555
C
PXZ
6
C
C11
PXZ
6
2_555
covale
1.276
none
C
PXZ
6
C
O5
PXZ
6
1_555
C
PXZ
6
C
C12
PXZ
6
2_555
covale
1.425
none
D
PXZ
6
D
N10
PXZ
6
1_555
D
PXZ
6
D
C11
PXZ
6
14_555
covale
1.435
none
D
PXZ
6
D
O5
PXZ
6
1_555
D
PXZ
6
D
C12
PXZ
6
14_555
covale
1.366
one
D
PXZ
6
D
C0
PXZ
6
1_555
D
THR
7
D
N
THR
7
1_555
covale
1.353
both
D
THR
7
D
C
THR
7
1_555
D
DVA
8
D
N
DVA
8
1_555
covale
1.394
one
D
THR
7
D
OG1
THR
7
1_555
D
MVA
11
D
C
MVA
11
1_555
covale
1.354
both
D
DVA
8
D
C
DVA
8
1_555
D
PRO
9
D
N
PRO
9
1_555
covale
1.365
both
D
PRO
9
D
C
PRO
9
1_555
D
SAR
10
D
N
SAR
10
1_555
covale
1.365
both
D
SAR
10
D
C
SAR
10
1_555
D
MVA
11
D
N
MVA
11
1_555
DNA/ANTIBIOTIC
ACTINOMYCIN, ANTIBIOTIC, ANTITUMOR, ANTICANCER, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX
C
DVA
2
C
DVA
2
1
C
PRO
3
C
PRO
3
-4.23
C
PRO
3
C
PRO
3
1
C
SAR
4
C
SAR
4
3.45
D
DVA
8
D
DVA
8
1
D
PRO
9
D
PRO
9
-16.94
D
PRO
9
D
PRO
9
1
D
SAR
10
D
SAR
10
3.51
173D
PDB
1
173D
NOR00228
NOR
2
NOR00228
1
8
173D
1
8
173D
A
1
1
8
9
16
173D
9
16
173D
B
1
1
8
1
11
173D
1
11
NOR00228
C
2
1
11
1
11
173D
1
11
NOR00228
D
2
1
11
BINDING SITE FOR CHAIN C OF ACTINOMYCIN D
Software
9
BINDING SITE FOR CHAIN D OF ACTINOMYCIN D
Software
9
A
DG
4
A
DG
4
9
1_555
A
DG
4
A
DG
4
9
2_555
A
DC
5
A
DC
5
9
2_555
A
DC
5
A
DC
5
9
1_555
A
DT
6
A
DT
6
9
2_555
B
DA
11
B
DA
3
9
3_555
C
HOH
2004
G
HOH
9
1_555
C
HOH
2005
G
HOH
9
1_555
C
HOH
2006
G
HOH
9
1_555
B
DG
12
B
DG
4
9
1_555
B
DG
12
B
DG
4
9
14_555
B
DC
13
B
DC
5
9
1_555
B
DC
13
B
DC
5
9
14_555
B
DT
14
B
DT
6
9
14_555
B
DT
15
B
DT
7
9
14_555
B
HOH
2025
F
HOH
9
1_555
D
HOH
2005
H
HOH
9
1_555
D
HOH
2009
H
HOH
9
1_555
22
F 2 2 2