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1
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1
1
1.00
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10.88
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1
1
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1
1
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10.88
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1
1
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1
1
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1
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1
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10.88
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1
1
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15.73
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1
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1
1
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1
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15.73
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1
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1
1
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1
N
15.73
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1
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1
1
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1
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15.73
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1
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1
1
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15.73
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1
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1
1
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1
1
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1
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1
1
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1
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1
1
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1
1
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1
1
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15.73
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1
1
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1
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1
1
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9.85
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2
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1
2
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2
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1
2
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9.85
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2
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8.08
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2
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8.08
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2
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9.85
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2
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2
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13.73
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1
2
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13.73
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1
2
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N
13.73
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1
2
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13.73
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2
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1
2
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N
13.73
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1
2
1.00
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C
13.73
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2
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1
2
1.00
1
C
13.73
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2
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1
2
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13.73
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2
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1
2
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N
13.73
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2
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1
2
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13.73
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2
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1
2
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13.73
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2
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1
2
1.00
1
C
13.60
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3
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1
3
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1
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13.60
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3
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1
3
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13.60
-7.724
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3
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13.60
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3
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14.09
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3
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14.09
-6.518
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1
3
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14.09
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3
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14.09
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3
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13.60
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3
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14.09
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3
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6.00
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1
3
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6.00
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3
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1
3
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N
6.00
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3
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1
3
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C
6.00
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3
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1
3
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N
6.00
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3
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1
3
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C
6.00
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3
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1
3
1.00
1
C
6.00
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3
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1
3
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N
6.00
-0.222
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3
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DA
1
3
1.00
1
N
6.00
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3
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C2
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1
3
1.00
1
C
6.00
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3
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1
3
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N
6.00
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C4
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3
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C4
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1
3
1.00
1
C
18.28
-7.972
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4
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P
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1
4
1.00
1
P
18.28
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4
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1
4
1.00
1
O
18.28
-6.923
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4
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1
4
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O
18.28
-7.396
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4
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4
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O
13.54
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4
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4
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C
13.54
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4
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1
4
1.00
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C
13.54
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4
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O
13.54
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4
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C
18.28
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4
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O
13.54
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4
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6.00
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1
4
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C
6.00
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4
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1
4
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N
6.00
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4
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1
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1.00
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C
6.00
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4
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1
4
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N
6.00
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4
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1
4
1.00
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C
6.00
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4
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1
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1.00
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C
6.00
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4
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1
4
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O
6.00
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4
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1
4
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N
6.00
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4
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1
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1.00
1
C
6.00
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4
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1
4
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N
6.00
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4
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1
4
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N
6.00
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4
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1
4
1.00
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C
7.58
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5
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P
DC
1
5
1.00
1
P
7.58
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5
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1
5
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O
7.58
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5
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O
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-6.932
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5
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O
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-7.500
-2.519
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5
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C
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-6.634
-3.478
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5
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C
34.28
-5.321
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10.287
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5
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O
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-6.904
-5.004
9.623
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5
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C
7.58
-6.102
-5.716
8.597
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5
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1
5
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O
34.28
-6.423
-5.333
11.041
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5
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5
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C
6.00
-5.058
-4.708
11.035
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5
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1
5
1.00
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C
6.00
-4.313
-4.631
12.333
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5
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1
5
1.00
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N
6.00
-2.921
-4.618
12.258
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5
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1
5
1.00
1
C
6.00
-2.373
-4.636
11.151
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5
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1
5
1.00
1
O
6.00
-2.235
-4.499
13.407
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N3
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5
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N3
DC
1
5
1.00
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N
6.00
-2.856
-4.420
14.583
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5
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C4
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1
5
1.00
1
C
6.00
-2.131
-4.259
15.662
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N4
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5
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N4
DC
1
5
1.00
1
N
6.00
-4.265
-4.454
14.696
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5
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DC
1
5
1.00
1
C
6.00
-4.956
-4.555
13.538
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5
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C6
DC
1
5
1.00
1
C
9.85
-6.782
-6.328
7.232
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P
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6
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P
DT
1
6
1.00
1
P
9.85
-7.236
-5.229
6.340
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6
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DT
1
6
1.00
1
O
9.85
-7.782
-7.327
7.655
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6
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1
6
1.00
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O
9.85
-5.720
-7.116
6.345
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6
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1
6
1.00
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O
6.98
-4.598
-6.455
5.799
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6
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1
6
1.00
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C
6.98
-3.603
-7.293
4.984
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6
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DT
1
6
1.00
1
C
6.98
-2.425
-7.337
5.790
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6
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1
6
1.00
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O
6.98
-3.788
-8.779
4.677
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6
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1
6
1.00
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C
9.85
-2.816
-9.125
3.657
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6
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1
6
1.00
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O
6.98
-3.469
-9.396
6.046
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6
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C2'
DT
1
6
1.00
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C
6.00
-2.453
-8.458
6.678
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6
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C1'
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1
6
1.00
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C
6.00
-2.763
-8.245
8.089
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N1
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6
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N1
DT
1
6
1.00
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N
6.00
-1.739
-7.955
8.936
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6
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1
6
1.00
1
C
6.00
-0.556
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8.624
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6
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O2
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1
6
1.00
1
O
6.00
-2.087
-7.755
10.233
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N3
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6
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A
N3
DT
1
6
1.00
1
N
6.00
-3.354
-7.806
10.774
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6
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1
6
1.00
1
C
6.00
-3.528
-7.610
11.977
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6
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1
6
1.00
1
O
6.00
-4.366
-8.152
9.813
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6
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A
C5
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1
6
1.00
1
C
6.00
-5.807
-8.346
10.216
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C7
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6
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A
C7
DT
1
6
1.00
1
C
6.00
-4.037
-8.345
8.549
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C6
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6
ATOM
A
C6
DT
1
6
1.00
1
C
16.08
-2.154
-10.606
3.457
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P
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7
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P
DT
1
7
1.00
1
P
16.08
-1.155
-10.545
2.349
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OP1
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7
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1
7
1.00
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O
16.08
-3.263
-11.591
3.352
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7
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1
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O
16.08
-1.319
-11.006
4.765
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7
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7
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O
10.43
-0.178
-10.207
5.174
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7
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10.43
0.599
-10.752
6.343
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7
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1
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1
C
10.43
0.162
-10.301
7.624
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7
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O
10.43
0.306
-12.210
6.357
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7
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16.08
1.495
-12.975
6.609
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7
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7
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O
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-0.661
-12.215
7.544
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7
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7
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0.099
-11.397
8.489
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7
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7
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-0.385
-11.198
9.866
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7
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0.516
-10.952
10.918
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7
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1
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6.00
1.742
-10.926
10.776
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7
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1
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O
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-0.039
-10.698
12.187
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7
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-1.404
-10.726
12.433
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7
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1
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6.00
-1.835
-10.493
13.566
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7
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1
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O
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-2.227
-11.040
11.276
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7
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1
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6.00
-3.736
-11.139
11.380
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7
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1
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C
6.00
-1.707
-11.242
10.076
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7
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1
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1
C
11.00
1.757
-14.302
5.801
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8
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1
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1
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11.00
2.040
-14.005
4.379
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8
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1
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O
11.00
0.745
-15.320
6.171
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8
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O
11.00
3.123
-14.707
6.451
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8
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O
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4.278
-13.849
6.421
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8
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1
8
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C
9.14
4.690
-13.677
7.901
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8
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1
8
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9.14
3.380
-13.340
8.409
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8
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1
8
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O
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5.167
-14.975
8.691
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8
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1
8
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11.00
5.853
-14.847
9.946
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8
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8
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O
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3.872
-15.401
9.241
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8
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DC
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8
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3.200
-14.124
9.568
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8
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DC
1
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1.870
-14.384
10.157
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8
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1
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N
6.00
1.884
-14.293
11.533
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8
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1
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C
6.00
2.961
-14.007
12.050
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8
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1
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O
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0.747
-14.393
12.211
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8
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1
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N
6.00
-0.399
-14.575
11.547
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8
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1
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C
6.00
-1.512
-14.544
12.259
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8
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1
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N
6.00
-0.444
-14.705
10.125
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8
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A
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1
8
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C
6.00
0.727
-14.606
9.461
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8
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A
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1
8
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15.98
17.000
1.888
-10.066
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9
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DG
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1
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O
23.08
18.069
1.639
-9.126
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9
ATOM
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DG
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1
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C
23.08
17.784
2.199
-7.690
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9
ATOM
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DG
1
1
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C
23.08
18.785
1.829
-6.692
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9
ATOM
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DG
1
1
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O
23.08
17.635
3.748
-7.728
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9
ATOM
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DG
1
1
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C
15.98
16.278
4.023
-7.256
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9
ATOM
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DG
1
1
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O
23.08
18.888
4.138
-6.920
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9
ATOM
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DG
1
1
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C
9.80
19.045
3.015
-5.892
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9
ATOM
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C1'
DG
1
1
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C
9.80
20.168
2.962
-4.833
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N9
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9
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N9
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1
1
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N
9.80
21.511
3.168
-4.967
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C8
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9
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C8
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1
1
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C
9.80
22.217
2.998
-3.854
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N7
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9
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N7
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1
1
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N
9.80
21.288
2.653
-2.877
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9
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1
1
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C
9.80
21.401
2.294
-1.449
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9
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C6
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1
1
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C
9.80
22.330
2.149
-0.647
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9
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O6
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1
1
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O
9.80
20.178
2.041
-0.899
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N1
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9
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N1
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1
1
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N
9.80
19.016
2.097
-1.613
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9
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1
1
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9.80
17.918
1.814
-0.956
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9
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N2
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1
1
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N
9.80
18.889
2.385
-2.912
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9
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N3
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1
1
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N
9.80
20.050
2.657
-3.487
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C4
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9
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B
C4
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1
1
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1
C
24.79
14.966
4.628
-8.172
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10
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P
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1
2
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1
P
24.79
14.615
3.727
-9.311
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10
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1
2
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O
24.79
15.182
6.082
-8.425
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10
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1
2
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O
24.79
13.699
4.621
-7.214
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10
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2
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O
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13.143
3.417
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10
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DA
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2
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C
6.00
13.119
3.703
-5.158
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10
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B
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DA
1
2
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C
6.00
14.493
3.969
-5.032
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10
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B
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DA
1
2
1.00
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O
6.00
12.622
5.108
-4.941
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10
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B
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DA
1
2
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C
24.79
11.204
5.411
-5.087
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10
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B
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DA
1
2
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1
O
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13.555
5.750
-3.951
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DA
10
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B
C2'
DA
1
2
1.00
1
C
18.56
14.702
4.788
-3.907
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10
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B
C1'
DA
1
2
1.00
1
C
18.56
16.090
5.292
-3.998
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N9
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10
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B
N9
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1
2
1.00
1
N
18.56
16.855
5.723
-5.023
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C8
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10
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B
C8
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1
2
1.00
1
C
18.56
18.108
5.972
-4.687
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10
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B
N7
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1
2
1.00
1
N
18.56
18.148
5.669
-3.345
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10
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B
C5
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1
2
1.00
1
C
18.56
19.142
5.591
-2.358
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10
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B
C6
DA
1
2
1.00
1
C
18.56
20.426
5.764
-2.473
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10
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B
N6
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1
2
1.00
1
N
18.56
18.754
5.252
-1.156
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10
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B
N1
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1
2
1.00
1
N
18.56
17.518
5.002
-0.842
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C2
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10
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B
C2
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1
2
1.00
1
C
18.56
16.514
4.965
-1.693
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N3
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10
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B
N3
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1
2
1.00
1
N
18.56
16.903
5.312
-2.931
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C4
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10
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B
C4
DA
1
2
1.00
1
C
20.50
10.662
6.947
-5.073
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P
DA
11
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B
P
DA
1
3
1.00
1
P
20.50
9.185
7.024
-5.256
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11
ATOM
B
OP1
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1
3
1.00
1
O
20.50
11.496
7.763
-6.012
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11
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B
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1
3
1.00
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O
20.50
11.001
7.426
-3.610
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11
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B
O5'
DA
1
3
1.00
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O
13.98
10.493
6.898
-2.400
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DA
11
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B
C5'
DA
1
3
1.00
1
C
13.98
11.186
7.687
-1.312
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DA
11
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B
C4'
DA
1
3
1.00
1
C
13.98
12.416
6.992
-1.055
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11
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B
O4'
DA
1
3
1.00
1
O
13.98
11.928
8.958
-1.711
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DA
11
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B
C3'
DA
1
3
1.00
1
C
20.50
11.561
9.902
-2.756
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11
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B
O3'
DA
1
3
1.00
1
O
13.98
12.715
9.162
-0.455
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DA
11
ATOM
B
C2'
DA
1
3
1.00
1
C
10.54
13.471
7.847
-0.428
B
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DA
11
ATOM
B
C1'
DA
1
3
1.00
1
C
10.54
14.758
8.127
-1.210
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N9
DA
11
ATOM
B
N9
DA
1
3
1.00
1
N
10.54
14.999
8.340
-2.568
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C8
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11
ATOM
B
C8
DA
1
3
1.00
1
C
10.54
16.242
8.533
-2.898
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N7
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11
ATOM
B
N7
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1
3
1.00
1
N
10.54
16.912
8.427
-1.657
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C5
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11
ATOM
B
C5
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1
3
1.00
1
C
10.54
18.306
8.464
-1.291
B
C6
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11
ATOM
B
C6
DA
1
3
1.00
1
C
10.54
19.367
8.630
-2.127
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N6
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11
ATOM
B
N6
DA
1
3
1.00
1
N
10.54
18.515
8.252
-0.013
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N1
DA
11
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B
N1
DA
1
3
1.00
1
N
10.54
17.553
8.076
0.857
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C2
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11
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B
C2
DA
1
3
1.00
1
C
10.54
16.254
8.022
0.667
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N3
DA
11
ATOM
B
N3
DA
1
3
1.00
1
N
10.54
15.998
8.197
-0.639
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C4
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11
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B
C4
DA
1
3
1.00
1
C
8.80
12.114
11.404
-3.166
B
P
DG
12
ATOM
B
P
DG
1
4
1.00
1
P
8.80
11.339
11.979
-4.290
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12
ATOM
B
OP1
DG
1
4
1.00
1
O
8.80
13.585
11.382
-3.303
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12
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1
4
1.00
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O
8.80
11.685
12.233
-1.864
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12
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DG
1
4
1.00
1
O
6.00
10.319
12.266
-1.483
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DG
12
ATOM
B
C5'
DG
1
4
1.00
1
C
6.00
10.302
12.282
0.011
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C4'
DG
12
ATOM
B
C4'
DG
1
4
1.00
1
C
6.00
11.215
11.401
0.717
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O4'
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12
ATOM
B
O4'
DG
1
4
1.00
1
O
6.00
10.569
13.666
0.318
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C3'
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12
ATOM
B
C3'
DG
1
4
1.00
1
C
8.80
9.155
14.217
0.648
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O3'
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12
ATOM
B
O3'
DG
1
4
1.00
1
O
6.00
11.395
13.388
1.593
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C2'
DG
12
ATOM
B
C2'
DG
1
4
1.00
1
C
23.94
12.169
12.131
1.528
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C1'
DG
12
ATOM
B
C1'
DG
1
4
1.00
1
C
23.94
13.560
12.173
0.981
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N9
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12
ATOM
B
N9
DG
1
4
1.00
1
N
23.94
13.786
12.125
-0.340
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C8
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12
ATOM
B
C8
DG
1
4
1.00
1
C
23.94
14.938
12.115
-0.794
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N7
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12
ATOM
B
N7
DG
1
4
1.00
1
N
23.94
15.608
12.155
0.366
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C5
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12
ATOM
B
C5
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1
4
1.00
1
C
23.94
16.940
12.118
0.356
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C6
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12
ATOM
B
C6
DG
1
4
1.00
1
C
23.94
17.496
12.039
-0.725
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O6
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12
ATOM
B
O6
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1
4
1.00
1
O
23.94
17.481
12.115
1.600
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N1
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12
ATOM
B
N1
DG
1
4
1.00
1
N
23.94
16.712
12.161
2.763
B
C2
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12
ATOM
B
C2
DG
1
4
1.00
1
C
23.94
17.493
12.040
3.835
B
N2
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12
ATOM
B
N2
DG
1
4
1.00
1
N
23.94
15.336
12.240
2.826
B
N3
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12
ATOM
B
N3
DG
1
4
1.00
1
N
23.94
14.848
12.211
1.523
B
C4
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12
ATOM
B
C4
DG
1
4
1.00
1
C
18.81
8.424
14.275
2.140
B
P
DC
13
ATOM
B
P
DC
1
5
1.00
1
P
18.81
8.469
12.951
2.833
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OP1
DC
13
ATOM
B
OP1
DC
1
5
1.00
1
O
18.81
7.079
14.920
2.203
B
OP2
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13
ATOM
B
OP2
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1
5
1.00
1
O
18.81
9.493
15.369
2.958
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O5'
DC
13
ATOM
B
O5'
DC
1
5
1.00
1
O
19.93
9.497
16.744
2.466
B
C5'
DC
13
ATOM
B
C5'
DC
1
5
1.00
1
C
19.93
9.800
17.710
3.626
B
C4'
DC
13
ATOM
B
C4'
DC
1
5
1.00
1
C
19.93
11.236
17.881
3.601
B
O4'
DC
13
ATOM
B
O4'
DC
1
5
1.00
1
O
19.93
9.143
19.108
3.468
B
C3'
DC
13
ATOM
B
C3'
DC
1
5
1.00
1
C
18.81
9.275
19.964
4.598
B
O3'
DC
13
ATOM
B
O3'
DC
1
5
1.00
1
O
19.93
10.153
19.620
2.458
B
C2'
DC
13
ATOM
B
C2'
DC
1
5
1.00
1
C
6.00
11.586
19.079
2.877
B
C1'
DC
13
ATOM
B
C1'
DC
1
5
1.00
1
C
6.00
12.559
19.094
1.702
B
N1
DC
13
ATOM
B
N1
DC
1
5
1.00
1
N
6.00
13.999
19.250
1.859
B
C2
DC
13
ATOM
B
C2
DC
1
5
1.00
1
C
6.00
14.560
19.304
2.979
B
O2
DC
13
ATOM
B
O2
DC
1
5
1.00
1
O
6.00
14.731
19.242
0.710
B
N3
DC
13
ATOM
B
N3
DC
1
5
1.00
1
N
6.00
14.130
19.090
-0.501
B
C4
DC
13
ATOM
B
C4
DC
1
5
1.00
1
C
6.00
14.854
19.054
-1.588
B
N4
DC
13
ATOM
B
N4
DC
1
5
1.00
1
N
6.00
12.723
18.927
-0.677
B
C5
DC
13
ATOM
B
C5
DC
1
5
1.00
1
C
6.00
11.985
18.938
0.444
B
C6
DC
13
ATOM
B
C6
DC
1
5
1.00
1
C
18.92
8.415
20.196
5.973
B
P
DT
14
ATOM
B
P
DT
1
6
1.00
1
P
18.92
8.242
18.940
6.752
B
OP1
DT
14
ATOM
B
OP1
DT
1
6
1.00
1
O
18.92
7.170
20.941
5.677
B
OP2
DT
14
ATOM
B
OP2
DT
1
6
1.00
1
O
18.92
9.435
21.328
6.750
B
O5'
DT
14
ATOM
B
O5'
DT
1
6
1.00
1
O
6.00
10.810
21.168
7.212
B
C5'
DT
14
ATOM
B
C5'
DT
1
6
1.00
1
C
6.00
11.862
22.045
6.471
B
C4'
DT
14
ATOM
B
C4'
DT
1
6
1.00
1
C
6.00
11.610
21.855
5.065
B
O4'
DT
14
ATOM
B
O4'
DT
1
6
1.00
1
O
6.00
11.896
23.599
6.530
B
C3'
DT
14
ATOM
B
C3'
DT
1
6
1.00
1
C
18.92
12.947
24.384
7.121
B
O3'
DT
14
ATOM
B
O3'
DT
1
6
1.00
1
O
6.00
12.067
24.051
5.110
B
C2'
DT
14
ATOM
B
C2'
DT
1
6
1.00
1
C
10.12
12.533
22.798
4.441
B
C1'
DT
14
ATOM
B
C1'
DT
1
6
1.00
1
C
10.12
12.584
22.825
2.936
B
N1
DT
14
ATOM
B
N1
DT
1
6
1.00
1
N
10.12
13.826
23.025
2.327
B
C2
DT
14
ATOM
B
C2
DT
1
6
1.00
1
C
10.12
14.902
23.254
2.907
B
O2
DT
14
ATOM
B
O2
DT
1
6
1.00
1
O
10.12
13.766
22.885
0.941
B
N3
DT
14
ATOM
B
N3
DT
1
6
1.00
1
N
10.12
12.701
22.660
0.094
B
C4
DT
14
ATOM
B
C4
DT
1
6
1.00
1
C
10.12
12.865
22.521
-1.124
B
O4
DT
14
ATOM
B
O4
DT
1
6
1.00
1
O
10.12
11.458
22.541
0.817
B
C5
DT
14
ATOM
B
C5
DT
1
6
1.00
1
C
10.12
10.162
22.279
0.079
B
C7
DT
14
ATOM
B
C7
DT
1
6
1.00
1
C
10.12
11.443
22.599
2.174
B
C6
DT
14
ATOM
B
C6
DT
1
6
1.00
1
C
18.78
13.429
24.320
8.672
B
P
DT
15
ATOM
B
P
DT
1
7
1.00
1
P
18.78
14.170
23.045
8.905
B
OP1
DT
15
ATOM
B
OP1
DT
1
7
1.00
1
O
18.78
12.287
24.641
9.570
B
OP2
DT
15
ATOM
B
OP2
DT
1
7
1.00
1
O
18.78
14.421
25.582
8.826
B
O5'
DT
15
ATOM
B
O5'
DT
1
7
1.00
1
O
11.61
15.607
25.690
8.073
B
C5'
DT
15
ATOM
B
C5'
DT
1
7
1.00
1
C
11.61
15.640
26.994
7.346
B
C4'
DT
15
ATOM
B
C4'
DT
1
7
1.00
1
C
11.61
14.749
27.300
6.231
B
O4'
DT
15
ATOM
B
O4'
DT
1
7
1.00
1
O
11.61
16.929
27.584
6.926
B
C3'
DT
15
ATOM
B
C3'
DT
1
7
1.00
1
C
18.78
17.937
27.345
7.918
B
O3'
DT
15
ATOM
B
O3'
DT
1
7
1.00
1
O
11.61
17.036
26.925
5.543
B
C2'
DT
15
ATOM
B
C2'
DT
1
7
1.00
1
C
10.88
15.526
26.734
5.142
B
C1'
DT
15
ATOM
B
C1'
DT
1
7
1.00
1
C
10.88
14.959
26.654
3.719
B
N1
DT
15
ATOM
B
N1
DT
1
7
1.00
1
N
10.88
15.759
26.534
2.564
B
C2
DT
15
ATOM
B
C2
DT
1
7
1.00
1
C
10.88
16.984
26.557
2.516
B
O2
DT
15
ATOM
B
O2
DT
1
7
1.00
1
O
10.88
15.065
26.271
1.384
B
N3
DT
15
ATOM
B
N3
DT
1
7
1.00
1
N
10.88
13.719
26.189
1.205
B
C4
DT
15
ATOM
B
C4
DT
1
7
1.00
1
C
10.88
13.273
25.882
0.080
B
O4
DT
15
ATOM
B
O4
DT
1
7
1.00
1
O
10.88
12.964
26.430
2.430
B
C5
DT
15
ATOM
B
C5
DT
1
7
1.00
1
C
10.88
11.449
26.416
2.425
B
C7
DT
15
ATOM
B
C7
DT
1
7
1.00
1
C
10.88
13.588
26.612
3.612
B
C6
DT
15
ATOM
B
C6
DT
1
7
1.00
1
C
16.97
18.415
28.587
8.877
B
P
DC
16
ATOM
B
P
DC
1
8
1.00
1
P
16.97
19.534
28.139
9.750
B
OP1
DC
16
ATOM
B
OP1
DC
1
8
1.00
1
O
16.97
17.234
29.189
9.555
B
OP2
DC
16
ATOM
B
OP2
DC
1
8
1.00
1
O
16.97
19.043
29.744
7.810
B
O5'
DC
16
ATOM
B
O5'
DC
1
8
1.00
1
O
6.00
20.177
29.471
6.926
B
C5'
DC
16
ATOM
B
C5'
DC
1
8
1.00
1
C
6.00
19.983
29.662
5.350
B
C4'
DC
16
ATOM
B
C4'
DC
1
8
1.00
1
C
6.00
18.764
29.133
4.680
B
O4'
DC
16
ATOM
B
O4'
DC
1
8
1.00
1
O
6.00
20.049
31.011
4.735
B
C3'
DC
16
ATOM
B
C3'
DC
1
8
1.00
1
C
16.97
20.558
30.689
3.426
B
O3'
DC
16
ATOM
B
O3'
DC
1
8
1.00
1
O
6.00
18.558
31.430
4.673
B
C2'
DC
16
ATOM
B
C2'
DC
1
8
1.00
1
C
15.65
17.895
30.196
4.178
B
C1'
DC
16
ATOM
B
C1'
DC
1
8
1.00
1
C
15.65
16.422
30.072
3.736
B
N1
DC
16
ATOM
B
N1
DC
1
8
1.00
1
N
15.65
16.174
29.784
2.388
B
C2
DC
16
ATOM
B
C2
DC
1
8
1.00
1
C
15.65
17.092
29.650
1.607
B
O2
DC
16
ATOM
B
O2
DC
1
8
1.00
1
O
15.65
14.949
29.621
1.885
B
N3
DC
16
ATOM
B
N3
DC
1
8
1.00
1
N
15.65
13.903
29.748
2.689
B
C4
DC
16
ATOM
B
C4
DC
1
8
1.00
1
C
15.65
12.695
29.530
2.125
B
N4
DC
16
ATOM
B
N4
DC
1
8
1.00
1
N
15.65
14.082
30.060
4.093
B
C5
DC
16
ATOM
B
C5
DC
1
8
1.00
1
C
15.65
15.350
30.208
4.563
B
C6
DC
16
ATOM
B
C6
DC
1
8
1.00
1
C
6.00
-2.394
0.460
9.332
C
N
THR
1
ATOM
C
N
THR
2
1
1.00
1
N
6.00
-2.671
0.483
7.915
C
CA
THR
1
ATOM
C
CA
THR
2
1
1.00
1
C
6.00
-1.791
1.585
7.431
C
C
THR
1
ATOM
C
C
THR
2
1
1.00
1
C
6.00
-1.339
2.453
8.182
C
O
THR
1
ATOM
C
O
THR
2
1
1.00
1
O
25.89
-4.168
0.570
7.386
C
CB
THR
1
ATOM
C
CB
THR
2
1
1.00
1
C
25.89
-4.850
1.779
7.812
C
OG1
THR
1
ATOM
C
OG1
THR
2
1
1.00
1
O
25.89
-5.074
-0.607
7.762
C
CG2
THR
1
ATOM
C
CG2
THR
2
1
1.00
1
C
6.00
-1.430
1.230
6.205
C
N
DVA
2
HETATM
C
N
DVA
2
2
1.00
1
N
6.00
-0.735
2.069
5.262
C
CA
DVA
2
HETATM
C
CA
DVA
2
2
1.00
1
C
6.00
-1.156
1.560
3.834
C
CB
DVA
2
HETATM
C
CB
DVA
2
2
1.00
1
C
6.00
-2.669
1.708
3.597
C
CG1
DVA
2
HETATM
C
CG1
DVA
2
2
1.00
1
C
6.00
-0.341
1.931
2.578
C
CG2
DVA
2
HETATM
C
CG2
DVA
2
2
1.00
1
C
6.00
0.775
2.159
5.581
C
C
DVA
2
HETATM
C
C
DVA
2
2
1.00
1
C
6.00
1.584
1.255
5.326
C
O
DVA
2
HETATM
C
O
DVA
2
2
1.00
1
O
6.00
1.195
3.295
6.150
C
N
PRO
3
ATOM
C
N
PRO
2
3
1.00
1
N
6.00
0.343
4.435
6.387
C
CA
PRO
3
ATOM
C
CA
PRO
2
3
1.00
1
C
6.00
0.210
5.336
5.131
C
C
PRO
3
ATOM
C
C
PRO
2
3
1.00
1
C
6.00
1.110
5.266
4.265
C
O
PRO
3
ATOM
C
O
PRO
2
3
1.00
1
O
6.00
0.991
4.982
7.647
C
CB
PRO
3
ATOM
C
CB
PRO
2
3
1.00
1
C
6.00
2.336
4.332
7.876
C
CG
PRO
3
ATOM
C
CG
PRO
2
3
1.00
1
C
6.00
2.557
3.582
6.577
C
CD
PRO
3
ATOM
C
CD
PRO
2
3
1.00
1
C
12.56
-0.913
6.105
4.914
C
N
SAR
4
HETATM
C
N
SAR
2
4
1.00
1
N
12.56
-2.082
6.276
5.783
C
CA
SAR
4
HETATM
C
CA
SAR
2
4
1.00
1
C
12.56
-3.122
5.146
5.843
C
C
SAR
4
HETATM
C
C
SAR
2
4
1.00
1
C
12.56
-3.273
4.387
4.892
C
O
SAR
4
HETATM
C
O
SAR
2
4
1.00
1
O
10.91
-1.071
6.896
3.696
C
CN
SAR
4
HETATM
C
CN
SAR
2
4
1.00
1
C
21.37
-3.780
5.001
7.007
C
N
MVA
5
HETATM
C
N
MVA
2
5
1.00
1
N
38.95
-3.016
5.242
8.227
C
CN
MVA
5
HETATM
C
CN
MVA
2
5
1.00
1
C
21.37
-4.973
4.224
7.350
C
CA
MVA
5
HETATM
C
CA
MVA
2
5
1.00
1
C
38.95
-6.352
4.875
6.905
C
CB
MVA
5
HETATM
C
CB
MVA
2
5
1.00
1
C
38.95
-7.510
4.071
7.565
C
CG1
MVA
5
HETATM
C
CG1
MVA
2
5
1.00
1
C
38.95
-6.559
6.389
7.161
C
CG2
MVA
5
HETATM
C
CG2
MVA
2
5
1.00
1
C
21.37
-4.906
2.791
6.846
C
C
MVA
5
HETATM
C
C
MVA
2
5
1.00
1
C
21.37
-5.152
2.538
5.649
C
O
MVA
5
HETATM
C
O
MVA
2
5
1.00
1
O
6.00
-2.104
-0.814
11.165
C
C1
PXZ
6
HETATM
C
C1
PXZ
2
6
1.00
1
C
6.00
-2.029
-0.732
9.806
C
C0
PXZ
6
HETATM
C
C0
PXZ
2
6
1.00
1
C
6.00
-1.584
-1.644
9.120
C
O1
PXZ
6
HETATM
C
O1
PXZ
2
6
1.00
1
O
6.00
-3.196
-1.252
11.875
C
C2
PXZ
6
HETATM
C
C2
PXZ
2
6
1.00
1
C
6.00
-4.251
-1.652
11.272
C
N2
PXZ
6
HETATM
C
N2
PXZ
2
6
0.50
1
N
6.00
-3.211
-1.280
13.244
C
C3
PXZ
6
HETATM
C
C3
PXZ
2
6
1.00
1
C
6.00
-4.210
-1.667
13.808
C
O3
PXZ
6
HETATM
C
O3
PXZ
2
6
0.50
1
O
6.00
-2.105
-0.858
13.951
C
C4
PXZ
6
HETATM
C
C4
PXZ
2
6
1.00
1
C
6.00
0.000
0.000
13.846
C
O5
PXZ
6
HETATM
C
O5
PXZ
2
6
0.50
1
O
6.00
0.000
0.000
11.062
C
N10
PXZ
6
HETATM
C
N10
PXZ
2
6
0.50
1
N
6.00
-1.002
-0.400
11.805
C
C11
PXZ
6
HETATM
C
C11
PXZ
2
6
1.00
1
C
6.00
-1.021
-0.420
13.206
C
C12
PXZ
6
HETATM
C
C12
PXZ
2
6
1.00
1
C
6.00
-2.051
-0.851
15.468
C
C15
PXZ
6
HETATM
C
C15
PXZ
2
6
1.00
1
C
10.80
15.087
15.563
2.737
D
C1
PXZ
6
HETATM
D
C1
PXZ
2
6
1.00
1
C
10.80
15.179
15.563
4.136
D
C0
PXZ
6
HETATM
D
C0
PXZ
2
6
1.00
1
C
10.80
15.204
16.656
4.712
D
O1
PXZ
6
HETATM
D
O1
PXZ
2
6
1.00
1
O
10.80
13.868
15.662
2.049
D
C2
PXZ
6
HETATM
D
C2
PXZ
2
6
1.00
1
C
10.80
12.680
15.766
2.678
D
N2
PXZ
6
HETATM
D
N2
PXZ
2
6
1.00
1
N
10.80
13.869
15.643
0.648
D
C3
PXZ
6
HETATM
D
C3
PXZ
2
6
1.00
1
C
10.80
12.786
15.724
0.038
D
O3
PXZ
6
HETATM
D
O3
PXZ
2
6
1.00
1
O
10.80
15.070
15.537
-0.064
D
C4
PXZ
6
HETATM
D
C4
PXZ
2
6
1.00
1
C
10.80
17.424
15.353
-0.069
D
O5
PXZ
6
HETATM
D
O5
PXZ
2
6
0.50
1
O
10.80
17.424
15.353
2.717
D
N10
PXZ
6
HETATM
D
N10
PXZ
2
6
0.50
1
N
10.80
16.280
15.462
2.034
D
C11
PXZ
6
HETATM
D
C11
PXZ
2
6
1.00
1
C
10.80
16.272
15.451
0.622
D
C12
PXZ
6
HETATM
D
C12
PXZ
2
6
1.00
1
C
10.80
15.076
15.506
-1.590
D
C15
PXZ
6
HETATM
D
C15
PXZ
2
6
1.00
1
C
15.34
15.306
14.364
4.779
D
N
THR
7
ATOM
D
N
THR
2
7
1.00
1
N
15.34
15.417
14.417
6.252
D
CA
THR
7
ATOM
D
CA
THR
2
7
1.00
1
C
15.34
16.427
13.388
6.810
D
C
THR
7
ATOM
D
C
THR
2
7
1.00
1
C
15.34
17.552
13.388
6.305
D
O
THR
7
ATOM
D
O
THR
2
7
1.00
1
O
19.58
14.077
14.466
7.075
D
CB
THR
7
ATOM
D
CB
THR
2
7
1.00
1
C
19.58
13.435
13.182
7.064
D
OG1
THR
7
ATOM
D
OG1
THR
2
7
1.00
1
O
19.58
12.974
15.343
6.517
D
CG2
THR
7
ATOM
D
CG2
THR
2
7
1.00
1
C
6.00
16.048
12.438
7.695
D
N
DVA
8
HETATM
D
N
DVA
2
8
1.00
1
N
6.00
16.844
11.577
8.564
D
CA
DVA
8
HETATM
D
CA
DVA
2
8
1.00
1
C
16.61
16.444
11.848
10.063
D
CB
DVA
8
HETATM
D
CB
DVA
2
8
1.00
1
C
16.61
17.058
10.938
11.115
D
CG1
DVA
8
HETATM
D
CG1
DVA
2
8
1.00
1
C
16.61
16.493
13.302
10.554
D
CG2
DVA
8
HETATM
D
CG2
DVA
2
8
1.00
1
C
6.00
18.327
11.495
8.198
D
C
DVA
8
HETATM
D
C
DVA
2
8
1.00
1
C
6.00
19.142
12.353
8.581
D
O
DVA
8
HETATM
D
O
DVA
2
8
1.00
1
O
36.00
18.684
10.450
7.414
D
N
PRO
9
ATOM
D
N
PRO
2
9
1.00
1
N
36.00
17.883
9.207
7.169
D
CA
PRO
9
ATOM
D
CA
PRO
2
9
1.00
1
C
36.00
17.352
8.304
8.321
D
C
PRO
9
ATOM
D
C
PRO
2
9
1.00
1
C
36.00
18.160
7.838
9.145
D
O
PRO
9
ATOM
D
O
PRO
2
9
1.00
1
O
19.91
18.753
8.410
6.166
D
CB
PRO
9
ATOM
D
CB
PRO
2
9
1.00
1
C
19.91
19.154
9.585
5.271
D
CG
PRO
9
ATOM
D
CG
PRO
2
9
1.00
1
C
19.91
19.607
10.635
6.282
D
CD
PRO
9
ATOM
D
CD
PRO
2
9
1.00
1
C
13.00
16.023
8.023
8.457
D
N
SAR
10
HETATM
D
N
SAR
2
10
1.00
1
N
13.00
14.893
8.411
7.581
D
CA
SAR
10
HETATM
D
CA
SAR
2
10
1.00
1
C
13.00
14.128
9.757
7.624
D
C
SAR
10
HETATM
D
C
SAR
2
10
1.00
1
C
13.00
14.637
10.623
6.949
D
O
SAR
10
HETATM
D
O
SAR
2
10
1.00
1
O
21.04
15.658
7.006
9.446
D
CN
SAR
10
HETATM
D
CN
SAR
2
10
1.00
1
C
13.84
12.930
10.027
8.220
D
N
MVA
11
HETATM
D
N
MVA
2
11
1.00
1
N
6.00
12.187
8.775
8.360
D
CN
MVA
11
HETATM
D
CN
MVA
2
11
1.00
1
C
13.84
12.176
11.348
8.334
D
CA
MVA
11
HETATM
D
CA
MVA
2
11
1.00
1
C
6.00
11.199
11.515
9.566
D
CB
MVA
11
HETATM
D
CB
MVA
2
11
1.00
1
C
6.00
9.876
10.751
9.525
D
CG1
MVA
11
HETATM
D
CG1
MVA
2
11
1.00
1
C
6.00
11.937
11.401
10.895
D
CG2
MVA
11
HETATM
D
CG2
MVA
2
11
1.00
1
C
13.84
12.907
12.736
8.275
D
C
MVA
11
HETATM
D
C
MVA
2
11
1.00
1
C
13.84
12.863
13.582
9.194
D
O
MVA
11
HETATM
D
O
MVA
2
11
1.00
1
O
7.72
-5.657
11.878
17.159
A
O
HOH
2001
HETATM
E
O
HOH
3
1.00
1
O
10.55
1.136
10.927
24.701
A
O
HOH
2002
HETATM
E
O
HOH
3
1.00
1
O
6.00
-5.327
13.957
21.473
A
O
HOH
2003
HETATM
E
O
HOH
3
1.00
1
O
6.00
0.389
7.383
25.158
A
O
HOH
2004
HETATM
E
O
HOH
3
1.00
1
O
9.35
-4.870
14.841
24.333
A
O
HOH
2005
HETATM
E
O
HOH
3
1.00
1
O
6.00
-3.607
3.476
27.185
A
O
HOH
2006
HETATM
E
O
HOH
3
1.00
1
O
6.00
-9.658
7.951
14.195
A
O
HOH
2007
HETATM
E
O
HOH
3
1.00
1
O
17.61
-11.510
-0.339
9.594
A
O
HOH
2008
HETATM
E
O
HOH
3
1.00
1
O
6.34
-5.586
-10.994
7.957
A
O
HOH
2009
HETATM
E
O
HOH
3
1.00
1
O
13.23
-10.650
-4.144
7.280
A
O
HOH
2010
HETATM
E
O
HOH
3
1.00
1
O
6.00
-7.041
-6.680
0.399
A
O
HOH
2011
HETATM
E
O
HOH
3
1.00
1
O
6.00
-5.565
-15.023
11.516
A
O
HOH
2012
HETATM
E
O
HOH
3
1.00
1
O
6.00
-5.150
1.815
29.223
A
O
HOH
2013
HETATM
E
O
HOH
3
1.00
1
O
7.10
-9.879
-4.664
9.754
A
O
HOH
2014
HETATM
E
O
HOH
3
1.00
1
O
6.00
-7.915
-9.264
-2.016
A
O
HOH
2015
HETATM
E
O
HOH
3
1.00
1
O
6.00
-11.056
0.341
19.896
A
O
HOH
2016
HETATM
E
O
HOH
3
1.00
1
O
6.00
-14.752
8.757
16.784
A
O
HOH
2017
HETATM
E
O
HOH
3
1.00
1
O
6.00
9.856
-17.032
12.878
A
O
HOH
2018
HETATM
E
O
HOH
3
1.00
1
O
6.00
11.887
-15.229
12.202
A
O
HOH
2019
HETATM
E
O
HOH
3
1.00
1
O
6.00
13.826
-15.932
10.170
A
O
HOH
2020
HETATM
E
O
HOH
3
1.00
1
O
6.00
-4.968
6.025
22.286
A
O
HOH
2021
HETATM
E
O
HOH
3
1.00
1
O
6.00
1.198
6.955
17.665
A
O
HOH
2022
HETATM
E
O
HOH
3
1.00
1
O
6.00
-3.375
5.282
24.386
A
O
HOH
2023
HETATM
E
O
HOH
3
1.00
1
O
6.00
-2.978
5.507
19.167
A
O
HOH
2024
HETATM
E
O
HOH
3
1.00
1
O
16.40
-6.800
8.981
26.736
A
O
HOH
2025
HETATM
E
O
HOH
3
1.00
1
O
6.00
-9.281
6.862
23.173
A
O
HOH
2026
HETATM
E
O
HOH
3
1.00
1
O
6.00
3.077
7.996
15.731
A
O
HOH
2027
HETATM
E
O
HOH
3
1.00
1
O
21.74
-10.948
5.972
15.675
A
O
HOH
2028
HETATM
E
O
HOH
3
1.00
1
O
7.85
-4.449
4.042
17.204
A
O
HOH
2029
HETATM
E
O
HOH
3
1.00
1
O
6.00
-7.630
6.756
11.276
A
O
HOH
2030
HETATM
E
O
HOH
3
1.00
1
O
7.02
-10.355
1.277
11.501
A
O
HOH
2031
HETATM
E
O
HOH
3
1.00
1
O
6.00
-0.097
3.390
18.437
A
O
HOH
2032
HETATM
E
O
HOH
3
1.00
1
O
18.90
-9.288
-1.516
16.609
A
O
HOH
2033
HETATM
E
O
HOH
3
1.00
1
O
6.00
-11.068
-0.856
15.033
A
O
HOH
2034
HETATM
E
O
HOH
3
1.00
1
O
6.00
-7.580
-9.836
6.191
A
O
HOH
2035
HETATM
E
O
HOH
3
1.00
1
O
6.00
-6.199
-5.460
2.901
A
O
HOH
2036
HETATM
E
O
HOH
3
1.00
1
O
6.00
-10.163
-6.638
5.781
A
O
HOH
2037
HETATM
E
O
HOH
3
1.00
1
O
6.00
-10.649
-7.231
10.595
A
O
HOH
2038
HETATM
E
O
HOH
3
1.00
1
O
6.00
-4.942
-10.841
14.264
A
O
HOH
2039
HETATM
E
O
HOH
3
1.00
1
O
13.98
-1.030
-8.020
1.372
A
O
HOH
2040
HETATM
E
O
HOH
3
1.00
1
O
6.00
-4.358
-13.760
13.587
A
O
HOH
2041
HETATM
E
O
HOH
3
1.00
1
O
6.00
4.504
-11.681
11.611
A
O
HOH
2042
HETATM
E
O
HOH
3
1.00
1
O
6.00
0.510
-14.410
2.247
A
O
HOH
2043
HETATM
E
O
HOH
3
1.00
1
O
6.00
-1.858
-14.471
5.115
A
O
HOH
2044
HETATM
E
O
HOH
3
1.00
1
O
6.00
-3.068
-14.301
8.643
A
O
HOH
2045
HETATM
E
O
HOH
3
1.00
1
O
6.00
9.957
-16.109
9.184
A
O
HOH
2046
HETATM
E
O
HOH
3
1.00
1
O
6.00
15.060
5.015
-12.796
B
O
HOH
2001
HETATM
F
O
HOH
3
1.00
1
O
8.71
1.067
26.941
4.227
B
O
HOH
2002
HETATM
F
O
HOH
3
1.00
1
O
9.32
2.957
28.309
5.731
B
O
HOH
2003
HETATM
F
O
HOH
3
1.00
1
O
6.00
4.411
31.659
5.911
B
O
HOH
2004
HETATM
F
O
HOH
3
1.00
1
O
20.81
17.959
11.496
-10.290
B
O
HOH
2005
HETATM
F
O
HOH
3
1.00
1
O
9.64
21.294
14.348
-7.210
B
O
HOH
2006
HETATM
F
O
HOH
3
1.00
1
O
6.00
13.589
12.511
-11.986
B
O
HOH
2007
HETATM
F
O
HOH
3
1.00
1
O
6.00
7.517
10.193
-6.270
B
O
HOH
2008
HETATM
F
O
HOH
3
1.00
1
O
6.00
3.727
19.993
7.037
B
O
HOH
2009
HETATM
F
O
HOH
3
1.00
1
O
6.00
8.984
14.398
8.986
B
O
HOH
2010
HETATM
F
O
HOH
3
1.00
1
O
14.56
3.944
25.615
4.201
B
O
HOH
2011
HETATM
F
O
HOH
3
1.00
1
O
6.00
9.320
27.923
5.019
B
O
HOH
2012
HETATM
F
O
HOH
3
1.00
1
O
6.00
17.612
12.335
-7.349
B
O
HOH
2013
HETATM
F
O
HOH
3
1.00
1
O
6.99
10.557
1.147
0.590
B
O
HOH
2014
HETATM
F
O
HOH
3
1.00
1
O
6.00
6.133
12.327
-1.832
B
O
HOH
2015
HETATM
F
O
HOH
3
1.00
1
O
6.00
17.221
4.465
-11.389
B
O
HOH
2016
HETATM
F
O
HOH
3
1.00
1
O
6.00
14.629
4.991
0.012
B
O
HOH
2017
HETATM
F
O
HOH
3
1.00
1
O
6.00
16.771
11.405
-3.582
B
O
HOH
2018
HETATM
F
O
HOH
3
1.00
1
O
14.37
12.421
4.292
-1.313
B
O
HOH
2019
HETATM
F
O
HOH
3
1.00
1
O
6.00
10.222
9.495
-7.935
B
O
HOH
2020
HETATM
F
O
HOH
3
1.00
1
O
6.00
6.604
5.664
-3.703
B
O
HOH
2021
HETATM
F
O
HOH
3
1.00
1
O
6.00
11.172
5.531
1.427
B
O
HOH
2022
HETATM
F
O
HOH
3
1.00
1
O
6.00
6.539
18.326
1.778
B
O
HOH
2023
HETATM
F
O
HOH
3
1.00
1
O
6.00
4.863
15.395
0.326
B
O
HOH
2024
HETATM
F
O
HOH
3
1.00
1
O
6.00
12.000
18.259
6.516
B
O
HOH
2025
HETATM
F
O
HOH
3
1.00
1
O
6.00
8.783
24.194
6.220
B
O
HOH
2026
HETATM
F
O
HOH
3
1.00
1
O
6.00
5.484
22.570
4.926
B
O
HOH
2027
HETATM
F
O
HOH
3
1.00
1
O
6.00
6.544
17.593
5.258
B
O
HOH
2028
HETATM
F
O
HOH
3
1.00
1
O
8.91
7.605
16.720
9.497
B
O
HOH
2029
HETATM
F
O
HOH
3
1.00
1
O
6.00
4.937
19.421
4.089
B
O
HOH
2030
HETATM
F
O
HOH
3
1.00
1
O
6.00
14.542
26.714
11.307
B
O
HOH
2031
HETATM
F
O
HOH
3
1.00
1
O
6.00
10.191
23.400
10.197
B
O
HOH
2032
HETATM
F
O
HOH
3
1.00
1
O
6.00
9.949
29.503
2.769
B
O
HOH
2033
HETATM
F
O
HOH
3
1.00
1
O
6.70
-4.129
2.946
0.199
C
O
HOH
2001
HETATM
G
O
HOH
3
1.00
1
O
9.85
-8.283
4.569
0.948
C
O
HOH
2002
HETATM
G
O
HOH
3
1.00
1
O
6.00
-7.467
0.775
3.036
C
O
HOH
2003
HETATM
G
O
HOH
3
1.00
1
O
8.88
3.758
4.595
3.351
C
O
HOH
2004
HETATM
G
O
HOH
3
1.00
1
O
6.00
0.425
4.727
1.608
C
O
HOH
2005
HETATM
G
O
HOH
3
1.00
1
O
15.73
-4.144
5.128
2.054
C
O
HOH
2006
HETATM
G
O
HOH
3
1.00
1
O
6.00
-7.902
3.281
4.264
C
O
HOH
2007
HETATM
G
O
HOH
3
1.00
1
O
6.00
10.379
10.440
5.379
D
O
HOH
2001
HETATM
H
O
HOH
3
1.00
1
O
16.10
13.470
13.751
13.017
D
O
HOH
2002
HETATM
H
O
HOH
3
1.00
1
O
20.38
14.948
11.273
14.324
D
O
HOH
2003
HETATM
H
O
HOH
3
1.00
1
O
6.00
10.279
17.242
13.916
D
O
HOH
2004
HETATM
H
O
HOH
3
1.00
1
O
7.78
12.882
12.477
4.481
D
O
HOH
2005
HETATM
H
O
HOH
3
1.00
1
O
14.68
19.683
7.897
12.181
D
O
HOH
2006
HETATM
H
O
HOH
3
1.00
1
O
6.00
17.641
6.197
11.891
D
O
HOH
2007
HETATM
H
O
HOH
3
1.00
1
O
6.00
14.491
9.071
11.567
D
O
HOH
2008
HETATM
H
O
HOH
3
1.00
1
O
6.00
15.693
9.427
4.301
D
O
HOH
2009
HETATM
H
O
HOH
3
1.00
1
O
6.00
10.677
15.517
11.100
D
O
HOH
2010
HETATM
H
O
HOH
3
1.00
1
O
0.014306
0.000000
0.000000
0.000000
0.016284
0.000000
0.000000
0.000000
0.018433
0.00000
0.00000
0.00000
VALINES 19 A AND 25 B OF ACTINOMYCIN D ARE D-VALINES.
Kamitori, S.
Takusagawa, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.00
90.00
90.00
69.900
61.410
54.250
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
n
N-METHYLVALINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C16 H12 N2 O4
296.277
2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE
PHENOXAZINE
non-polymer
C3 H7 N O2
89.093
n
SARCOSINE
peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
N
N
167
N
C
N
168
S
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
Y
205
N
C
N
206
N
C
N
207
N
O
Y
208
N
C
N
209
N
N
Y
210
N
C
N
211
N
O
Y
212
N
C
Y
213
N
O
Y
214
N
C
Y
215
N
C
Y
216
N
C
Y
217
N
C
N
218
N
C
N
219
N
O
Y
220
N
N
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
N
225
N
C
N
226
N
C
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
R
C
N
257
N
O
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
doub
Y
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
Y
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
Y
218
N
sing
Y
219
N
doub
N
220
N
sing
Y
221
N
sing
Y
222
N
sing
Y
223
N
doub
Y
224
N
sing
N
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
doub
N
229
N
sing
N
230
N
sing
Y
231
N
sing
N
232
N
doub
N
233
N
sing
Y
234
N
doub
Y
235
N
sing
Y
236
N
sing
Y
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
116
4154
10.1021/JA00089A002
Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of D(Gaagcttc)2-Actinomycin D Complexes and its Host DNA
1994
10.2210/pdb173d/pdb
pdb_0000173d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
123.00
1
DIFFRACTOMETER
RIGAKU AFC-5R
SINGLE WAVELENGTH
M
x-ray
1
1.0
2426.617
DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3')
2
syn
polymer
1259.447
ACTINOMYCIN D
2
nat
polymer
18.015
water
96
nat
water
DACTINOMYCIN
no
no
(DG)(DA)(DA)(DG)(DC)(DT)(DT)(DC)
GAAGCTTC
A,B
polydeoxyribonucleotide
no
yes
T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)
TVPGVXTVPGV
C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1890
STREPTOMYCES ANTIBIOTICUS
2.88
57.36
7.00
PH 7.00, VAPOR DIFFUSION, TEMPERATURE 277.00K
WATER
1
MPD
1
MGCL2
1
NA CACODYLATE
1
SPERMINE_HCL
1
WATER
2
MPD
2
pdbx_struct_assembly
pdbx_unobs_or_zero_occ_atoms
atom_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_validate_torsion
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Other
Advisory
Derived calculations
Atomic model
Data collection
Database references
Derived calculations
1
0
1994-10-15
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-02-15
1
5
2012-12-12
1
6
2017-11-01
2
0
2023-11-15
_pdbx_struct_assembly.method_details
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
CRYSTAL STRUCTURE OF ACTINOMYCIN Z3
CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2
CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)
CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2
CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2
SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN X2
BNL
Y
NDB
1994-04-18
REL
HOH
water
ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE
ACTINOMYCIN FAMILY.
HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES)
Antibiotic
ACTINOMYCIN D CONSISTS OF TWO PENTAMER
RINGS LINKED BY THE CHROMOPHORE (PXZ)
Actinomycin D
Polypeptide
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2001
3
HOH
HOH
2001
C
HOH
2002
3
HOH
HOH
2002
C
HOH
2003
3
HOH
HOH
2003
C
HOH
2004
3
HOH
HOH
2004
C
HOH
2005
3
HOH
HOH
2005
C
HOH
2006
3
HOH
HOH
2006
C
HOH
2007
3
HOH
HOH
2007
C
HOH
2001
3
HOH
HOH
2001
D
HOH
2002
3
HOH
HOH
2002
D
HOH
2003
3
HOH
HOH
2003
D
HOH
2004
3
HOH
HOH
2004
D
HOH
2005
3
HOH
HOH
2005
D
HOH
2006
3
HOH
HOH
2006
D
HOH
2007
3
HOH
HOH
2007
D
HOH
2008
3
HOH
HOH
2008
D
HOH
2009
3
HOH
HOH
2009
D
HOH
2010
3
HOH
HOH
2010
D
DG
1
n
1
DG
1
A
DA
2
n
2
DA
2
A
DA
3
n
3
DA
3
A
DG
4
n
4
DG
4
A
DC
5
n
5
DC
5
A
DT
6
n
6
DT
6
A
DT
7
n
7
DT
7
A
DC
8
n
8
DC
8
A
DG
9
n
1
DG
9
B
DA
10
n
2
DA
10
B
DA
11
n
3
DA
11
B
DG
12
n
4
DG
12
B
DC
13
n
5
DC
13
B
DT
14
n
6
DT
14
B
DT
15
n
7
DT
15
B
DC
16
n
8
DC
16
B
THR
1
n
1
THR
1
C
DVA
2
n
2
DVA
2
C
PRO
3
n
3
PRO
3
C
SAR
4
n
4
SAR
4
C
MVA
5
n
5
MVA
5
C
PXZ
6
n
6
PXZ
6
C
n
7
7
C
n
8
8
C
n
9
9
C
n
10
10
C
n
11
11
C
n
1
1
D
n
2
2
D
n
3
3
D
n
4
4
D
n
5
5
D
PXZ
6
n
6
PXZ
6
D
THR
7
n
7
THR
7
D
DVA
8
n
8
DVA
8
D
PRO
9
n
9
PRO
9
D
SAR
10
n
10
SAR
10
D
MVA
11
n
11
MVA
11
D
software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
4
tetrameric
2990
-15
3060
3110
-11
2810
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
14_555
-x+1/2,-y+1/2,z
crystal symmetry operation
34.9500000000
30.7050000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
C
PXZ
6
C
PXZ
6
1
C
PXZ
6
C
PXZ
6
1
D
PXZ
6
D
PXZ
6
1
D
PXZ
6
D
PXZ
6
1
C
THR
7
C
THR
7
1
Y
1
C
DVA
8
C
DVA
8
1
Y
1
C
PRO
9
C
PRO
9
1
Y
1
C
SAR
10
C
SAR
10
1
Y
1
C
MVA
11
C
MVA
11
1
Y
1
D
THR
1
D
THR
1
1
Y
1
D
DVA
2
D
DVA
2
1
Y
1
D
PRO
3
D
PRO
3
1
Y
1
D
SAR
4
D
SAR
4
1
Y
1
D
MVA
5
D
MVA
5
1
Y
1
B
C4'
DT
15
WRONG HAND
1
A
DG
1
0.063
SIDE CHAIN
1
B
DA
10
0.084
SIDE CHAIN
1
B
DT
15
0.071
SIDE CHAIN
1
8.02
1.10
109.80
117.82
A
A
A
C5'
C4'
O4'
DG
DG
DG
1
1
1
N
1
-17.12
2.50
109.40
92.28
A
A
A
C2'
C3'
O3'
DG
DG
DG
1
1
1
N
1
-7.59
0.70
102.20
94.61
A
A
A
C4'
C3'
C2'
DG
DG
DG
1
1
1
N
1
7.48
0.30
108.30
115.78
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
5.72
0.60
119.90
125.62
A
A
A
N1
C6
O6
DG
DG
DG
1
1
1
N
1
-4.78
0.60
128.60
123.82
A
A
A
C5
C6
O6
DG
DG
DG
1
1
1
N
1
18.60
1.20
119.70
138.30
A
A
A
C3'
O3'
P
DG
DG
DA
1
1
2
Y
1
-14.24
1.90
104.00
89.76
A
A
A
O3'
P
O5'
DG
DA
DA
1
2
2
Y
1
9.66
0.30
108.30
117.96
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
3.19
0.50
117.70
120.89
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
1
-13.94
0.40
104.50
90.56
A
A
A
O4'
C4'
C3'
DA
DA
DA
3
3
3
N
1
-6.37
1.00
110.10
103.73
A
A
A
C1'
O4'
C4'
DA
DA
DA
3
3
3
N
1
15.87
1.40
114.30
130.17
A
A
A
N9
C1'
C2'
DA
DA
DA
3
3
3
N
1
3.86
0.60
118.60
122.46
A
A
A
C6
N1
C2
DA
DA
DA
3
3
3
N
1
-8.37
0.40
104.50
96.13
A
A
A
O4'
C4'
C3'
DG
DG
DG
4
4
4
N
1
-12.40
1.80
114.10
101.70
A
A
A
C5'
C4'
C3'
DG
DG
DG
4
4
4
N
1
8.58
1.10
109.80
118.38
A
A
A
C5'
C4'
O4'
DG
DG
DG
4
4
4
N
1
17.56
2.00
112.30
129.86
A
A
A
C4'
C3'
O3'
DG
DG
DG
4
4
4
N
1
5.97
0.90
103.10
109.07
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
1
-7.05
0.80
102.40
95.35
A
A
A
C3'
C2'
C1'
DG
DG
DG
4
4
4
N
1
9.16
1.40
114.30
123.46
A
A
A
N9
C1'
C2'
DG
DG
DG
4
4
4
N
1
9.41
0.30
108.30
117.71
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
12.50
1.20
119.70
132.20
A
A
A
C3'
O3'
P
DG
DG
DC
4
4
5
Y
1
-5.52
0.40
104.50
98.98
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
1
-6.06
0.70
102.20
96.14
A
A
A
C4'
C3'
C2'
DC
DC
DC
5
5
5
N
1
-5.41
0.80
105.90
100.49
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
1
11.73
0.30
108.30
120.03
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-3.94
0.40
104.50
100.56
A
A
A
O4'
C4'
C3'
DT
DT
DT
6
6
6
N
1
8.28
1.20
115.70
123.98
A
A
A
C5'
C4'
C3'
DT
DT
DT
6
6
6
N
1
11.02
0.30
108.30
119.32
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
-3.95
0.60
122.30
118.35
A
A
A
N3
C2
O2
DT
DT
DT
6
6
6
N
1
-4.55
0.60
122.90
118.35
A
A
A
C6
C5
C7
DT
DT
DT
6
6
6
N
1
-4.45
0.70
102.20
97.75
A
A
A
C4'
C3'
C2'
DT
DT
DT
7
7
7
N
1
-12.34
0.80
105.90
93.56
A
A
A
O4'
C1'
C2'
DT
DT
DT
7
7
7
N
1
10.87
0.30
108.30
119.17
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
-4.25
0.60
127.20
122.95
A
A
A
C2
N3
C4
DT
DT
DT
7
7
7
N
1
4.15
0.60
118.00
122.15
A
A
A
C4
C5
C6
DT
DT
DT
7
7
7
N
1
-6.58
0.60
122.90
116.32
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
1
-12.35
1.90
109.30
96.95
A
A
A
C5'
C4'
O4'
DC
DC
DC
8
8
8
N
1
14.39
0.30
108.30
122.69
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
-6.65
1.10
118.80
112.15
A
A
A
C2
N1
C1'
DC
DC
DC
8
8
8
N
1
9.78
1.40
114.30
124.08
B
B
B
N9
C1'
C2'
DG
DG
DG
9
9
9
N
1
10.34
0.30
108.30
118.64
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
-4.07
0.40
110.80
106.73
B
B
B
C4
C5
N7
DG
DG
DG
9
9
9
N
1
-4.14
0.40
106.40
102.26
B
B
B
C8
N9
C4
DG
DG
DG
9
9
9
N
1
5.31
0.40
105.40
110.71
B
B
B
N9
C4
C5
DG
DG
DG
9
9
9
N
1
-6.92
0.60
119.90
112.98
B
B
B
N1
C6
O6
DG
DG
DG
9
9
9
N
1
6.93
0.60
128.60
135.53
B
B
B
C5
C6
O6
DG
DG
DG
9
9
9
N
1
7.54
1.20
119.70
127.24
B
B
B
C3'
O3'
P
DG
DG
DA
9
9
10
Y
1
-5.00
0.80
109.40
104.40
B
B
B
O5'
C5'
C4'
DA
DA
DA
10
10
10
N
1
-6.85
0.40
104.50
97.65
B
B
B
O4'
C4'
C3'
DA
DA
DA
10
10
10
N
1
-13.07
1.90
109.30
96.23
B
B
B
C5'
C4'
O4'
DA
DA
DA
10
10
10
N
1
5.05
0.60
118.60
123.65
B
B
B
C6
N1
C2
DA
DA
DA
10
10
10
N
1
-4.24
0.50
129.30
125.06
B
B
B
N1
C2
N3
DA
DA
DA
10
10
10
N
1
2.66
0.40
105.80
108.46
B
B
B
N9
C4
C5
DA
DA
DA
10
10
10
N
1
-4.48
0.60
118.60
114.12
B
B
B
N1
C6
N6
DA
DA
DA
10
10
10
N
1
5.34
0.80
123.70
129.04
B
B
B
C5
C6
N6
DA
DA
DA
10
10
10
N
1
-12.58
0.40
104.50
91.92
B
B
B
O4'
C4'
C3'
DA
DA
DA
11
11
11
N
1
14.99
2.00
112.30
127.29
B
B
B
C4'
C3'
O3'
DA
DA
DA
11
11
11
N
1
-8.05
0.80
105.90
97.85
B
B
B
O4'
C1'
C2'
DA
DA
DA
11
11
11
N
1
10.59
0.30
108.30
118.89
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
1
4.90
0.60
118.60
123.50
B
B
B
C6
N1
C2
DA
DA
DA
11
11
11
N
1
-4.30
0.50
117.70
113.40
B
B
B
C5
C6
N1
DA
DA
DA
11
11
11
N
1
13.42
1.20
119.70
133.12
B
B
B
C3'
O3'
P
DA
DA
DG
11
11
12
Y
1
5.24
0.60
106.00
111.24
B
B
B
O4'
C4'
C3'
DG
DG
DG
12
12
12
N
1
-11.33
1.80
114.10
102.77
B
B
B
C5'
C4'
C3'
DG
DG
DG
12
12
12
N
1
8.40
1.10
109.80
118.20
B
B
B
C5'
C4'
O4'
DG
DG
DG
12
12
12
N
1
-6.35
0.70
102.20
95.85
B
B
B
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
1
10.89
1.20
102.50
113.39
B
B
B
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
1
-9.68
0.80
105.90
96.22
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
1
6.65
0.30
108.30
114.95
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
-4.10
0.50
111.90
107.80
B
B
B
C2
N3
C4
DG
DG
DG
12
12
12
N
1
4.96
0.60
118.80
123.76
B
B
B
C4
C5
C6
DG
DG
DG
12
12
12
N
1
5.93
0.40
110.80
116.73
B
B
B
C4
C5
N7
DG
DG
DG
12
12
12
N
1
-5.82
0.50
104.30
98.48
B
B
B
C5
N7
C8
DG
DG
DG
12
12
12
N
1
8.11
0.50
113.10
121.21
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
1
-3.24
0.40
106.40
103.16
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
1
-5.00
0.40
105.40
100.40
B
B
B
N9
C4
C5
DG
DG
DG
12
12
12
N
1
7.37
0.60
126.00
133.37
B
B
B
N3
C4
N9
DG
DG
DG
12
12
12
N
1
-10.90
0.60
130.40
119.50
B
B
B
C6
C5
N7
DG
DG
DG
12
12
12
N
1
-6.03
0.90
116.20
110.17
B
B
B
N1
C2
N2
DG
DG
DG
12
12
12
N
1
9.27
0.60
119.90
129.17
B
B
B
N1
C6
O6
DG
DG
DG
12
12
12
N
1
-10.91
0.60
128.60
117.69
B
B
B
C5
C6
O6
DG
DG
DG
12
12
12
N
1
9.23
1.30
126.50
135.73
B
B
B
C4
N9
C1'
DG
DG
DG
12
12
12
N
1
7.42
1.20
119.70
127.12
B
B
B
C3'
O3'
P
DG
DG
DC
12
12
13
Y
1
-7.04
0.70
102.20
95.16
B
B
B
C4'
C3'
C2'
DC
DC
DC
13
13
13
N
1
15.02
0.30
108.30
123.32
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
4.00
0.60
118.90
122.90
B
B
B
N1
C2
O2
DC
DC
DC
13
13
13
N
1
14.94
1.20
119.70
134.64
B
B
B
C3'
O3'
P
DC
DC
DT
13
13
14
Y
1
-4.56
0.40
104.50
99.94
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
1
8.31
1.20
115.70
124.01
B
B
B
C5'
C4'
C3'
DT
DT
DT
14
14
14
N
1
-7.31
1.00
110.10
102.79
B
B
B
C1'
O4'
C4'
DT
DT
DT
14
14
14
N
1
12.91
2.00
112.30
125.21
B
B
B
C4'
C3'
O3'
DT
DT
DT
14
14
14
N
1
-7.10
0.80
105.90
98.80
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
1
9.10
0.30
108.30
117.40
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
4.10
0.60
127.20
131.30
B
B
B
C2
N3
C4
DT
DT
DT
14
14
14
N
1
-3.90
0.60
122.90
119.00
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
1
12.98
1.10
109.80
122.78
B
B
B
C5'
C4'
O4'
DT
DT
DT
15
15
15
N
1
-10.63
1.00
110.10
99.47
B
B
B
C1'
O4'
C4'
DT
DT
DT
15
15
15
N
1
12.38
1.40
114.30
126.68
B
B
B
N1
C1'
C2'
DT
DT
DT
15
15
15
N
1
12.90
0.30
108.30
121.20
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
1
-4.41
0.60
122.30
117.89
B
B
B
N3
C2
O2
DT
DT
DT
15
15
15
N
1
-5.08
0.60
122.90
117.82
B
B
B
C6
C5
C7
DT
DT
DT
15
15
15
N
1
-4.54
0.40
104.50
99.96
B
B
B
O4'
C4'
C3'
DC
DC
DC
16
16
16
N
1
10.24
1.10
109.80
120.04
B
B
B
C5'
C4'
O4'
DC
DC
DC
16
16
16
N
1
11.73
1.40
114.30
126.03
B
B
B
N1
C1'
C2'
DC
DC
DC
16
16
16
N
1
19.11
0.30
108.30
127.41
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
1
-2.52
0.40
120.30
117.78
B
B
B
C6
N1
C2
DC
DC
DC
16
16
16
N
1
4.20
0.70
119.20
123.40
B
B
B
N1
C2
N3
DC
DC
DC
16
16
16
N
1
-5.88
0.70
121.90
116.02
B
B
B
N3
C2
O2
DC
DC
DC
16
16
16
N
1
10.42
1.50
110.90
121.32
C
C
C
CA
CB
CG2
DVA
DVA
DVA
2
2
2
N
1
A
A
C2'
C1'
DG
DG
1
1
-0.069
0.010
1.518
1.449
N
1
A
A
C5'
C4'
DA
DA
2
2
0.057
0.007
1.512
1.569
N
1
A
A
N9
C4
DA
DA
2
2
0.042
0.006
1.374
1.416
N
1
A
A
C4'
C3'
DA
DA
3
3
-0.062
0.010
1.521
1.459
N
1
A
A
C3'
C2'
DG
DG
4
4
-0.093
0.008
1.516
1.423
N
1
A
A
O3'
C3'
DG
DG
4
4
0.126
0.013
1.435
1.561
N
1
A
A
P
O5'
DC
DC
5
5
0.078
0.010
1.593
1.671
N
1
A
A
C5'
C4'
DC
DC
5
5
0.075
0.007
1.512
1.587
N
1
A
A
C4'
C3'
DC
DC
8
8
0.064
0.010
1.529
1.593
N
1
B
B
C5'
C4'
DG
DG
9
9
0.055
0.007
1.512
1.567
N
1
B
B
O3'
P
DG
DA
9
10
0.104
0.012
1.607
1.711
Y
1
B
B
C6
N1
DA
DA
10
10
-0.043
0.007
1.351
1.308
N
1
B
B
O4'
C1'
DA
DA
11
11
0.076
0.011
1.420
1.496
N
1
B
B
C4'
C3'
DG
DG
12
12
-0.078
0.010
1.521
1.443
N
1
B
B
O3'
C3'
DG
DG
12
12
0.118
0.013
1.435
1.553
N
1
B
B
C2
N3
DG
DG
12
12
0.057
0.008
1.323
1.380
N
1
B
B
C5
C6
DG
DG
12
12
-0.086
0.010
1.419
1.333
N
1
B
B
C5
N7
DG
DG
12
12
-0.048
0.006
1.388
1.340
N
1
B
B
N7
C8
DG
DG
12
12
-0.067
0.006
1.305
1.238
N
1
B
B
P
O5'
DC
DC
13
13
0.142
0.010
1.593
1.735
N
1
B
B
C2'
C1'
DC
DC
13
13
0.069
0.010
1.519
1.588
N
1
B
B
P
O5'
DT
DT
14
14
0.117
0.010
1.593
1.710
N
1
B
B
C5'
C4'
DT
DT
14
14
0.045
0.007
1.512
1.557
N
1
B
B
P
O5'
DC
DC
16
16
0.102
0.010
1.593
1.695
N
1
B
B
C5'
C4'
DC
DC
16
16
0.087
0.007
1.512
1.599
N
1
C
C
C11
C11
PXZ
PXZ
6
6
2.16
1_555
2_555
1
D
DVA
8
-16.04
-95.07
0.202
0.202
3.00
8.00
1016
1
2.000
3.00
8.00
96
512
0
322
94
0.037
5.90
3.000
173D
1016
1
refinement
X-PLOR
MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
covale
1.326
both
C
THR
1
C
C
THR
1
1_555
C
DVA
2
C
N
DVA
2
1_555
covale
1.400
one
C
THR
1
C
OG1
THR
1
1_555
C
MVA
5
C
C
MVA
5
1_555
covale
1.334
one
C
THR
1
C
N
THR
1
1_555
C
PXZ
6
C
C0
PXZ
6
1_555
covale
1.338
both
C
DVA
2
C
C
DVA
2
1_555
C
PRO
3
C
N
PRO
3
1_555
covale
1.378
both
C
PRO
3
C
C
PRO
3
1_555
C
SAR
4
C
N
SAR
4
1_555
covale
1.345
both
C
SAR
4
C
C
SAR
4
1_555
C
MVA
5
C
N
MVA
5
1_555
covale
1.310
none
C
PXZ
6
C
N10
PXZ
6
1_555
C
PXZ
6
C
C11
PXZ
6
2_555
covale
1.276
none
C
PXZ
6
C
O5
PXZ
6
1_555
C
PXZ
6
C
C12
PXZ
6
2_555
covale
1.425
none
D
PXZ
6
D
N10
PXZ
6
1_555
D
PXZ
6
D
C11
PXZ
6
14_555
covale
1.435
none
D
PXZ
6
D
O5
PXZ
6
1_555
D
PXZ
6
D
C12
PXZ
6
14_555
covale
1.366
one
D
PXZ
6
D
C0
PXZ
6
1_555
D
THR
7
D
N
THR
7
1_555
covale
1.353
both
D
THR
7
D
C
THR
7
1_555
D
DVA
8
D
N
DVA
8
1_555
covale
1.394
one
D
THR
7
D
OG1
THR
7
1_555
D
MVA
11
D
C
MVA
11
1_555
covale
1.354
both
D
DVA
8
D
C
DVA
8
1_555
D
PRO
9
D
N
PRO
9
1_555
covale
1.365
both
D
PRO
9
D
C
PRO
9
1_555
D
SAR
10
D
N
SAR
10
1_555
covale
1.365
both
D
SAR
10
D
C
SAR
10
1_555
D
MVA
11
D
N
MVA
11
1_555
DNA/ANTIBIOTIC
ACTINOMYCIN, ANTIBIOTIC, ANTITUMOR, ANTICANCER, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX
C
DVA
2
C
DVA
2
1
C
PRO
3
C
PRO
3
-4.23
C
PRO
3
C
PRO
3
1
C
SAR
4
C
SAR
4
3.45
D
DVA
8
D
DVA
8
1
D
PRO
9
D
PRO
9
-16.94
D
PRO
9
D
PRO
9
1
D
SAR
10
D
SAR
10
3.51
173D
PDB
1
173D
NOR00228
NOR
2
NOR00228
1
8
173D
1
8
173D
A
1
1
8
9
16
173D
9
16
173D
B
1
1
8
1
11
173D
1
11
NOR00228
C
2
1
11
1
11
173D
1
11
NOR00228
D
2
1
11
BINDING SITE FOR CHAIN C OF ACTINOMYCIN D
Software
9
BINDING SITE FOR CHAIN D OF ACTINOMYCIN D
Software
9
A
DG
4
A
DG
4
9
1_555
A
DG
4
A
DG
4
9
2_555
A
DC
5
A
DC
5
9
2_555
A
DC
5
A
DC
5
9
1_555
A
DT
6
A
DT
6
9
2_555
B
DA
11
B
DA
3
9
3_555
C
HOH
2004
G
HOH
9
1_555
C
HOH
2005
G
HOH
9
1_555
C
HOH
2006
G
HOH
9
1_555
B
DG
12
B
DG
4
9
1_555
B
DG
12
B
DG
4
9
14_555
B
DC
13
B
DC
5
9
1_555
B
DC
13
B
DC
5
9
14_555
B
DT
14
B
DT
6
9
14_555
B
DT
15
B
DT
7
9
14_555
B
HOH
2025
F
HOH
9
1_555
D
HOH
2005
H
HOH
9
1_555
D
HOH
2009
H
HOH
9
1_555
22
F 2 2 2