0.008410
0.000000
0.000000
0.000000
0.008410
0.000000
0.000000
0.000000
0.025641
0.00000
0.00000
0.00000
Matsumura, M.
Weaver, L.
Zhang, X.-J.
Matthews, B.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
118.900
118.900
39.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
250
527
552
10.1006/jmbi.1995.0396
7616572
Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme.
1995
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
193
189
Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution
1987
10.2210/pdb178l/pdb
pdb_0000178l
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
290
1
AREA DETECTOR
1992-01-07
XUONG-HAMLIN MULTIWIRE
Graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
18562.367
T4 LYSOZYME
3.2.1.17
C54T, C97A, D127C, R154C
1
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
18.015
water
8
nat
water
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWCEAAVNLAKSRWYNQTPNRAKRVITTFCTGTWDA
YKNL
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWCEAAVNLAKSRWYNQTPNRAKRVITTFCTGTWDA
YKNL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
sample
E
10665
Bacteriophage T4
PLASMID
M13
1
3.71
66.87
pdbx_database_status
struct_conf
struct_conf_type
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Database references
Derived calculations
1
0
1995-07-10
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
1
4
2021-11-03
_pdbx_database_status.process_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-03-24
REL
REL
CL
CHLORIDE ION
HOH
water
CL
189
2
CL
CL
189
A
CL
321
2
CL
CL
321
A
HOH
179
3
HOH
HOH
179
A
HOH
208
3
HOH
HOH
208
A
HOH
226
3
HOH
HOH
226
A
HOH
235
3
HOH
HOH
235
A
HOH
282
3
HOH
HOH
282
A
HOH
298
3
HOH
HOH
298
A
HOH
320
3
HOH
HOH
320
A
HOH
322
3
HOH
HOH
322
A
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
THR
54
n
54
THR
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
ILE
100
n
100
ILE
100
A
ASN
101
n
101
ASN
101
A
MET
102
n
102
MET
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
MET
106
n
106
MET
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
VAL
111
n
111
VAL
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
MET
120
n
120
MET
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
CYS
127
n
127
CYS
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
PHE
153
n
153
PHE
153
A
CYS
154
n
154
CYS
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
LYS
162
n
162
LYS
162
A
n
163
163
A
n
164
164
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
25
A
O
TYR
25
A
N
THR
34
A
N
THR
34
1
A
ASN
163
A
ASN
163
1
Y
1
A
LEU
164
A
LEU
164
1
Y
1
A
CA
CYS
127
PLANAR
1
5.84
0.90
118.30
124.14
A
A
A
CB
CG
OD1
ASP
ASP
ASP
20
20
20
N
1
-5.98
0.90
118.30
112.32
A
A
A
CB
CG
OD2
ASP
ASP
ASP
20
20
20
N
1
-13.86
2.10
128.40
114.54
A
A
A
C
N
CD
SER
PRO
PRO
36
37
37
Y
1
-5.80
0.90
118.30
112.50
A
A
A
CB
CG
OD2
ASP
ASP
ASP
61
61
61
N
1
5.92
0.90
118.30
124.22
A
A
A
CB
CG
OD1
ASP
ASP
ASP
70
70
70
N
1
-6.78
0.90
118.30
111.52
A
A
A
CB
CG
OD2
ASP
ASP
ASP
70
70
70
N
1
-6.51
0.90
118.30
111.79
A
A
A
CB
CG
OD2
ASP
ASP
ASP
72
72
72
N
1
3.41
0.50
120.30
123.71
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
76
76
76
N
1
8.59
1.20
111.50
120.09
A
A
A
CB
CA
C
CYS
CYS
CYS
127
127
127
N
1
-17.13
2.10
128.40
111.27
A
A
A
C
N
CD
THR
PRO
PRO
142
143
143
Y
1
A
A
CD
OE2
GLU
GLU
22
22
0.068
0.011
1.252
1.320
N
1
A
A
CD
OE2
GLU
GLU
64
64
0.068
0.011
1.252
1.320
N
1
A
A
CD
OE2
GLU
GLU
128
128
0.074
0.011
1.252
1.326
N
1
A
ASP
20
-65.85
-167.45
1
A
GLU
22
-92.62
32.06
1
A
LYS
48
-57.69
-75.00
1
A
ARG
52
179.42
179.27
1
A
ASN
68
-45.94
-17.62
1
A
ARG
119
-52.61
-70.66
1
A
LYS
124
80.68
20.03
1
A
ARG
125
-95.75
57.62
MUTANT SPACE GROUP, P 42(1)2, IS NON-ISOMORPHOUS TO WILD
TYPE. STARTING COORDINATES WERE BASED ON THE WILD TYPE
STRUCTURE.
0.192
2.71
19.5
6596
81
1
0.0
MOLECULAR REPLACEMENT
2.71
19.5
8
1295
2
0
1285
0.015
2.2
2.71
19.5
178L
6596
1
81
refinement
TNT
data reduction
Xuong-Hamlin
data scaling
Rotovata/Agrovata
phasing
MRX
Protein flexibility and adaptability seen in 25 crystal forms of T4 LYSOZYME
1
N
N
2
N
N
2
N
N
3
N
N
A
ILE
3
A
ILE
3
HELX_P
A
GLU
11
A
GLU
11
1
H1
9
A
LEU
39
A
LEU
39
HELX_P
A
ILE
50
A
ILE
50
1
H2
12
A
LYS
60
A
LYS
60
HELX_P
A
ARG
80
A
ARG
80
1
H3
21
A
ALA
82
A
ALA
82
HELX_P
A
SER
90
A
SER
90
1
H4
9
A
ALA
93
A
ALA
93
HELX_P
A
MET
106
A
MET
106
1
H5
14
A
GLU
108
A
GLU
108
HELX_P
SEE REF. 1 FOR DETAILS
A
GLY
113
A
GLY
113
1
H6
6
A
THR
115
A
THR
115
HELX_P
A
GLN
123
A
GLN
123
1
H7
9
A
TRP
126
A
TRP
126
HELX_P
A
ALA
134
A
ALA
134
1
H8
9
A
ARG
137
A
ARG
137
HELX_P
A
GLN
141
A
GLN
141
1
H9
5
A
PRO
143
A
PRO
143
HELX_P
A
THR
155
A
THR
155
1
H10
13
disulf
2.120
A
CYS
127
A
SG
CYS
127
1_555
A
CYS
154
A
SG
CYS
154
1_555
HYDROLASE
HYDROLASE (O-GLYCOSYL), HYDROLASE
LYS_BPT4
UNP
1
1
P00720
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
1
164
178L
1
164
P00720
A
1
1
164
1
CYS
engineered mutation
THR
54
178L
A
P00720
UNP
54
54
1
CYS
engineered mutation
ALA
97
178L
A
P00720
UNP
97
97
1
ASP
engineered mutation
CYS
127
178L
A
P00720
UNP
127
127
1
ARG
engineered mutation
CYS
154
178L
A
P00720
UNP
154
154
2
anti-parallel
A
TYR
25
A
TYR
25
A
ILE
27
A
ILE
27
A
HIS
31
A
HIS
31
A
THR
34
A
THR
34
BINDING SITE FOR RESIDUE CL A 189
A
CL
189
Software
1
BINDING SITE FOR RESIDUE CL A 321
A
CL
321
Software
2
A
LEU
15
A
LEU
15
1
1_555
A
THR
115
A
THR
115
2
1_555
A
ASN
116
A
ASN
116
2
1_555
90
P 4 21 2