0.008410 0.000000 0.000000 0.000000 0.008410 0.000000 0.000000 0.000000 0.025641 0.00000 0.00000 0.00000 Matsumura, M. Weaver, L. Zhang, X.-J. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 118.900 118.900 39.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 250 527 552 10.1006/jmbi.1995.0396 7616572 Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme. 1995 UK J.Mol.Biol. JMOBAK 0070 0022-2836 193 189 Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution 1987 10.2210/pdb178l/pdb pdb_0000178l 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 290 1 AREA DETECTOR 1992-01-07 XUONG-HAMLIN MULTIWIRE Graphite SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 18562.367 T4 LYSOZYME 3.2.1.17 C54T, C97A, D127C, R154C 1 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 8 nat water no no MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWCEAAVNLAKSRWYNQTPNRAKRVITTFCTGTWDA YKNL MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWCEAAVNLAKSRWYNQTPNRAKRVITTFCTGTWDA YKNL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n T4-like viruses Enterobacteria phage T4 sensu lato sample E 10665 Bacteriophage T4 PLASMID M13 1 3.71 66.87 pdbx_database_status struct_conf struct_conf_type database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Derived calculations Other Database references Derived calculations 1 0 1995-07-10 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 1 4 2021-11-03 _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1995-03-24 REL REL CL CHLORIDE ION HOH water CL 189 2 CL CL 189 A CL 321 2 CL CL 321 A HOH 179 3 HOH HOH 179 A HOH 208 3 HOH HOH 208 A HOH 226 3 HOH HOH 226 A HOH 235 3 HOH HOH 235 A HOH 282 3 HOH HOH 282 A HOH 298 3 HOH HOH 298 A HOH 320 3 HOH HOH 320 A HOH 322 3 HOH HOH 322 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A THR 21 n 21 THR 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A THR 54 n 54 THR 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A ALA 97 n 97 ALA 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A MET 102 n 102 MET 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLN 105 n 105 GLN 105 A MET 106 n 106 MET 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A SER 117 n 117 SER 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A MET 120 n 120 MET 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A CYS 127 n 127 CYS 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A THR 142 n 142 THR 142 A PRO 143 n 143 PRO 143 A ASN 144 n 144 ASN 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A VAL 149 n 149 VAL 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A PHE 153 n 153 PHE 153 A CYS 154 n 154 CYS 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A n 163 163 A n 164 164 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 25 A O TYR 25 A N THR 34 A N THR 34 1 A ASN 163 A ASN 163 1 Y 1 A LEU 164 A LEU 164 1 Y 1 A CA CYS 127 PLANAR 1 5.84 0.90 118.30 124.14 A A A CB CG OD1 ASP ASP ASP 20 20 20 N 1 -5.98 0.90 118.30 112.32 A A A CB CG OD2 ASP ASP ASP 20 20 20 N 1 -13.86 2.10 128.40 114.54 A A A C N CD SER PRO PRO 36 37 37 Y 1 -5.80 0.90 118.30 112.50 A A A CB CG OD2 ASP ASP ASP 61 61 61 N 1 5.92 0.90 118.30 124.22 A A A CB CG OD1 ASP ASP ASP 70 70 70 N 1 -6.78 0.90 118.30 111.52 A A A CB CG OD2 ASP ASP ASP 70 70 70 N 1 -6.51 0.90 118.30 111.79 A A A CB CG OD2 ASP ASP ASP 72 72 72 N 1 3.41 0.50 120.30 123.71 A A A NE CZ NH1 ARG ARG ARG 76 76 76 N 1 8.59 1.20 111.50 120.09 A A A CB CA C CYS CYS CYS 127 127 127 N 1 -17.13 2.10 128.40 111.27 A A A C N CD THR PRO PRO 142 143 143 Y 1 A A CD OE2 GLU GLU 22 22 0.068 0.011 1.252 1.320 N 1 A A CD OE2 GLU GLU 64 64 0.068 0.011 1.252 1.320 N 1 A A CD OE2 GLU GLU 128 128 0.074 0.011 1.252 1.326 N 1 A ASP 20 -65.85 -167.45 1 A GLU 22 -92.62 32.06 1 A LYS 48 -57.69 -75.00 1 A ARG 52 179.42 179.27 1 A ASN 68 -45.94 -17.62 1 A ARG 119 -52.61 -70.66 1 A LYS 124 80.68 20.03 1 A ARG 125 -95.75 57.62 MUTANT SPACE GROUP, P 42(1)2, IS NON-ISOMORPHOUS TO WILD TYPE. STARTING COORDINATES WERE BASED ON THE WILD TYPE STRUCTURE. 0.192 2.71 19.5 6596 81 1 0.0 MOLECULAR REPLACEMENT 2.71 19.5 8 1295 2 0 1285 0.015 2.2 2.71 19.5 178L 6596 1 81 refinement TNT data reduction Xuong-Hamlin data scaling Rotovata/Agrovata phasing MRX Protein flexibility and adaptability seen in 25 crystal forms of T4 LYSOZYME 1 N N 2 N N 2 N N 3 N N A ILE 3 A ILE 3 HELX_P A GLU 11 A GLU 11 1 H1 9 A LEU 39 A LEU 39 HELX_P A ILE 50 A ILE 50 1 H2 12 A LYS 60 A LYS 60 HELX_P A ARG 80 A ARG 80 1 H3 21 A ALA 82 A ALA 82 HELX_P A SER 90 A SER 90 1 H4 9 A ALA 93 A ALA 93 HELX_P A MET 106 A MET 106 1 H5 14 A GLU 108 A GLU 108 HELX_P SEE REF. 1 FOR DETAILS A GLY 113 A GLY 113 1 H6 6 A THR 115 A THR 115 HELX_P A GLN 123 A GLN 123 1 H7 9 A TRP 126 A TRP 126 HELX_P A ALA 134 A ALA 134 1 H8 9 A ARG 137 A ARG 137 HELX_P A GLN 141 A GLN 141 1 H9 5 A PRO 143 A PRO 143 HELX_P A THR 155 A THR 155 1 H10 13 disulf 2.120 A CYS 127 A SG CYS 127 1_555 A CYS 154 A SG CYS 154 1_555 HYDROLASE HYDROLASE (O-GLYCOSYL), HYDROLASE LYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL 1 164 178L 1 164 P00720 A 1 1 164 1 CYS engineered mutation THR 54 178L A P00720 UNP 54 54 1 CYS engineered mutation ALA 97 178L A P00720 UNP 97 97 1 ASP engineered mutation CYS 127 178L A P00720 UNP 127 127 1 ARG engineered mutation CYS 154 178L A P00720 UNP 154 154 2 anti-parallel A TYR 25 A TYR 25 A ILE 27 A ILE 27 A HIS 31 A HIS 31 A THR 34 A THR 34 BINDING SITE FOR RESIDUE CL A 189 A CL 189 Software 1 BINDING SITE FOR RESIDUE CL A 321 A CL 321 Software 2 A LEU 15 A LEU 15 1 1_555 A THR 115 A THR 115 2 1_555 A ASN 116 A ASN 116 2 1_555 90 P 4 21 2