0.056338
0.032592
0.000000
0.000000
0.065050
0.000000
0.000000
0.000000
0.023381
0.00000
0.00000
0.00000
Sadasivan, C.
Gautham, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
90.00
120.05
17.750
17.760
42.770
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
248
918
930
10.1006/jmbi.1995.9894
7760333
Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG).
1995
To be Published
0353
Plasticity of Z-DNA as Observed in the Crystal Structures of Non- Selfcomplementary Hexanucleotides
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
50
192
196
Space Group Degeneracy in the Packing of a Non-Selfcomplementary Z-DNA Hexamer
1994
10.2210/pdb180d/pdb
pdb_0000180d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
296.00
1
DIFFRACTOMETER
ENRAF-NONIUS CAD4
x-ray
1
1.0
1794.206
DNA (5'-D(*CP*GP*CP*AP*CP*G)-3')
1
syn
polymer
1825.216
DNA (5'-D(*CP*GP*TP*GP*CP*G)-3')
1
syn
polymer
18.015
water
21
nat
water
no
no
(DC)(DG)(DC)(DA)(DC)(DG)
CGCACG
A
polydeoxyribonucleotide
no
no
(DC)(DG)(DT)(DG)(DC)(DG)
CGTGCG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
1.61
23.71
VAPOR DIFFUSION, HANGING DROP
6.80
pH 6.80, VAPOR DIFFUSION, HANGING DROP
ROOM TEMPERATURE
WATER
1
NA CACODYLATE
1
BACL2
1
WATER
2
MPD
2
-6.019
1
19
A
1
B
12
0.652
A_DC1:DG12_B
1
7.440
-0.025
-0.808
-0.159
0.045
1
19
A
2
B
11
3.959
A_DG2:DC11_B
2
-6.134
0.068
-0.131
-0.163
-10.964
1
19
A
3
B
10
7.261
A_DC3:DG10_B
3
-3.240
-0.848
0.098
-0.431
-3.128
1
20
A
4
B
9
3.630
A_DA4:DT9_B
4
5.257
-0.231
-0.302
0.024
7.224
1
19
A
5
B
8
5.529
A_DC5:DG8_B
5
-6.098
-0.228
-1.186
-0.285
0.200
1
19
A
6
B
7
4.468
A_DG6:DC7_B
6
5.247
0.064
0.597
-0.132
1.694
-16.737
A
A
1
2
-10.889
B
B
12
11
2.989
3.117
-0.300
5.788
AA_DC1DG2:DC11DG12_BB
1
-4.223
-14.755
-15.898
-21.410
-3.100
4.034
-45.952
A
A
2
3
7.521
B
B
11
10
4.244
-5.848
0.486
-1.705
AA_DG2DC3:DG10DC11_BB
2
-4.623
-5.946
-45.375
2.827
0.115
3.256
-21.180
A
A
3
4
1.419
B
B
10
9
3.127
-0.520
0.044
6.469
AA_DC3DA4:DT9DG10_BB
3
2.547
6.946
-21.021
-17.389
1.157
3.624
-44.864
A
A
4
5
-4.811
B
B
9
8
3.469
3.666
1.194
-1.376
AA_DA4DC5:DG8DT9_BB
4
-2.529
-3.318
-44.654
1.442
1.315
-0.982
-9.199
A
A
5
6
-19.006
B
B
8
7
3.553
2.210
-0.857
4.021
AA_DC5DG6:DC7DG8_BB
5
-8.692
-74.758
-2.052
-28.219
-17.722
diffrn_detector
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Data collection
Database references
1
0
1995-07-19
1
1
2008-05-22
1
2
2011-07-13
1
3
2018-04-18
1
4
2024-02-07
_diffrn_detector.detector
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1994-07-19
REL
HOH
water
HOH
13
3
HOH
HOH
13
A
HOH
16
3
HOH
HOH
16
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
23
3
HOH
HOH
23
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
14
3
HOH
HOH
14
B
HOH
15
3
HOH
HOH
15
B
HOH
17
3
HOH
HOH
17
B
HOH
22
3
HOH
HOH
22
B
HOH
24
3
HOH
HOH
24
B
HOH
28
3
HOH
HOH
28
B
HOH
31
3
HOH
HOH
31
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
A
4
n
4
DA
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
C
7
n
1
DC
7
B
G
8
n
2
DG
8
B
T
9
n
3
DT
9
B
G
10
n
4
DG
10
B
C
11
n
5
DC
11
B
G
12
n
6
DG
12
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-5.33
0.40
104.50
99.17
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
1
4.79
0.60
118.90
123.69
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
1
10.72
1.20
119.70
130.42
A
A
A
C3'
O3'
P
DC
DC
DG
1
1
2
Y
1
7.64
1.10
110.50
118.14
A
A
A
O3'
P
OP1
DC
DG
DG
1
2
2
Y
1
-5.97
0.90
105.70
99.73
A
A
A
O5'
P
OP1
DG
DG
DG
2
2
2
N
1
3.80
0.30
108.30
112.10
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
3.02
0.50
111.50
114.52
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
23.47
1.20
119.70
143.17
A
A
A
C3'
O3'
P
DG
DG
DC
2
2
3
Y
1
10.45
1.10
110.50
120.95
A
A
A
O3'
P
OP1
DG
DC
DC
2
3
3
Y
1
-15.43
1.50
119.60
104.17
A
A
A
OP1
P
OP2
DC
DC
DC
3
3
3
N
1
-13.57
1.60
120.90
107.33
A
A
A
P
O5'
C5'
DC
DC
DC
3
3
3
N
1
1.93
0.30
108.30
110.23
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
5.63
0.70
118.00
123.63
A
A
A
N3
C4
N4
DC
DC
DC
3
3
3
N
1
13.77
1.20
119.70
133.47
A
A
A
C3'
O3'
P
DC
DC
DA
3
3
4
Y
1
13.69
1.50
119.60
133.29
A
A
A
OP1
P
OP2
DA
DA
DA
4
4
4
N
1
-6.76
0.80
109.40
102.64
A
A
A
O5'
C5'
C4'
DA
DA
DA
4
4
4
N
1
-15.69
1.60
120.90
105.21
A
A
A
P
O5'
C5'
DA
DA
DA
4
4
4
N
1
-4.06
0.50
129.30
125.24
A
A
A
N1
C2
N3
DA
DA
DA
4
4
4
N
1
26.32
1.20
119.70
146.02
A
A
A
C3'
O3'
P
DA
DA
DC
4
4
5
Y
1
-13.71
1.50
119.60
105.89
A
A
A
OP1
P
OP2
DC
DC
DC
5
5
5
N
1
4.26
0.30
108.30
112.56
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
5.09
0.60
118.90
123.99
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
1
42.92
1.20
119.70
162.62
A
A
A
C3'
O3'
P
DC
DC
DG
5
5
6
Y
1
13.66
1.10
110.50
124.16
A
A
A
O3'
P
OP2
DC
DG
DG
5
6
6
Y
1
8.80
1.10
110.50
119.30
A
A
A
O3'
P
OP1
DC
DG
DG
5
6
6
Y
1
-9.58
1.50
119.60
110.02
A
A
A
OP1
P
OP2
DG
DG
DG
6
6
6
N
1
-8.05
0.80
109.40
101.35
A
A
A
O5'
C5'
C4'
DG
DG
DG
6
6
6
N
1
-4.15
0.40
104.50
100.35
A
A
A
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
1
6.37
0.30
108.30
114.67
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
-3.71
0.60
125.10
121.39
A
A
A
C6
N1
C2
DG
DG
DG
6
6
6
N
1
3.12
0.50
111.50
114.62
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
4.59
0.30
108.30
112.89
B
B
B
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
3.71
0.60
118.90
122.61
B
B
B
N1
C2
O2
DC
DC
DC
7
7
7
N
1
20.42
1.20
119.70
140.12
B
B
B
C3'
O3'
P
DC
DC
DG
7
7
8
Y
1
1.93
0.30
108.30
110.23
B
B
B
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
-4.11
0.60
125.10
120.99
B
B
B
C6
N1
C2
DG
DG
DG
8
8
8
N
1
3.85
0.50
111.50
115.35
B
B
B
C5
C6
N1
DG
DG
DG
8
8
8
N
1
3.29
0.30
108.30
111.59
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
4.19
0.60
114.60
118.79
B
B
B
N1
C2
N3
DT
DT
DT
9
9
9
N
1
-5.27
0.60
127.20
121.93
B
B
B
C2
N3
C4
DT
DT
DT
9
9
9
N
1
32.47
1.20
119.70
152.17
B
B
B
C3'
O3'
P
DT
DT
DG
9
9
10
Y
1
-6.88
0.70
108.00
101.12
B
B
B
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-16.48
1.60
120.90
104.42
B
B
B
P
O5'
C5'
DC
DC
DC
11
11
11
N
1
2.60
0.30
108.30
110.90
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
-14.53
2.20
105.20
90.67
B
B
B
O3'
P
OP2
DC
DG
DG
11
12
12
Y
1
8.75
1.20
110.70
119.45
B
B
B
O5'
P
OP2
DG
DG
DG
12
12
12
N
1
-4.67
0.60
125.10
120.43
B
B
B
C6
N1
C2
DG
DG
DG
12
12
12
N
1
3.56
0.50
111.50
115.06
B
B
B
C5
C6
N1
DG
DG
DG
12
12
12
N
1
A
A
P
O5'
DG
DG
2
2
0.087
0.010
1.593
1.680
N
1
A
A
O3'
P
DG
DC
2
3
-0.104
0.012
1.607
1.503
Y
1
A
A
P
O5'
DC
DC
3
3
0.068
0.010
1.593
1.661
N
1
A
A
P
O5'
DA
DA
4
4
0.073
0.010
1.593
1.666
N
1
A
A
P
O5'
DG
DG
6
6
0.080
0.010
1.593
1.673
N
1
B
B
P
O5'
DG
DG
8
8
0.068
0.010
1.593
1.661
N
1
B
B
P
O5'
DC
DC
11
11
0.117
0.010
1.593
1.710
N
1
B
B
O3'
P
DC
DG
11
12
0.102
0.012
1.607
1.709
Y
0.1610000
2.500
10.000
530
1
2.000
2.500
10.000
21
261
0
240
0
5.500
2.000
8.000
3.000
12.760
4.000
10.210
5.000
0.010
0.020
0.026
0.030
0.071
0.050
0.070
0.070
0.005
0.020
0.038
0.030
0.069
0.010
0.093
0.010
refinement
NUCLSQ
SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG)
1
N
N
2
N
N
3
N
N
3
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
9
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
9
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
7
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
7
B
N4
DC
1
1_555
DNA
Z-DNA, DOUBLE HELIX, DNA
180D
PDB
1
180D
180D
PDB
2
180D
1
6
180D
1
6
180D
A
1
1
6
7
12
180D
7
12
180D
B
2
1
6
4
P 1 1 21