0.056338 0.032592 0.000000 0.000000 0.065050 0.000000 0.000000 0.000000 0.023381 0.00000 0.00000 0.00000 Sadasivan, C. Gautham, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 90.00 120.05 17.750 17.760 42.770 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 248 918 930 10.1006/jmbi.1995.9894 7760333 Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). 1995 To be Published 0353 Plasticity of Z-DNA as Observed in the Crystal Structures of Non- Selfcomplementary Hexanucleotides DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 50 192 196 Space Group Degeneracy in the Packing of a Non-Selfcomplementary Z-DNA Hexamer 1994 10.2210/pdb180d/pdb pdb_0000180d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 296.00 1 DIFFRACTOMETER ENRAF-NONIUS CAD4 x-ray 1 1.0 1794.206 DNA (5'-D(*CP*GP*CP*AP*CP*G)-3') 1 syn polymer 1825.216 DNA (5'-D(*CP*GP*TP*GP*CP*G)-3') 1 syn polymer 18.015 water 21 nat water no no (DC)(DG)(DC)(DA)(DC)(DG) CGCACG A polydeoxyribonucleotide no no (DC)(DG)(DT)(DG)(DC)(DG) CGTGCG B polydeoxyribonucleotide n n n n n n n n n n n n 1.61 23.71 VAPOR DIFFUSION, HANGING DROP 6.80 pH 6.80, VAPOR DIFFUSION, HANGING DROP ROOM TEMPERATURE WATER 1 NA CACODYLATE 1 BACL2 1 WATER 2 MPD 2 -6.019 1 19 A 1 B 12 0.652 A_DC1:DG12_B 1 7.440 -0.025 -0.808 -0.159 0.045 1 19 A 2 B 11 3.959 A_DG2:DC11_B 2 -6.134 0.068 -0.131 -0.163 -10.964 1 19 A 3 B 10 7.261 A_DC3:DG10_B 3 -3.240 -0.848 0.098 -0.431 -3.128 1 20 A 4 B 9 3.630 A_DA4:DT9_B 4 5.257 -0.231 -0.302 0.024 7.224 1 19 A 5 B 8 5.529 A_DC5:DG8_B 5 -6.098 -0.228 -1.186 -0.285 0.200 1 19 A 6 B 7 4.468 A_DG6:DC7_B 6 5.247 0.064 0.597 -0.132 1.694 -16.737 A A 1 2 -10.889 B B 12 11 2.989 3.117 -0.300 5.788 AA_DC1DG2:DC11DG12_BB 1 -4.223 -14.755 -15.898 -21.410 -3.100 4.034 -45.952 A A 2 3 7.521 B B 11 10 4.244 -5.848 0.486 -1.705 AA_DG2DC3:DG10DC11_BB 2 -4.623 -5.946 -45.375 2.827 0.115 3.256 -21.180 A A 3 4 1.419 B B 10 9 3.127 -0.520 0.044 6.469 AA_DC3DA4:DT9DG10_BB 3 2.547 6.946 -21.021 -17.389 1.157 3.624 -44.864 A A 4 5 -4.811 B B 9 8 3.469 3.666 1.194 -1.376 AA_DA4DC5:DG8DT9_BB 4 -2.529 -3.318 -44.654 1.442 1.315 -0.982 -9.199 A A 5 6 -19.006 B B 8 7 3.553 2.210 -0.857 4.021 AA_DC5DG6:DC7DG8_BB 5 -8.692 -74.758 -2.052 -28.219 -17.722 diffrn_detector chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Data collection Database references 1 0 1995-07-19 1 1 2008-05-22 1 2 2011-07-13 1 3 2018-04-18 1 4 2024-02-07 _diffrn_detector.detector _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1994-07-19 REL HOH water HOH 13 3 HOH HOH 13 A HOH 16 3 HOH HOH 16 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 23 3 HOH HOH 23 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 14 3 HOH HOH 14 B HOH 15 3 HOH HOH 15 B HOH 17 3 HOH HOH 17 B HOH 22 3 HOH HOH 22 B HOH 24 3 HOH HOH 24 B HOH 28 3 HOH HOH 28 B HOH 31 3 HOH HOH 31 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A A 4 n 4 DA 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 7 n 1 DC 7 B G 8 n 2 DG 8 B T 9 n 3 DT 9 B G 10 n 4 DG 10 B C 11 n 5 DC 11 B G 12 n 6 DG 12 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -5.33 0.40 104.50 99.17 A A A O4' C4' C3' DC DC DC 1 1 1 N 1 4.79 0.60 118.90 123.69 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 10.72 1.20 119.70 130.42 A A A C3' O3' P DC DC DG 1 1 2 Y 1 7.64 1.10 110.50 118.14 A A A O3' P OP1 DC DG DG 1 2 2 Y 1 -5.97 0.90 105.70 99.73 A A A O5' P OP1 DG DG DG 2 2 2 N 1 3.80 0.30 108.30 112.10 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 3.02 0.50 111.50 114.52 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 23.47 1.20 119.70 143.17 A A A C3' O3' P DG DG DC 2 2 3 Y 1 10.45 1.10 110.50 120.95 A A A O3' P OP1 DG DC DC 2 3 3 Y 1 -15.43 1.50 119.60 104.17 A A A OP1 P OP2 DC DC DC 3 3 3 N 1 -13.57 1.60 120.90 107.33 A A A P O5' C5' DC DC DC 3 3 3 N 1 1.93 0.30 108.30 110.23 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 5.63 0.70 118.00 123.63 A A A N3 C4 N4 DC DC DC 3 3 3 N 1 13.77 1.20 119.70 133.47 A A A C3' O3' P DC DC DA 3 3 4 Y 1 13.69 1.50 119.60 133.29 A A A OP1 P OP2 DA DA DA 4 4 4 N 1 -6.76 0.80 109.40 102.64 A A A O5' C5' C4' DA DA DA 4 4 4 N 1 -15.69 1.60 120.90 105.21 A A A P O5' C5' DA DA DA 4 4 4 N 1 -4.06 0.50 129.30 125.24 A A A N1 C2 N3 DA DA DA 4 4 4 N 1 26.32 1.20 119.70 146.02 A A A C3' O3' P DA DA DC 4 4 5 Y 1 -13.71 1.50 119.60 105.89 A A A OP1 P OP2 DC DC DC 5 5 5 N 1 4.26 0.30 108.30 112.56 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 5.09 0.60 118.90 123.99 A A A N1 C2 O2 DC DC DC 5 5 5 N 1 42.92 1.20 119.70 162.62 A A A C3' O3' P DC DC DG 5 5 6 Y 1 13.66 1.10 110.50 124.16 A A A O3' P OP2 DC DG DG 5 6 6 Y 1 8.80 1.10 110.50 119.30 A A A O3' P OP1 DC DG DG 5 6 6 Y 1 -9.58 1.50 119.60 110.02 A A A OP1 P OP2 DG DG DG 6 6 6 N 1 -8.05 0.80 109.40 101.35 A A A O5' C5' C4' DG DG DG 6 6 6 N 1 -4.15 0.40 104.50 100.35 A A A O4' C4' C3' DG DG DG 6 6 6 N 1 6.37 0.30 108.30 114.67 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -3.71 0.60 125.10 121.39 A A A C6 N1 C2 DG DG DG 6 6 6 N 1 3.12 0.50 111.50 114.62 A A A C5 C6 N1 DG DG DG 6 6 6 N 1 4.59 0.30 108.30 112.89 B B B O4' C1' N1 DC DC DC 7 7 7 N 1 3.71 0.60 118.90 122.61 B B B N1 C2 O2 DC DC DC 7 7 7 N 1 20.42 1.20 119.70 140.12 B B B C3' O3' P DC DC DG 7 7 8 Y 1 1.93 0.30 108.30 110.23 B B B O4' C1' N9 DG DG DG 8 8 8 N 1 -4.11 0.60 125.10 120.99 B B B C6 N1 C2 DG DG DG 8 8 8 N 1 3.85 0.50 111.50 115.35 B B B C5 C6 N1 DG DG DG 8 8 8 N 1 3.29 0.30 108.30 111.59 B B B O4' C1' N1 DT DT DT 9 9 9 N 1 4.19 0.60 114.60 118.79 B B B N1 C2 N3 DT DT DT 9 9 9 N 1 -5.27 0.60 127.20 121.93 B B B C2 N3 C4 DT DT DT 9 9 9 N 1 32.47 1.20 119.70 152.17 B B B C3' O3' P DT DT DG 9 9 10 Y 1 -6.88 0.70 108.00 101.12 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 -16.48 1.60 120.90 104.42 B B B P O5' C5' DC DC DC 11 11 11 N 1 2.60 0.30 108.30 110.90 B B B O4' C1' N1 DC DC DC 11 11 11 N 1 -14.53 2.20 105.20 90.67 B B B O3' P OP2 DC DG DG 11 12 12 Y 1 8.75 1.20 110.70 119.45 B B B O5' P OP2 DG DG DG 12 12 12 N 1 -4.67 0.60 125.10 120.43 B B B C6 N1 C2 DG DG DG 12 12 12 N 1 3.56 0.50 111.50 115.06 B B B C5 C6 N1 DG DG DG 12 12 12 N 1 A A P O5' DG DG 2 2 0.087 0.010 1.593 1.680 N 1 A A O3' P DG DC 2 3 -0.104 0.012 1.607 1.503 Y 1 A A P O5' DC DC 3 3 0.068 0.010 1.593 1.661 N 1 A A P O5' DA DA 4 4 0.073 0.010 1.593 1.666 N 1 A A P O5' DG DG 6 6 0.080 0.010 1.593 1.673 N 1 B B P O5' DG DG 8 8 0.068 0.010 1.593 1.661 N 1 B B P O5' DC DC 11 11 0.117 0.010 1.593 1.710 N 1 B B O3' P DC DG 11 12 0.102 0.012 1.607 1.709 Y 0.1610000 2.500 10.000 530 1 2.000 2.500 10.000 21 261 0 240 0 5.500 2.000 8.000 3.000 12.760 4.000 10.210 5.000 0.010 0.020 0.026 0.030 0.071 0.050 0.070 0.070 0.005 0.020 0.038 0.030 0.069 0.010 0.093 0.010 refinement NUCLSQ SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG) 1 N N 2 N N 3 N N 3 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 12 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 12 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 12 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 11 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 11 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 11 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 10 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 10 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 10 B N2 DG 4 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 9 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 9 B O4 DT 3 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 8 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 7 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 7 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 7 B N4 DC 1 1_555 DNA Z-DNA, DOUBLE HELIX, DNA 180D PDB 1 180D 180D PDB 2 180D 1 6 180D 1 6 180D A 1 1 6 7 12 180D 7 12 180D B 2 1 6 4 P 1 1 21