0.016420 0.009480 0.000000 0.000000 0.018961 0.000000 0.000000 0.000000 0.010309 0.00000 0.00000 0.00000 Morton, A. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 60.900 60.900 97.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H6 78.112 BENZENE non-polymer Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C4 H10 O2 S2 154.251 2-HYDROXYETHYL DISULFIDE non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H Y 74 N C Y 75 N C Y 76 N C Y 77 N C Y 78 N C Y 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N CL N 87 N N N 88 R C N 89 N C N 90 N O N 91 N C N 92 N S N 93 N O N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N N N 102 S C N 103 N C N 104 N O N 105 N C N 106 N C N 107 N C N 108 N O N 109 N N N 110 N O N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N N N 122 S C N 123 N C N 124 N O N 125 N C N 126 N C N 127 N C N 128 N O N 129 N O N 130 N O N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 N C N 142 N C N 143 N O N 144 N O N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N C N 151 N O N 152 N C N 153 N S N 154 N S N 155 N C N 156 N C N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N N N 169 S C N 170 N C N 171 N O N 172 N C Y 173 N C Y 174 N N Y 175 N C Y 176 N C Y 177 N N N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N O N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 S C N 197 N C N 198 N C N 199 N C N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N N N 215 S C N 216 N C N 217 N O N 218 N C N 219 N C N 220 N C N 221 N C N 222 N O N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C N 241 N C N 242 N C N 243 N C N 244 N N N 245 N O N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N S N 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C Y 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N C N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C N 326 N O N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 R C N 340 N O N 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N N Y 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing Y 70 N doub Y 71 N sing N 72 N sing Y 73 N sing N 74 N sing Y 75 N doub N 76 N sing Y 77 N sing N 78 N sing Y 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing Y 169 N sing Y 170 N doub Y 171 N doub N 172 N sing Y 173 N sing N 174 N sing Y 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N sing Y 279 N sing N 280 N sing Y 281 N doub N 282 N sing Y 283 N doub N 284 N sing Y 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing Y 346 N doub Y 347 N sing Y 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing US Biochemistry BICHAW 0033 0006-2960 34 8576 8588 10.1021/bi00027a007 7612599 Specificity of ligand binding in a buried nonpolar cavity of T4 lysozyme: linkage of dynamics and structural plasticity. 1995 US Biochemistry BICHAW 0033 0006-2960 34 8564 8575 10.1021/bi00027a006 7612598 Energetic origins of specificity of ligand binding in an interior nonpolar cavity of T4 lysozyme. 1995 UK J.Mol.Biol. JMOBAK 0070 0022-2836 193 189 Structure of Bacteriophage T4 Lysozyme Refined at 1.7 Angstroms Resolution 1987 10.2210/pdb181l/pdb pdb_0000181l 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 18586.283 T4 LYSOZYME 3.2.1.17 1 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 154.251 2-HYDROXYETHYL DISULFIDE 1 syn non-polymer 78.112 BENZENE 1 syn non-polymer 18.015 water 136 nat water no no MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n T4-like viruses Enterobacteria phage T4 sensu lato sample 10665 Enterobacteria phage T4 PLASMID M13 2.79 55.97 pdbx_database_status struct_conf struct_conf_type chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Other Derived calculations Other Data collection Database references Derived calculations 1 0 1995-07-10 1 1 2008-03-03 1 2 2011-07-13 1 3 2011-08-10 1 4 2017-11-29 1 5 2024-02-07 _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1995-04-19 REL REL CL CHLORIDE ION HED 2-HYDROXYETHYL DISULFIDE BNZ BENZENE HOH water THE L99A BINDING SITE IS OCCUPIED BY BENZOFURAN. CL 173 2 CL CL 173 A CL 178 2 CL CL 178 A HED 170 3 HED HED 170 A BNZ 400 4 BNZ BNZ 400 A HOH 171 5 HOH HOH 171 A HOH 172 5 HOH HOH 172 A HOH 174 5 HOH HOH 174 A HOH 175 5 HOH HOH 175 A HOH 176 5 HOH HOH 176 A HOH 177 5 HOH HOH 177 A HOH 179 5 HOH HOH 179 A HOH 180 5 HOH HOH 180 A HOH 181 5 HOH HOH 181 A HOH 182 5 HOH HOH 182 A HOH 183 5 HOH HOH 183 A HOH 184 5 HOH HOH 184 A HOH 185 5 HOH HOH 185 A HOH 186 5 HOH HOH 186 A HOH 187 5 HOH HOH 187 A HOH 188 5 HOH HOH 188 A HOH 189 5 HOH HOH 189 A HOH 190 5 HOH HOH 190 A HOH 191 5 HOH HOH 191 A HOH 192 5 HOH HOH 192 A HOH 193 5 HOH HOH 193 A HOH 194 5 HOH HOH 194 A HOH 195 5 HOH HOH 195 A HOH 196 5 HOH HOH 196 A HOH 197 5 HOH HOH 197 A HOH 198 5 HOH HOH 198 A HOH 200 5 HOH HOH 200 A HOH 201 5 HOH HOH 201 A HOH 202 5 HOH HOH 202 A HOH 203 5 HOH HOH 203 A HOH 204 5 HOH HOH 204 A HOH 206 5 HOH HOH 206 A HOH 207 5 HOH HOH 207 A HOH 208 5 HOH HOH 208 A HOH 209 5 HOH HOH 209 A HOH 210 5 HOH HOH 210 A HOH 211 5 HOH HOH 211 A HOH 212 5 HOH HOH 212 A HOH 213 5 HOH HOH 213 A HOH 214 5 HOH HOH 214 A HOH 215 5 HOH HOH 215 A HOH 216 5 HOH HOH 216 A HOH 217 5 HOH HOH 217 A HOH 218 5 HOH HOH 218 A HOH 219 5 HOH HOH 219 A HOH 220 5 HOH HOH 220 A HOH 221 5 HOH HOH 221 A HOH 222 5 HOH HOH 222 A HOH 223 5 HOH HOH 223 A HOH 224 5 HOH HOH 224 A HOH 225 5 HOH HOH 225 A HOH 226 5 HOH HOH 226 A HOH 227 5 HOH HOH 227 A HOH 228 5 HOH HOH 228 A HOH 229 5 HOH HOH 229 A HOH 230 5 HOH HOH 230 A HOH 231 5 HOH HOH 231 A HOH 232 5 HOH HOH 232 A HOH 233 5 HOH HOH 233 A HOH 234 5 HOH HOH 234 A HOH 235 5 HOH HOH 235 A HOH 236 5 HOH HOH 236 A HOH 237 5 HOH HOH 237 A HOH 238 5 HOH HOH 238 A HOH 239 5 HOH HOH 239 A HOH 240 5 HOH HOH 240 A HOH 242 5 HOH HOH 242 A HOH 244 5 HOH HOH 244 A HOH 245 5 HOH HOH 245 A HOH 246 5 HOH HOH 246 A HOH 247 5 HOH HOH 247 A HOH 248 5 HOH HOH 248 A HOH 249 5 HOH HOH 249 A HOH 250 5 HOH HOH 250 A HOH 251 5 HOH HOH 251 A HOH 253 5 HOH HOH 253 A HOH 254 5 HOH HOH 254 A HOH 256 5 HOH HOH 256 A HOH 259 5 HOH HOH 259 A HOH 260 5 HOH HOH 260 A HOH 261 5 HOH HOH 261 A HOH 262 5 HOH HOH 262 A HOH 263 5 HOH HOH 263 A HOH 265 5 HOH HOH 265 A HOH 266 5 HOH HOH 266 A HOH 267 5 HOH HOH 267 A HOH 268 5 HOH HOH 268 A HOH 269 5 HOH HOH 269 A HOH 270 5 HOH HOH 270 A HOH 271 5 HOH HOH 271 A HOH 272 5 HOH HOH 272 A HOH 273 5 HOH HOH 273 A HOH 274 5 HOH HOH 274 A HOH 276 5 HOH HOH 276 A HOH 277 5 HOH HOH 277 A HOH 278 5 HOH HOH 278 A HOH 279 5 HOH HOH 279 A HOH 280 5 HOH HOH 280 A HOH 281 5 HOH HOH 281 A HOH 282 5 HOH HOH 282 A HOH 283 5 HOH HOH 283 A HOH 284 5 HOH HOH 284 A HOH 285 5 HOH HOH 285 A HOH 286 5 HOH HOH 286 A HOH 288 5 HOH HOH 288 A HOH 289 5 HOH HOH 289 A HOH 290 5 HOH HOH 290 A HOH 292 5 HOH HOH 292 A HOH 293 5 HOH HOH 293 A HOH 294 5 HOH HOH 294 A HOH 295 5 HOH HOH 295 A HOH 296 5 HOH HOH 296 A HOH 297 5 HOH HOH 297 A HOH 298 5 HOH HOH 298 A HOH 299 5 HOH HOH 299 A HOH 300 5 HOH HOH 300 A HOH 301 5 HOH HOH 301 A HOH 302 5 HOH HOH 302 A HOH 303 5 HOH HOH 303 A HOH 306 5 HOH HOH 306 A HOH 307 5 HOH HOH 307 A HOH 308 5 HOH HOH 308 A HOH 311 5 HOH HOH 311 A HOH 312 5 HOH HOH 312 A HOH 313 5 HOH HOH 313 A HOH 314 5 HOH HOH 314 A HOH 315 5 HOH HOH 315 A HOH 318 5 HOH HOH 318 A HOH 321 5 HOH HOH 321 A HOH 322 5 HOH HOH 322 A HOH 323 5 HOH HOH 323 A HOH 324 5 HOH HOH 324 A HOH 325 5 HOH HOH 325 A HOH 326 5 HOH HOH 326 A HOH 327 5 HOH HOH 327 A HOH 328 5 HOH HOH 328 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A THR 21 n 21 THR 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A THR 54 n 54 THR 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A ALA 97 n 97 ALA 97 A ALA 98 n 98 ALA 98 A ALA 99 n 99 ALA 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A MET 102 n 102 MET 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLN 105 n 105 GLN 105 A MET 106 n 106 MET 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A SER 117 n 117 SER 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A MET 120 n 120 MET 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A THR 142 n 142 THR 142 A PRO 143 n 143 PRO 143 A ASN 144 n 144 ASN 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A VAL 149 n 149 VAL 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A PHE 153 n 153 PHE 153 A ARG 154 n 154 ARG 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A n 163 163 A n 164 164 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 25 A O TYR 25 A N THR 34 A N THR 34 1 A ASN 163 A ASN 163 1 Y 1 A LEU 164 A LEU 164 1 Y 1 8.27 0.90 118.30 126.57 A A A CB CG OD1 ASP ASP ASP 47 47 47 N 1 -8.29 0.90 118.30 110.01 A A A CB CG OD2 ASP ASP ASP 47 47 47 N 1 7.55 0.90 118.30 125.85 A A A CB CG OD1 ASP ASP ASP 70 70 70 N 1 -6.94 0.90 118.30 111.36 A A A CB CG OD2 ASP ASP ASP 70 70 70 N 1 -6.17 0.90 118.30 112.13 A A A CB CG OD1 ASP ASP ASP 72 72 72 N 1 5.63 0.90 118.30 123.93 A A A CB CG OD2 ASP ASP ASP 72 72 72 N 1 3.53 0.50 120.30 123.83 A A A NE CZ NH1 ARG ARG ARG 80 80 80 N 1 -3.17 0.50 120.30 117.13 A A A NE CZ NH2 ARG ARG ARG 80 80 80 N 1 -5.88 0.90 118.30 112.42 A A A CB CG OD1 ASP ASP ASP 89 89 89 N 1 -5.96 0.90 118.30 112.34 A A A CB CG OD1 ASP ASP ASP 92 92 92 N 1 6.06 0.90 118.30 124.36 A A A CB CG OD1 ASP ASP ASP 127 127 127 N 1 3.19 0.50 120.30 123.49 A A A NE CZ NH2 ARG ARG ARG 148 148 148 N 1 A A CD OE2 GLU GLU 5 5 0.070 0.011 1.252 1.322 N 1 A ILE 29 -102.73 70.44 1 A PHE 114 -88.64 44.40 0.1580000 1.80 20.0 14844 1 0.0 1.80 20.0 136 1441 16 0 1289 0.014 2.0 refinement TNT SPECIFICITY OF LIGAND BINDING IN A BURIED NON-POLAR CAVITY OF T4 LYSOZYME: LINKAGE OF DYNAMICS AND STRUCTURAL PLASTICITY 1 N N 2 N N 2 N N 3 N N 4 N N 5 N N A ILE 3 A ILE 3 HELX_P A GLU 11 A GLU 11 1 H1 9 A LEU 39 A LEU 39 HELX_P A ILE 50 A ILE 50 1 H2 12 A LYS 60 A LYS 60 HELX_P A ARG 80 A ARG 80 1 H3 21 A ALA 82 A ALA 82 HELX_P A SER 90 A SER 90 1 H4 9 A ALA 93 A ALA 93 HELX_P A MET 106 A MET 106 1 H5 14 A GLU 108 A GLU 108 HELX_P SEE REF. 1 FOR DETAILS A GLY 113 A GLY 113 1 H6 6 A THR 115 A THR 115 HELX_P A GLN 123 A GLN 123 1 H7 9 A TRP 126 A TRP 126 HELX_P A ALA 134 A ALA 134 1 H8 9 A ARG 137 A ARG 137 HELX_P A GLN 141 A GLN 141 1 H9 5 A PRO 143 A PRO 143 HELX_P A THR 155 A THR 155 1 H10 13 HYDROLASE (O-GLYCOSYL) HYDROLASE (O-GLYCOSYL) LYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL 1 164 181L 1 164 P00720 A 1 1 164 1 CYS conflict THR 54 181L A P00720 UNP 54 54 1 CYS conflict ALA 97 181L A P00720 UNP 97 97 1 LEU conflict ALA 99 181L A P00720 UNP 99 99 2 anti-parallel A TYR 25 A TYR 25 A ILE 27 A ILE 27 A HIS 31 A HIS 31 A THR 34 A THR 34 Unknown 17 BINDING SITE FOR RESIDUE CL A 173 A CL 173 Software 5 BINDING SITE FOR RESIDUE CL A 178 A CL 178 Software 2 BINDING SITE FOR RESIDUE HED A 170 A HED 170 Software 4 BINDING SITE FOR RESIDUE BNZ A 400 A BNZ 400 Software 5 A ILE 78 A ILE 78 17 1_555 A LEU 84 A LEU 84 17 1_555 A VAL 87 A VAL 87 17 1_555 A TYR 88 A TYR 88 17 1_555 A ALA 99 A ALA 99 17 1_555 A MET 102 A MET 102 17 1_555 A VAL 103 A VAL 103 17 1_555 A THR 109 A THR 109 17 1_555 A GLY 110 A GLY 110 17 1_555 A VAL 111 A VAL 111 17 1_555 A ALA 112 A ALA 112 17 1_555 A GLY 113 A GLY 113 17 1_555 A PHE 114 A PHE 114 17 1_555 A LEU 118 A LEU 118 17 1_555 A LEU 121 A LEU 121 17 1_555 A LEU 133 A LEU 133 17 1_555 A PHE 153 A PHE 153 17 1_555 A LYS 124 A LYS 124 5 4_655 A THR 142 A THR 142 5 1_555 A ASN 144 A ASN 144 5 1_555 A ARG 145 A ARG 145 5 1_555 A HOH 209 F HOH 5 1_555 A LYS 135 A LYS 135 2 3_665 A HOH 215 F HOH 2 1_555 A ASN 68 A ASN 68 4 5_555 A ASP 72 A ASP 72 4 5_555 A ALA 93 A ALA 93 4 1_555 A HOH 195 F HOH 4 1_555 A LEU 84 A LEU 84 5 1_555 A VAL 87 A VAL 87 5 1_555 A ALA 99 A ALA 99 5 1_555 A VAL 111 A VAL 111 5 1_555 A LEU 118 A LEU 118 5 1_555 154 P 32 2 1