0.026880
0.000000
0.000000
0.000000
0.026880
0.000000
0.000000
0.000000
0.014270
0.00000
0.00000
0.00000
Smith, C.K.
Davies, G.J.
Dodson, E.J.
Moore, M.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
37.200
37.200
70.100
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C39 H49 N O16
787.803
NOGALAMYCIN
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
Y
147
N
C
Y
148
N
C
Y
149
N
C
Y
150
N
C
N
151
N
C
Y
152
N
C
N
153
S
C
N
154
N
C
N
155
S
C
N
156
R
C
Y
157
N
C
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
C
Y
162
N
C
Y
163
N
C
Y
164
N
C
Y
165
N
C
Y
166
N
C
Y
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
C
N
176
S
C
N
177
S
C
N
178
R
C
N
179
R
C
N
180
R
C
N
181
R
C
N
182
R
C
N
183
R
C
N
184
S
C
N
185
S
C
N
186
N
N
N
187
N
O
N
188
N
O
N
189
N
O
N
190
N
O
N
191
N
O
N
192
N
O
N
193
N
O
N
194
N
O
N
195
N
O
N
196
N
O
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
O
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
doub
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
Y
157
N
doub
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
Y
164
N
doub
Y
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
Y
195
N
doub
Y
196
N
sing
Y
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
34
415
425
10.1021/bi00002a005
7819233
DNA-nogalamycin interactions: the crystal structure of d(TGATCA) complexed with nogalamycin.
1995
10.2210/pdb182d/pdb
pdb_0000182d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277.00
1
IMAGE PLATE
HENDRIX-LENTFER
x-ray
1
1.0
X31
EMBL/DESY, HAMBURG
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X31
1808.229
DNA (5'-D(*TP*GP*AP*TP*CP*A)-3')
2
syn
polymer
787.803
NOGALAMYCIN
2
syn
non-polymer
18.015
water
115
nat
water
no
no
(DT)(DG)(DA)(DT)(DC)(DA)
TGATCA
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
3.24
48.0000
VAPOR DIFFUSION, SITTING DROP
6.50
pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K
277.00
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
SPERMINE
1
WATER
2
MPD
2
12.049
1
20
A
1
B
12
2.851
A_DT1:DA12_B
1
0.562
-0.058
-0.126
-0.164
-25.174
1
19
A
2
B
11
-2.837
A_DG2:DC11_B
2
4.748
-0.388
-0.426
-0.256
-4.397
1
20
A
3
B
10
1.912
A_DA3:DT10_B
3
-2.558
-0.052
0.169
-0.129
6.232
1
20
A
4
B
9
1.069
A_DT4:DA9_B
4
-3.333
0.004
-0.117
-0.219
25.194
1
19
A
5
B
8
-0.285
A_DC5:DG8_B
5
2.613
0.409
-0.464
-0.234
-8.038
1
20
A
6
B
7
-1.342
A_DA6:DT7_B
6
1.824
0.016
0.149
-0.232
7.183
32.636
A
A
1
2
2.410
B
B
12
11
7.140
1.328
1.341
0.233
AA_DT1DG2:DC11DA12_BB
1
11.130
-20.195
30.701
-0.106
1.982
3.068
30.811
A
A
2
3
5.828
B
B
11
10
3.013
3.077
-0.440
0.386
AA_DG2DA3:DT10DC11_BB
2
-5.290
10.020
30.211
0.163
-0.142
3.305
33.780
A
A
3
4
-11.300
B
B
10
9
3.240
-6.521
0.049
-0.678
AA_DA3DT4:DA9DT10_BB
3
2.496
-4.325
33.071
-0.099
0.325
3.125
30.943
A
A
4
5
10.812
B
B
9
8
3.069
5.719
0.423
0.433
AA_DT4DC5:DG8DA9_BB
4
4.322
-8.171
30.121
-0.250
0.010
6.983
36.499
A
A
5
6
-3.992
B
B
8
7
7.049
-2.441
-1.249
0.307
AA_DC5DA6:DT7DG8_BB
5
-13.712
22.425
33.821
1.245
-2.242
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1994-11-30
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1994-07-28
REL
REL
NGM
NOGALAMYCIN
HOH
water
NGM
14
2
NGM
NGM
14
A
NGM
13
2
NGM
NGM
13
B
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
HOH
45
3
HOH
HOH
45
A
HOH
46
3
HOH
HOH
46
A
HOH
49
3
HOH
HOH
49
A
HOH
53
3
HOH
HOH
53
A
HOH
54
3
HOH
HOH
54
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
57
3
HOH
HOH
57
A
HOH
59
3
HOH
HOH
59
A
HOH
60
3
HOH
HOH
60
A
HOH
61
3
HOH
HOH
61
A
HOH
62
3
HOH
HOH
62
A
HOH
64
3
HOH
HOH
64
A
HOH
65
3
HOH
HOH
65
A
HOH
66
3
HOH
HOH
66
A
HOH
67
3
HOH
HOH
67
A
HOH
68
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
70
3
HOH
HOH
70
A
HOH
73
3
HOH
HOH
73
A
HOH
80
3
HOH
HOH
80
A
HOH
82
3
HOH
HOH
82
A
HOH
84
3
HOH
HOH
84
A
HOH
85
3
HOH
HOH
85
A
HOH
87
3
HOH
HOH
87
A
HOH
88
3
HOH
HOH
88
A
HOH
89
3
HOH
HOH
89
A
HOH
93
3
HOH
HOH
93
A
HOH
94
3
HOH
HOH
94
A
HOH
95
3
HOH
HOH
95
A
HOH
98
3
HOH
HOH
98
A
HOH
100
3
HOH
HOH
100
A
HOH
102
3
HOH
HOH
102
A
HOH
107
3
HOH
HOH
107
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
120
3
HOH
HOH
120
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
127
3
HOH
HOH
127
A
HOH
17
3
HOH
HOH
17
B
HOH
18
3
HOH
HOH
18
B
HOH
19
3
HOH
HOH
19
B
HOH
22
3
HOH
HOH
22
B
HOH
23
3
HOH
HOH
23
B
HOH
24
3
HOH
HOH
24
B
HOH
25
3
HOH
HOH
25
B
HOH
26
3
HOH
HOH
26
B
HOH
27
3
HOH
HOH
27
B
HOH
28
3
HOH
HOH
28
B
HOH
33
3
HOH
HOH
33
B
HOH
34
3
HOH
HOH
34
B
HOH
35
3
HOH
HOH
35
B
HOH
36
3
HOH
HOH
36
B
HOH
37
3
HOH
HOH
37
B
HOH
38
3
HOH
HOH
38
B
HOH
39
3
HOH
HOH
39
B
HOH
40
3
HOH
HOH
40
B
HOH
41
3
HOH
HOH
41
B
HOH
47
3
HOH
HOH
47
B
HOH
48
3
HOH
HOH
48
B
HOH
50
3
HOH
HOH
50
B
HOH
51
3
HOH
HOH
51
B
HOH
52
3
HOH
HOH
52
B
HOH
58
3
HOH
HOH
58
B
HOH
63
3
HOH
HOH
63
B
HOH
71
3
HOH
HOH
71
B
HOH
72
3
HOH
HOH
72
B
HOH
74
3
HOH
HOH
74
B
HOH
75
3
HOH
HOH
75
B
HOH
76
3
HOH
HOH
76
B
HOH
77
3
HOH
HOH
77
B
HOH
78
3
HOH
HOH
78
B
HOH
79
3
HOH
HOH
79
B
HOH
81
3
HOH
HOH
81
B
HOH
83
3
HOH
HOH
83
B
HOH
86
3
HOH
HOH
86
B
HOH
90
3
HOH
HOH
90
B
HOH
91
3
HOH
HOH
91
B
HOH
92
3
HOH
HOH
92
B
HOH
96
3
HOH
HOH
96
B
HOH
97
3
HOH
HOH
97
B
HOH
99
3
HOH
HOH
99
B
HOH
101
3
HOH
HOH
101
B
HOH
103
3
HOH
HOH
103
B
HOH
104
3
HOH
HOH
104
B
HOH
105
3
HOH
HOH
105
B
HOH
106
3
HOH
HOH
106
B
HOH
108
3
HOH
HOH
108
B
HOH
111
3
HOH
HOH
111
B
HOH
112
3
HOH
HOH
112
B
HOH
118
3
HOH
HOH
118
B
HOH
119
3
HOH
HOH
119
B
HOH
121
3
HOH
HOH
121
B
HOH
124
3
HOH
HOH
124
B
HOH
125
3
HOH
HOH
125
B
HOH
126
3
HOH
HOH
126
B
HOH
128
3
HOH
HOH
128
B
HOH
129
3
HOH
HOH
129
B
T
1
n
1
DT
1
A
G
2
n
2
DG
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
A
6
n
6
DA
6
A
T
7
n
1
DT
7
B
G
8
n
2
DG
8
B
A
9
n
3
DA
9
B
T
10
n
4
DT
10
B
C
11
n
5
DC
11
B
A
12
n
6
DA
12
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O3'
DA
6
A
O3'
DA
6
1
Y
1
B
O5'
DA
12
B
O5'
DA
6
1
Y
1
A
C32
NGM
14
PLANAR
1
B
B
OP1
O
DT
HOH
10
105
2.04
1
3.81
0.50
121.30
125.11
A
A
A
C6
N1
C2
DT
DT
DT
1
1
1
N
1
-7.36
0.60
127.20
119.84
A
A
A
C2
N3
C4
DT
DT
DT
1
1
1
N
1
8.23
0.60
115.20
123.43
A
A
A
N3
C4
C5
DT
DT
DT
1
1
1
N
1
-5.92
0.60
123.70
117.78
A
A
A
C5
C6
N1
DT
DT
DT
1
1
1
N
1
-7.05
0.70
124.90
117.85
A
A
A
C5
C4
O4
DT
DT
DT
1
1
1
N
1
-4.52
0.60
119.00
114.48
A
A
A
C4
C5
C7
DT
DT
DT
1
1
1
N
1
5.13
0.60
122.90
128.03
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
1
10.63
1.50
119.60
130.23
A
A
A
OP1
P
OP2
DG
DG
DG
2
2
2
N
1
-5.82
0.90
105.70
99.88
A
A
A
O5'
P
OP1
DG
DG
DG
2
2
2
N
1
-5.19
0.80
105.90
100.71
A
A
A
O4'
C1'
C2'
DG
DG
DG
2
2
2
N
1
9.78
0.30
108.30
118.08
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-5.95
0.50
111.90
105.95
A
A
A
C2
N3
C4
DG
DG
DG
2
2
2
N
1
3.59
0.50
128.60
132.19
A
A
A
N3
C4
C5
DG
DG
DG
2
2
2
N
1
2.52
0.40
106.40
108.92
A
A
A
C8
N9
C4
DG
DG
DG
2
2
2
N
1
10.41
1.20
119.70
130.11
A
A
A
C3'
O3'
P
DG
DG
DA
2
2
3
Y
1
9.50
1.20
110.70
120.20
A
A
A
O5'
P
OP2
DA
DA
DA
3
3
3
N
1
7.02
1.10
109.80
116.82
A
A
A
C5'
C4'
O4'
DA
DA
DA
3
3
3
N
1
11.38
0.60
118.60
129.98
A
A
A
C6
N1
C2
DA
DA
DA
3
3
3
N
1
-3.94
0.50
129.30
125.36
A
A
A
N1
C2
N3
DA
DA
DA
3
3
3
N
1
-7.21
0.50
110.60
103.39
A
A
A
C2
N3
C4
DA
DA
DA
3
3
3
N
1
8.85
0.70
126.80
135.65
A
A
A
N3
C4
C5
DA
DA
DA
3
3
3
N
1
-9.72
0.50
117.70
107.98
A
A
A
C5
C6
N1
DA
DA
DA
3
3
3
N
1
3.51
0.50
110.70
114.21
A
A
A
C4
C5
N7
DA
DA
DA
3
3
3
N
1
-4.92
0.50
103.90
98.98
A
A
A
C5
N7
C8
DA
DA
DA
3
3
3
N
1
-2.46
0.40
105.80
103.34
A
A
A
N9
C4
C5
DA
DA
DA
3
3
3
N
1
-6.38
0.80
127.40
121.02
A
A
A
N3
C4
N9
DA
DA
DA
3
3
3
N
1
7.66
0.60
118.60
126.26
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
1
-7.10
0.80
109.40
102.30
A
A
A
O5'
C5'
C4'
DT
DT
DT
4
4
4
N
1
5.84
0.50
121.30
127.14
A
A
A
C6
N1
C2
DT
DT
DT
4
4
4
N
1
-7.72
0.60
127.20
119.48
A
A
A
C2
N3
C4
DT
DT
DT
4
4
4
N
1
9.58
0.60
115.20
124.78
A
A
A
N3
C4
C5
DT
DT
DT
4
4
4
N
1
-6.40
0.60
123.70
117.30
A
A
A
C5
C6
N1
DT
DT
DT
4
4
4
N
1
-6.03
0.60
119.90
113.87
A
A
A
N3
C4
O4
DT
DT
DT
4
4
4
N
1
13.04
0.60
119.00
132.04
A
A
A
C4
C5
C7
DT
DT
DT
4
4
4
N
1
-11.72
0.60
122.90
111.18
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
1
11.75
1.50
119.60
131.35
A
A
A
OP1
P
OP2
DC
DC
DC
5
5
5
N
1
-5.05
0.80
102.40
97.35
A
A
A
C3'
C2'
C1'
DC
DC
DC
5
5
5
N
1
8.89
0.30
108.30
117.19
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
3.12
0.40
120.30
123.42
A
A
A
C6
N1
C2
DC
DC
DC
5
5
5
N
1
4.16
0.60
118.60
122.76
A
A
A
C6
N1
C2
DA
DA
DA
6
6
6
N
1
-3.80
0.50
117.70
113.90
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
1
6.67
0.60
118.60
125.27
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
1
3.19
0.30
108.30
111.49
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
3.60
0.60
114.60
118.20
B
B
B
N1
C2
N3
DT
DT
DT
7
7
7
N
1
-5.64
0.60
127.20
121.56
B
B
B
C2
N3
C4
DT
DT
DT
7
7
7
N
1
5.00
0.60
115.20
120.20
B
B
B
N3
C4
C5
DT
DT
DT
7
7
7
N
1
-3.87
0.60
123.70
119.83
B
B
B
C5
C6
N1
DT
DT
DT
7
7
7
N
1
-6.15
0.80
123.10
116.95
B
B
B
N1
C2
O2
DT
DT
DT
7
7
7
N
1
-4.50
0.70
124.90
120.40
B
B
B
C5
C4
O4
DT
DT
DT
7
7
7
N
1
6.66
0.60
119.00
125.66
B
B
B
C4
C5
C7
DT
DT
DT
7
7
7
N
1
-7.55
0.60
122.90
115.35
B
B
B
C6
C5
C7
DT
DT
DT
7
7
7
N
1
-12.13
0.80
109.40
97.27
B
B
B
O5'
C5'
C4'
DG
DG
DG
8
8
8
N
1
-9.44
1.00
110.10
100.66
B
B
B
C1'
O4'
C4'
DG
DG
DG
8
8
8
N
1
-17.00
2.50
109.70
92.70
B
B
B
C4'
C3'
O3'
DG
DG
DG
8
8
8
N
1
-7.65
0.80
102.40
94.75
B
B
B
C3'
C2'
C1'
DG
DG
DG
8
8
8
N
1
3.15
0.50
106.80
109.95
B
B
B
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
1
5.05
0.50
104.30
109.35
B
B
B
C5
N7
C8
DG
DG
DG
8
8
8
N
1
-6.97
0.50
113.10
106.13
B
B
B
N7
C8
N9
DG
DG
DG
8
8
8
N
1
5.00
0.40
106.40
111.40
B
B
B
C8
N9
C4
DG
DG
DG
8
8
8
N
1
5.36
0.60
119.90
125.26
B
B
B
N1
C6
O6
DG
DG
DG
8
8
8
N
1
8.65
1.20
119.70
128.35
B
B
B
C3'
O3'
P
DG
DG
DA
8
8
9
Y
1
-5.29
0.80
109.40
104.11
B
B
B
O5'
C5'
C4'
DA
DA
DA
9
9
9
N
1
5.09
0.60
118.60
123.69
B
B
B
N1
C6
N6
DA
DA
DA
9
9
9
N
1
-8.42
1.20
119.70
111.28
B
B
B
C3'
O3'
P
DA
DA
DT
9
9
10
Y
1
13.33
1.20
110.70
124.03
B
B
B
O5'
P
OP2
DT
DT
DT
10
10
10
N
1
-7.22
0.80
109.40
102.18
B
B
B
O5'
C5'
C4'
DT
DT
DT
10
10
10
N
1
4.05
0.50
121.30
125.35
B
B
B
C6
N1
C2
DT
DT
DT
10
10
10
N
1
3.62
0.60
115.20
118.82
B
B
B
N3
C4
C5
DT
DT
DT
10
10
10
N
1
-5.14
0.60
123.70
118.56
B
B
B
C5
C6
N1
DT
DT
DT
10
10
10
N
1
10.88
0.60
119.00
129.88
B
B
B
C4
C5
C7
DT
DT
DT
10
10
10
N
1
-11.43
0.60
122.90
111.47
B
B
B
C6
C5
C7
DT
DT
DT
10
10
10
N
1
-9.41
0.80
109.40
99.99
B
B
B
O5'
C5'
C4'
DC
DC
DC
11
11
11
N
1
9.24
0.30
108.30
117.54
B
B
B
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
-2.75
0.40
120.30
117.55
B
B
B
C6
N1
C2
DC
DC
DC
11
11
11
N
1
5.96
0.50
119.90
125.86
B
B
B
C2
N3
C4
DC
DC
DC
11
11
11
N
1
-2.62
0.40
121.90
119.28
B
B
B
N3
C4
C5
DC
DC
DC
11
11
11
N
1
-3.22
0.50
117.40
114.18
B
B
B
C4
C5
C6
DC
DC
DC
11
11
11
N
1
6.51
0.50
121.00
127.51
B
B
B
C5
C6
N1
DC
DC
DC
11
11
11
N
1
-6.01
0.60
118.90
112.89
B
B
B
N1
C2
O2
DC
DC
DC
11
11
11
N
1
9.62
0.70
121.90
131.52
B
B
B
N3
C2
O2
DC
DC
DC
11
11
11
N
1
7.68
0.70
118.00
125.68
B
B
B
N3
C4
N4
DC
DC
DC
11
11
11
N
1
-5.17
0.70
120.20
115.03
B
B
B
C5
C4
N4
DC
DC
DC
11
11
11
N
1
7.27
1.20
120.80
128.07
B
B
B
C6
N1
C1'
DC
DC
DC
11
11
11
N
1
-9.13
1.50
119.60
110.47
B
B
B
OP1
P
OP2
DA
DA
DA
12
12
12
N
1
6.91
1.10
109.80
116.71
B
B
B
C5'
C4'
O4'
DA
DA
DA
12
12
12
N
1
7.74
0.60
118.60
126.34
B
B
B
C6
N1
C2
DA
DA
DA
12
12
12
N
1
-6.93
0.50
129.30
122.37
B
B
B
N1
C2
N3
DA
DA
DA
12
12
12
N
1
-4.05
0.50
117.70
113.65
B
B
B
C5
C6
N1
DA
DA
DA
12
12
12
N
1
-3.90
0.50
103.90
100.00
B
B
B
C5
N7
C8
DA
DA
DA
12
12
12
N
1
7.84
0.60
118.60
126.44
B
B
B
N1
C6
N6
DA
DA
DA
12
12
12
N
1
A
A
C5
C7
DT
DT
1
1
-0.189
0.006
1.496
1.307
N
1
A
A
O3'
P
DT
DG
1
2
0.091
0.012
1.607
1.698
Y
1
A
A
C2'
C1'
DG
DG
2
2
0.076
0.010
1.519
1.595
N
1
A
A
N3
C4
DG
DG
2
2
0.043
0.007
1.350
1.393
N
1
A
A
C5
N7
DA
DA
3
3
0.039
0.006
1.388
1.427
N
1
A
A
O3'
P
DA
DT
3
4
0.075
0.012
1.607
1.682
Y
1
A
A
C5
C7
DT
DT
4
4
-0.100
0.006
1.496
1.396
N
1
A
A
O3'
P
DT
DC
4
5
0.084
0.012
1.607
1.691
Y
1
A
A
O4'
C4'
DC
DC
5
5
-0.074
0.010
1.446
1.372
N
1
A
A
O3'
P
DC
DA
5
6
0.102
0.012
1.607
1.709
Y
1
A
A
O4'
C4'
DA
DA
6
6
-0.062
0.010
1.446
1.384
N
1
B
B
C5
C7
DT
DT
7
7
0.115
0.006
1.496
1.611
N
1
B
B
O3'
P
DT
DG
7
8
0.102
0.012
1.607
1.709
Y
1
B
B
C2'
C1'
DG
DG
8
8
0.063
0.010
1.519
1.582
N
1
B
B
O3'
P
DA
DT
9
10
0.116
0.012
1.607
1.723
Y
1
B
B
O4'
C4'
DT
DT
10
10
-0.068
0.010
1.446
1.378
N
1
B
B
C5
C7
DT
DT
10
10
0.109
0.006
1.496
1.605
N
1
B
B
O3'
P
DT
DC
10
11
0.115
0.012
1.607
1.722
Y
1
B
B
O3'
P
DC
DA
11
12
0.118
0.012
1.607
1.725
Y
1
B
B
C5
N7
DA
DA
12
12
0.038
0.006
1.388
1.426
N
30.00
0.3000000
0.1950000
1.800
10.000
4767
81.000
1
1.000
TR
isotropic
TR
isotropic
1.800
10.000
115
465
112
238
0
0.020
0.020
0.076
0.050
0.025
0.020
0.037
0.060
fix
fix
1.800
182D
4953
3.000
1
refinement
PROLSQ
DNA-NOGALAMYCIN INTERACTIONS: THE CRYSTAL STRUCTURE OF D(TGATCA) COMPLEXED WITH NOGALAMYCIN
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
hydrog
WATSON-CRICK
A
DT
1
A
N3
DT
1
1_555
B
DA
12
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
1
A
O4
DT
1
1_555
B
DA
12
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
10
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
10
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
9
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
9
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
7
B
N3
DT
1
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
7
B
O4
DT
1
1_555
DNA
RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA
182D
PDB
1
182D
1
6
182D
1
6
182D
A
1
1
6
7
12
182D
7
12
182D
B
1
1
6
BINDING SITE FOR RESIDUE NGM B 13
B
NGM
13
Software
14
BINDING SITE FOR RESIDUE NGM A 14
A
NGM
14
Software
10
A
DT
1
A
DT
1
14
6_555
A
DG
2
A
DG
2
14
6_555
A
DC
5
A
DC
5
14
1_555
A
DA
6
A
DA
6
14
1_555
B
DT
7
B
DT
1
14
1_555
B
DG
8
B
DG
2
14
1_555
B
DA
9
B
DA
3
14
1_555
B
DT
10
B
DT
4
14
1_555
B
HOH
50
F
HOH
14
1_555
B
HOH
52
F
HOH
14
1_555
B
HOH
58
F
HOH
14
1_555
B
HOH
75
F
HOH
14
1_555
B
HOH
76
F
HOH
14
4_554
B
HOH
81
F
HOH
14
1_555
A
DT
1
A
DT
1
10
1_555
A
DG
2
A
DG
2
10
1_555
A
DA
3
A
DA
3
10
1_555
A
DT
4
A
DT
4
10
1_555
A
HOH
21
E
HOH
10
1_555
A
HOH
43
E
HOH
10
1_555
A
HOH
94
E
HOH
10
1_555
B
DC
11
B
DC
5
10
1_555
B
DA
12
B
DA
6
10
1_555
B
HOH
48
F
HOH
10
1_555
92
P 41 21 2