0.026880 0.000000 0.000000 0.000000 0.026880 0.000000 0.000000 0.000000 0.014270 0.00000 0.00000 0.00000 Smith, C.K. Davies, G.J. Dodson, E.J. Moore, M.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 37.200 37.200 70.100 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C39 H49 N O16 787.803 NOGALAMYCIN non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H Y 147 N C Y 148 N C Y 149 N C Y 150 N C N 151 N C Y 152 N C N 153 S C N 154 N C N 155 S C N 156 R C Y 157 N C N 158 N C N 159 N C N 160 N C N 161 N C Y 162 N C Y 163 N C Y 164 N C Y 165 N C Y 166 N C Y 167 N C N 168 N C N 169 N C N 170 N C N 171 N C N 172 N C N 173 N C N 174 N C N 175 N C N 176 S C N 177 S C N 178 R C N 179 R C N 180 R C N 181 R C N 182 R C N 183 R C N 184 S C N 185 S C N 186 N N N 187 N O N 188 N O N 189 N O N 190 N O N 191 N O N 192 N O N 193 N O N 194 N O N 195 N O N 196 N O N 197 N O N 198 N O N 199 N O N 200 N O N 201 N O N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing Y 152 N doub Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub Y 164 N doub Y 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing Y 180 N sing Y 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing Y 195 N doub Y 196 N sing Y 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing US Biochemistry BICHAW 0033 0006-2960 34 415 425 10.1021/bi00002a005 7819233 DNA-nogalamycin interactions: the crystal structure of d(TGATCA) complexed with nogalamycin. 1995 10.2210/pdb182d/pdb pdb_0000182d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277.00 1 IMAGE PLATE HENDRIX-LENTFER x-ray 1 1.0 X31 EMBL/DESY, HAMBURG SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 1808.229 DNA (5'-D(*TP*GP*AP*TP*CP*A)-3') 2 syn polymer 787.803 NOGALAMYCIN 2 syn non-polymer 18.015 water 115 nat water no no (DT)(DG)(DA)(DT)(DC)(DA) TGATCA A,B polydeoxyribonucleotide n n n n n n 3.24 48.0000 VAPOR DIFFUSION, SITTING DROP 6.50 pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K 277.00 WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 SPERMINE 1 WATER 2 MPD 2 12.049 1 20 A 1 B 12 2.851 A_DT1:DA12_B 1 0.562 -0.058 -0.126 -0.164 -25.174 1 19 A 2 B 11 -2.837 A_DG2:DC11_B 2 4.748 -0.388 -0.426 -0.256 -4.397 1 20 A 3 B 10 1.912 A_DA3:DT10_B 3 -2.558 -0.052 0.169 -0.129 6.232 1 20 A 4 B 9 1.069 A_DT4:DA9_B 4 -3.333 0.004 -0.117 -0.219 25.194 1 19 A 5 B 8 -0.285 A_DC5:DG8_B 5 2.613 0.409 -0.464 -0.234 -8.038 1 20 A 6 B 7 -1.342 A_DA6:DT7_B 6 1.824 0.016 0.149 -0.232 7.183 32.636 A A 1 2 2.410 B B 12 11 7.140 1.328 1.341 0.233 AA_DT1DG2:DC11DA12_BB 1 11.130 -20.195 30.701 -0.106 1.982 3.068 30.811 A A 2 3 5.828 B B 11 10 3.013 3.077 -0.440 0.386 AA_DG2DA3:DT10DC11_BB 2 -5.290 10.020 30.211 0.163 -0.142 3.305 33.780 A A 3 4 -11.300 B B 10 9 3.240 -6.521 0.049 -0.678 AA_DA3DT4:DA9DT10_BB 3 2.496 -4.325 33.071 -0.099 0.325 3.125 30.943 A A 4 5 10.812 B B 9 8 3.069 5.719 0.423 0.433 AA_DT4DC5:DG8DA9_BB 4 4.322 -8.171 30.121 -0.250 0.010 6.983 36.499 A A 5 6 -3.992 B B 8 7 7.049 -2.441 -1.249 0.307 AA_DC5DA6:DT7DG8_BB 5 -13.712 22.425 33.821 1.245 -2.242 chem_comp_atom chem_comp_bond database_2 diffrn_source struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1994-11-30 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1994-07-28 REL REL NGM NOGALAMYCIN HOH water NGM 14 2 NGM NGM 14 A NGM 13 2 NGM NGM 13 B HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 42 3 HOH HOH 42 A HOH 43 3 HOH HOH 43 A HOH 44 3 HOH HOH 44 A HOH 45 3 HOH HOH 45 A HOH 46 3 HOH HOH 46 A HOH 49 3 HOH HOH 49 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 56 3 HOH HOH 56 A HOH 57 3 HOH HOH 57 A HOH 59 3 HOH HOH 59 A HOH 60 3 HOH HOH 60 A HOH 61 3 HOH HOH 61 A HOH 62 3 HOH HOH 62 A HOH 64 3 HOH HOH 64 A HOH 65 3 HOH HOH 65 A HOH 66 3 HOH HOH 66 A HOH 67 3 HOH HOH 67 A HOH 68 3 HOH HOH 68 A HOH 69 3 HOH HOH 69 A HOH 70 3 HOH HOH 70 A HOH 73 3 HOH HOH 73 A HOH 80 3 HOH HOH 80 A HOH 82 3 HOH HOH 82 A HOH 84 3 HOH HOH 84 A HOH 85 3 HOH HOH 85 A HOH 87 3 HOH HOH 87 A HOH 88 3 HOH HOH 88 A HOH 89 3 HOH HOH 89 A HOH 93 3 HOH HOH 93 A HOH 94 3 HOH HOH 94 A HOH 95 3 HOH HOH 95 A HOH 98 3 HOH HOH 98 A HOH 100 3 HOH HOH 100 A HOH 102 3 HOH HOH 102 A HOH 107 3 HOH HOH 107 A HOH 109 3 HOH HOH 109 A HOH 110 3 HOH HOH 110 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 115 3 HOH HOH 115 A HOH 116 3 HOH HOH 116 A HOH 117 3 HOH HOH 117 A HOH 120 3 HOH HOH 120 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 127 3 HOH HOH 127 A HOH 17 3 HOH HOH 17 B HOH 18 3 HOH HOH 18 B HOH 19 3 HOH HOH 19 B HOH 22 3 HOH HOH 22 B HOH 23 3 HOH HOH 23 B HOH 24 3 HOH HOH 24 B HOH 25 3 HOH HOH 25 B HOH 26 3 HOH HOH 26 B HOH 27 3 HOH HOH 27 B HOH 28 3 HOH HOH 28 B HOH 33 3 HOH HOH 33 B HOH 34 3 HOH HOH 34 B HOH 35 3 HOH HOH 35 B HOH 36 3 HOH HOH 36 B HOH 37 3 HOH HOH 37 B HOH 38 3 HOH HOH 38 B HOH 39 3 HOH HOH 39 B HOH 40 3 HOH HOH 40 B HOH 41 3 HOH HOH 41 B HOH 47 3 HOH HOH 47 B HOH 48 3 HOH HOH 48 B HOH 50 3 HOH HOH 50 B HOH 51 3 HOH HOH 51 B HOH 52 3 HOH HOH 52 B HOH 58 3 HOH HOH 58 B HOH 63 3 HOH HOH 63 B HOH 71 3 HOH HOH 71 B HOH 72 3 HOH HOH 72 B HOH 74 3 HOH HOH 74 B HOH 75 3 HOH HOH 75 B HOH 76 3 HOH HOH 76 B HOH 77 3 HOH HOH 77 B HOH 78 3 HOH HOH 78 B HOH 79 3 HOH HOH 79 B HOH 81 3 HOH HOH 81 B HOH 83 3 HOH HOH 83 B HOH 86 3 HOH HOH 86 B HOH 90 3 HOH HOH 90 B HOH 91 3 HOH HOH 91 B HOH 92 3 HOH HOH 92 B HOH 96 3 HOH HOH 96 B HOH 97 3 HOH HOH 97 B HOH 99 3 HOH HOH 99 B HOH 101 3 HOH HOH 101 B HOH 103 3 HOH HOH 103 B HOH 104 3 HOH HOH 104 B HOH 105 3 HOH HOH 105 B HOH 106 3 HOH HOH 106 B HOH 108 3 HOH HOH 108 B HOH 111 3 HOH HOH 111 B HOH 112 3 HOH HOH 112 B HOH 118 3 HOH HOH 118 B HOH 119 3 HOH HOH 119 B HOH 121 3 HOH HOH 121 B HOH 124 3 HOH HOH 124 B HOH 125 3 HOH HOH 125 B HOH 126 3 HOH HOH 126 B HOH 128 3 HOH HOH 128 B HOH 129 3 HOH HOH 129 B T 1 n 1 DT 1 A G 2 n 2 DG 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A C 5 n 5 DC 5 A A 6 n 6 DA 6 A T 7 n 1 DT 7 B G 8 n 2 DG 8 B A 9 n 3 DA 9 B T 10 n 4 DT 10 B C 11 n 5 DC 11 B A 12 n 6 DA 12 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A O3' DA 6 A O3' DA 6 1 Y 1 B O5' DA 12 B O5' DA 6 1 Y 1 A C32 NGM 14 PLANAR 1 B B OP1 O DT HOH 10 105 2.04 1 3.81 0.50 121.30 125.11 A A A C6 N1 C2 DT DT DT 1 1 1 N 1 -7.36 0.60 127.20 119.84 A A A C2 N3 C4 DT DT DT 1 1 1 N 1 8.23 0.60 115.20 123.43 A A A N3 C4 C5 DT DT DT 1 1 1 N 1 -5.92 0.60 123.70 117.78 A A A C5 C6 N1 DT DT DT 1 1 1 N 1 -7.05 0.70 124.90 117.85 A A A C5 C4 O4 DT DT DT 1 1 1 N 1 -4.52 0.60 119.00 114.48 A A A C4 C5 C7 DT DT DT 1 1 1 N 1 5.13 0.60 122.90 128.03 A A A C6 C5 C7 DT DT DT 1 1 1 N 1 10.63 1.50 119.60 130.23 A A A OP1 P OP2 DG DG DG 2 2 2 N 1 -5.82 0.90 105.70 99.88 A A A O5' P OP1 DG DG DG 2 2 2 N 1 -5.19 0.80 105.90 100.71 A A A O4' C1' C2' DG DG DG 2 2 2 N 1 9.78 0.30 108.30 118.08 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -5.95 0.50 111.90 105.95 A A A C2 N3 C4 DG DG DG 2 2 2 N 1 3.59 0.50 128.60 132.19 A A A N3 C4 C5 DG DG DG 2 2 2 N 1 2.52 0.40 106.40 108.92 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 10.41 1.20 119.70 130.11 A A A C3' O3' P DG DG DA 2 2 3 Y 1 9.50 1.20 110.70 120.20 A A A O5' P OP2 DA DA DA 3 3 3 N 1 7.02 1.10 109.80 116.82 A A A C5' C4' O4' DA DA DA 3 3 3 N 1 11.38 0.60 118.60 129.98 A A A C6 N1 C2 DA DA DA 3 3 3 N 1 -3.94 0.50 129.30 125.36 A A A N1 C2 N3 DA DA DA 3 3 3 N 1 -7.21 0.50 110.60 103.39 A A A C2 N3 C4 DA DA DA 3 3 3 N 1 8.85 0.70 126.80 135.65 A A A N3 C4 C5 DA DA DA 3 3 3 N 1 -9.72 0.50 117.70 107.98 A A A C5 C6 N1 DA DA DA 3 3 3 N 1 3.51 0.50 110.70 114.21 A A A C4 C5 N7 DA DA DA 3 3 3 N 1 -4.92 0.50 103.90 98.98 A A A C5 N7 C8 DA DA DA 3 3 3 N 1 -2.46 0.40 105.80 103.34 A A A N9 C4 C5 DA DA DA 3 3 3 N 1 -6.38 0.80 127.40 121.02 A A A N3 C4 N9 DA DA DA 3 3 3 N 1 7.66 0.60 118.60 126.26 A A A N1 C6 N6 DA DA DA 3 3 3 N 1 -7.10 0.80 109.40 102.30 A A A O5' C5' C4' DT DT DT 4 4 4 N 1 5.84 0.50 121.30 127.14 A A A C6 N1 C2 DT DT DT 4 4 4 N 1 -7.72 0.60 127.20 119.48 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 9.58 0.60 115.20 124.78 A A A N3 C4 C5 DT DT DT 4 4 4 N 1 -6.40 0.60 123.70 117.30 A A A C5 C6 N1 DT DT DT 4 4 4 N 1 -6.03 0.60 119.90 113.87 A A A N3 C4 O4 DT DT DT 4 4 4 N 1 13.04 0.60 119.00 132.04 A A A C4 C5 C7 DT DT DT 4 4 4 N 1 -11.72 0.60 122.90 111.18 A A A C6 C5 C7 DT DT DT 4 4 4 N 1 11.75 1.50 119.60 131.35 A A A OP1 P OP2 DC DC DC 5 5 5 N 1 -5.05 0.80 102.40 97.35 A A A C3' C2' C1' DC DC DC 5 5 5 N 1 8.89 0.30 108.30 117.19 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 3.12 0.40 120.30 123.42 A A A C6 N1 C2 DC DC DC 5 5 5 N 1 4.16 0.60 118.60 122.76 A A A C6 N1 C2 DA DA DA 6 6 6 N 1 -3.80 0.50 117.70 113.90 A A A C5 C6 N1 DA DA DA 6 6 6 N 1 6.67 0.60 118.60 125.27 A A A N1 C6 N6 DA DA DA 6 6 6 N 1 3.19 0.30 108.30 111.49 B B B O4' C1' N1 DT DT DT 7 7 7 N 1 3.60 0.60 114.60 118.20 B B B N1 C2 N3 DT DT DT 7 7 7 N 1 -5.64 0.60 127.20 121.56 B B B C2 N3 C4 DT DT DT 7 7 7 N 1 5.00 0.60 115.20 120.20 B B B N3 C4 C5 DT DT DT 7 7 7 N 1 -3.87 0.60 123.70 119.83 B B B C5 C6 N1 DT DT DT 7 7 7 N 1 -6.15 0.80 123.10 116.95 B B B N1 C2 O2 DT DT DT 7 7 7 N 1 -4.50 0.70 124.90 120.40 B B B C5 C4 O4 DT DT DT 7 7 7 N 1 6.66 0.60 119.00 125.66 B B B C4 C5 C7 DT DT DT 7 7 7 N 1 -7.55 0.60 122.90 115.35 B B B C6 C5 C7 DT DT DT 7 7 7 N 1 -12.13 0.80 109.40 97.27 B B B O5' C5' C4' DG DG DG 8 8 8 N 1 -9.44 1.00 110.10 100.66 B B B C1' O4' C4' DG DG DG 8 8 8 N 1 -17.00 2.50 109.70 92.70 B B B C4' C3' O3' DG DG DG 8 8 8 N 1 -7.65 0.80 102.40 94.75 B B B C3' C2' C1' DG DG DG 8 8 8 N 1 3.15 0.50 106.80 109.95 B B B O4' C1' C2' DG DG DG 8 8 8 N 1 5.05 0.50 104.30 109.35 B B B C5 N7 C8 DG DG DG 8 8 8 N 1 -6.97 0.50 113.10 106.13 B B B N7 C8 N9 DG DG DG 8 8 8 N 1 5.00 0.40 106.40 111.40 B B B C8 N9 C4 DG DG DG 8 8 8 N 1 5.36 0.60 119.90 125.26 B B B N1 C6 O6 DG DG DG 8 8 8 N 1 8.65 1.20 119.70 128.35 B B B C3' O3' P DG DG DA 8 8 9 Y 1 -5.29 0.80 109.40 104.11 B B B O5' C5' C4' DA DA DA 9 9 9 N 1 5.09 0.60 118.60 123.69 B B B N1 C6 N6 DA DA DA 9 9 9 N 1 -8.42 1.20 119.70 111.28 B B B C3' O3' P DA DA DT 9 9 10 Y 1 13.33 1.20 110.70 124.03 B B B O5' P OP2 DT DT DT 10 10 10 N 1 -7.22 0.80 109.40 102.18 B B B O5' C5' C4' DT DT DT 10 10 10 N 1 4.05 0.50 121.30 125.35 B B B C6 N1 C2 DT DT DT 10 10 10 N 1 3.62 0.60 115.20 118.82 B B B N3 C4 C5 DT DT DT 10 10 10 N 1 -5.14 0.60 123.70 118.56 B B B C5 C6 N1 DT DT DT 10 10 10 N 1 10.88 0.60 119.00 129.88 B B B C4 C5 C7 DT DT DT 10 10 10 N 1 -11.43 0.60 122.90 111.47 B B B C6 C5 C7 DT DT DT 10 10 10 N 1 -9.41 0.80 109.40 99.99 B B B O5' C5' C4' DC DC DC 11 11 11 N 1 9.24 0.30 108.30 117.54 B B B O4' C1' N1 DC DC DC 11 11 11 N 1 -2.75 0.40 120.30 117.55 B B B C6 N1 C2 DC DC DC 11 11 11 N 1 5.96 0.50 119.90 125.86 B B B C2 N3 C4 DC DC DC 11 11 11 N 1 -2.62 0.40 121.90 119.28 B B B N3 C4 C5 DC DC DC 11 11 11 N 1 -3.22 0.50 117.40 114.18 B B B C4 C5 C6 DC DC DC 11 11 11 N 1 6.51 0.50 121.00 127.51 B B B C5 C6 N1 DC DC DC 11 11 11 N 1 -6.01 0.60 118.90 112.89 B B B N1 C2 O2 DC DC DC 11 11 11 N 1 9.62 0.70 121.90 131.52 B B B N3 C2 O2 DC DC DC 11 11 11 N 1 7.68 0.70 118.00 125.68 B B B N3 C4 N4 DC DC DC 11 11 11 N 1 -5.17 0.70 120.20 115.03 B B B C5 C4 N4 DC DC DC 11 11 11 N 1 7.27 1.20 120.80 128.07 B B B C6 N1 C1' DC DC DC 11 11 11 N 1 -9.13 1.50 119.60 110.47 B B B OP1 P OP2 DA DA DA 12 12 12 N 1 6.91 1.10 109.80 116.71 B B B C5' C4' O4' DA DA DA 12 12 12 N 1 7.74 0.60 118.60 126.34 B B B C6 N1 C2 DA DA DA 12 12 12 N 1 -6.93 0.50 129.30 122.37 B B B N1 C2 N3 DA DA DA 12 12 12 N 1 -4.05 0.50 117.70 113.65 B B B C5 C6 N1 DA DA DA 12 12 12 N 1 -3.90 0.50 103.90 100.00 B B B C5 N7 C8 DA DA DA 12 12 12 N 1 7.84 0.60 118.60 126.44 B B B N1 C6 N6 DA DA DA 12 12 12 N 1 A A C5 C7 DT DT 1 1 -0.189 0.006 1.496 1.307 N 1 A A O3' P DT DG 1 2 0.091 0.012 1.607 1.698 Y 1 A A C2' C1' DG DG 2 2 0.076 0.010 1.519 1.595 N 1 A A N3 C4 DG DG 2 2 0.043 0.007 1.350 1.393 N 1 A A C5 N7 DA DA 3 3 0.039 0.006 1.388 1.427 N 1 A A O3' P DA DT 3 4 0.075 0.012 1.607 1.682 Y 1 A A C5 C7 DT DT 4 4 -0.100 0.006 1.496 1.396 N 1 A A O3' P DT DC 4 5 0.084 0.012 1.607 1.691 Y 1 A A O4' C4' DC DC 5 5 -0.074 0.010 1.446 1.372 N 1 A A O3' P DC DA 5 6 0.102 0.012 1.607 1.709 Y 1 A A O4' C4' DA DA 6 6 -0.062 0.010 1.446 1.384 N 1 B B C5 C7 DT DT 7 7 0.115 0.006 1.496 1.611 N 1 B B O3' P DT DG 7 8 0.102 0.012 1.607 1.709 Y 1 B B C2' C1' DG DG 8 8 0.063 0.010 1.519 1.582 N 1 B B O3' P DA DT 9 10 0.116 0.012 1.607 1.723 Y 1 B B O4' C4' DT DT 10 10 -0.068 0.010 1.446 1.378 N 1 B B C5 C7 DT DT 10 10 0.109 0.006 1.496 1.605 N 1 B B O3' P DT DC 10 11 0.115 0.012 1.607 1.722 Y 1 B B O3' P DC DA 11 12 0.118 0.012 1.607 1.725 Y 1 B B C5 N7 DA DA 12 12 0.038 0.006 1.388 1.426 N 30.00 0.3000000 0.1950000 1.800 10.000 4767 81.000 1 1.000 TR isotropic TR isotropic 1.800 10.000 115 465 112 238 0 0.020 0.020 0.076 0.050 0.025 0.020 0.037 0.060 fix fix 1.800 182D 4953 3.000 1 refinement PROLSQ DNA-NOGALAMYCIN INTERACTIONS: THE CRYSTAL STRUCTURE OF D(TGATCA) COMPLEXED WITH NOGALAMYCIN 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N hydrog WATSON-CRICK A DT 1 A N3 DT 1 1_555 B DA 12 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 1 A O4 DT 1 1_555 B DA 12 B N6 DA 6 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 11 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 11 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 11 B N4 DC 5 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 10 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 10 B O4 DT 4 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 9 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 9 B N6 DA 3 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 8 B N2 DG 2 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 7 B N3 DT 1 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 7 B O4 DT 1 1_555 DNA RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 182D PDB 1 182D 1 6 182D 1 6 182D A 1 1 6 7 12 182D 7 12 182D B 1 1 6 BINDING SITE FOR RESIDUE NGM B 13 B NGM 13 Software 14 BINDING SITE FOR RESIDUE NGM A 14 A NGM 14 Software 10 A DT 1 A DT 1 14 6_555 A DG 2 A DG 2 14 6_555 A DC 5 A DC 5 14 1_555 A DA 6 A DA 6 14 1_555 B DT 7 B DT 1 14 1_555 B DG 8 B DG 2 14 1_555 B DA 9 B DA 3 14 1_555 B DT 10 B DT 4 14 1_555 B HOH 50 F HOH 14 1_555 B HOH 52 F HOH 14 1_555 B HOH 58 F HOH 14 1_555 B HOH 75 F HOH 14 1_555 B HOH 76 F HOH 14 4_554 B HOH 81 F HOH 14 1_555 A DT 1 A DT 1 10 1_555 A DG 2 A DG 2 10 1_555 A DA 3 A DA 3 10 1_555 A DT 4 A DT 4 10 1_555 A HOH 21 E HOH 10 1_555 A HOH 43 E HOH 10 1_555 A HOH 94 E HOH 10 1_555 B DC 11 B DC 5 10 1_555 B DA 12 B DA 6 10 1_555 B HOH 48 F HOH 10 1_555 92 P 41 21 2