32.72 16.813 10.330 8.939 A O5' DG 1 ATOM A O5' DG 1 1 1.00 1 O 16.18 16.575 8.983 8.488 A C5' DG 1 ATOM A C5' DG 1 1 1.00 1 C 16.59 15.066 8.816 8.376 A C4' DG 1 ATOM A C4' DG 1 1 1.00 1 C 14.41 14.647 9.078 7.053 A O4' DG 1 ATOM A O4' DG 1 1 1.00 1 O 14.14 14.647 7.320 8.603 A C3' DG 1 ATOM A C3' DG 1 1 1.00 1 C 15.64 13.224 7.267 8.780 A O3' DG 1 ATOM A O3' DG 1 1 1.00 1 O 11.24 15.075 6.774 7.222 A C2' DG 1 ATOM A C2' DG 1 1 1.00 1 C 12.39 14.597 7.849 6.284 A C1' DG 1 ATOM A C1' DG 1 1 1.00 1 C 14.86 15.530 7.973 5.151 A N9 DG 1 ATOM A N9 DG 1 1 1.00 1 N 13.49 16.908 7.831 5.188 A C8 DG 1 ATOM A C8 DG 1 1 1.00 1 C 8.05 17.469 7.997 4.038 A N7 DG 1 ATOM A N7 DG 1 1 1.00 1 N 11.70 16.431 8.324 3.176 A C5 DG 1 ATOM A C5 DG 1 1 1.00 1 C 10.75 16.415 8.674 1.802 A C6 DG 1 ATOM A C6 DG 1 1 1.00 1 C 14.89 17.356 8.733 1.016 A O6 DG 1 ATOM A O6 DG 1 1 1.00 1 O 6.51 15.156 8.906 1.281 A N1 DG 1 ATOM A N1 DG 1 1 1.00 1 N 2.33 14.048 8.840 2.048 A C2 DG 1 ATOM A C2 DG 1 1 1.00 1 C 9.98 12.908 9.107 1.398 A N2 DG 1 ATOM A N2 DG 1 1 1.00 1 N 9.55 14.021 8.561 3.351 A N3 DG 1 ATOM A N3 DG 1 1 1.00 1 N 11.21 15.228 8.312 3.851 A C4 DG 1 ATOM A C4 DG 1 1 1.00 1 C 16.91 12.424 5.937 9.143 A P DC 2 ATOM A P DC 1 2 1.00 1 P 19.72 11.224 6.329 9.964 A OP1 DC 2 ATOM A OP1 DC 1 2 1.00 1 O 17.07 13.435 5.136 9.854 A OP2 DC 2 ATOM A OP2 DC 1 2 1.00 1 O 15.08 11.951 5.355 7.753 A O5' DC 2 ATOM A O5' DC 1 2 1.00 1 O 11.74 10.913 6.079 7.007 A C5' DC 2 ATOM A C5' DC 1 2 1.00 1 C 16.46 10.805 5.349 5.694 A C4' DC 2 ATOM A C4' DC 1 2 1.00 1 C 20.30 11.875 5.711 4.842 A O4' DC 2 ATOM A O4' DC 1 2 1.00 1 O 11.80 10.794 3.829 5.782 A C3' DC 2 ATOM A C3' DC 1 2 1.00 1 C 15.82 9.569 3.253 5.300 A O3' DC 2 ATOM A O3' DC 1 2 1.00 1 O 12.26 12.005 3.414 4.942 A C2' DC 2 ATOM A C2' DC 1 2 1.00 1 C 12.84 12.141 4.560 3.970 A C1' DC 2 ATOM A C1' DC 1 2 1.00 1 C 11.15 13.546 4.696 3.510 A N1 DC 2 ATOM A N1 DC 1 2 1.00 1 N 2.14 13.717 5.112 2.192 A C2 DC 2 ATOM A C2 DC 1 2 1.00 1 C 12.30 12.787 5.320 1.449 A O2 DC 2 ATOM A O2 DC 1 2 1.00 1 O 13.46 15.007 5.260 1.763 A N3 DC 2 ATOM A N3 DC 1 2 1.00 1 N 6.62 16.077 5.029 2.560 A C4 DC 2 ATOM A C4 DC 1 2 1.00 1 C 10.76 17.309 5.213 2.048 A N4 DC 2 ATOM A N4 DC 1 2 1.00 1 N 4.95 15.881 4.595 3.897 A C5 DC 2 ATOM A C5 DC 1 2 1.00 1 C 6.27 14.604 4.465 4.323 A C6 DC 2 ATOM A C6 DC 1 2 1.00 1 C 12.01 8.677 2.304 6.289 A P DA 3 ATOM A P DA 1 3 1.00 1 P 14.40 8.796 2.761 7.709 A OP1 DA 3 ATOM A OP1 DA 1 3 1.00 1 O 7.59 9.328 0.997 6.070 A OP2 DA 3 ATOM A OP2 DA 1 3 1.00 1 O 16.58 7.215 2.476 5.750 A O5' DA 3 ATOM A O5' DA 1 3 1.00 1 O 12.47 6.677 3.794 5.490 A C5' DA 3 ATOM A C5' DA 1 3 1.00 1 C 3.49 5.819 3.687 4.274 A C4' DA 3 ATOM A C4' DA 1 3 1.00 1 C 9.42 6.456 3.847 3.052 A O4' DA 3 ATOM A O4' DA 1 3 1.00 1 O 7.59 4.878 2.499 4.141 A C3' DA 3 ATOM A C3' DA 1 3 1.00 1 C 13.09 3.621 2.998 3.624 A O3' DA 3 ATOM A O3' DA 1 3 1.00 1 O 2.00 5.560 1.698 3.015 A C2' DA 3 ATOM A C2' DA 1 3 1.00 1 C 7.49 6.083 2.779 2.146 A C1' DA 3 ATOM A C1' DA 1 3 1.00 1 C 2.98 7.321 2.381 1.427 A N9 DA 3 ATOM A N9 DA 1 3 1.00 1 N 8.98 8.612 2.422 1.888 A C8 DA 3 ATOM A C8 DA 1 3 1.00 1 C 10.41 9.488 2.108 0.962 A N7 DA 3 ATOM A N7 DA 1 3 1.00 1 N 6.55 8.729 1.858 -0.173 A C5 DA 3 ATOM A C5 DA 1 3 1.00 1 C 3.85 9.076 1.466 -1.481 A C6 DA 3 ATOM A C6 DA 1 3 1.00 1 C 8.67 10.305 1.259 -1.885 A N6 DA 3 ATOM A N6 DA 1 3 1.00 1 N 7.68 8.024 1.336 -2.367 A N1 DA 3 ATOM A N1 DA 1 3 1.00 1 N 8.77 6.749 1.573 -1.963 A C2 DA 3 ATOM A C2 DA 1 3 1.00 1 C 3.15 6.357 1.965 -0.748 A N3 DA 3 ATOM A N3 DA 1 3 1.00 1 N 7.29 7.378 2.060 0.102 A C4 DA 3 ATOM A C4 DA 1 3 1.00 1 C 14.48 2.184 2.428 4.085 A P DT 4 ATOM A P DT 1 4 1.00 1 P 18.06 2.119 0.944 3.890 A OP1 DT 4 ATOM A OP1 DT 1 4 1.00 1 O 18.59 1.320 3.176 3.103 A OP2 DT 4 ATOM A OP2 DT 1 4 1.00 1 O 11.83 1.989 2.891 5.573 A O5' DT 4 ATOM A O5' DT 1 4 1.00 1 O 13.60 1.576 4.269 5.811 A C5' DT 4 ATOM A C5' DT 1 4 1.00 1 C 14.27 1.802 4.542 7.263 A C4' DT 4 ATOM A C4' DT 1 4 1.00 1 C 11.59 1.103 3.598 8.042 A O4' DT 4 ATOM A O4' DT 1 4 1.00 1 O 20.07 3.236 4.566 7.745 A C3' DT 4 ATOM A C3' DT 1 4 1.00 1 C 15.57 3.511 5.492 8.802 A O3' DT 4 ATOM A O3' DT 1 4 1.00 1 O 13.37 3.398 3.123 8.269 A C2' DT 4 ATOM A C2' DT 1 4 1.00 1 C 10.60 2.013 2.963 8.941 A C1' DT 4 ATOM A C1' DT 1 4 1.00 1 C 12.23 1.829 1.496 9.041 A N1 DT 4 ATOM A N1 DT 1 4 1.00 1 N 12.70 1.725 0.974 10.305 A C2 DT 4 ATOM A C2 DT 1 4 1.00 1 C 8.80 1.775 1.692 11.308 A O2 DT 4 ATOM A O2 DT 1 4 1.00 1 O 10.51 1.603 -0.380 10.412 A N3 DT 4 ATOM A N3 DT 1 4 1.00 1 N 10.02 1.619 -1.199 9.338 A C4 DT 4 ATOM A C4 DT 1 4 1.00 1 C 18.52 1.516 -2.446 9.550 A O4 DT 4 ATOM A O4 DT 1 4 1.00 1 O 9.26 1.734 -0.647 8.037 A C5 DT 4 ATOM A C5 DT 1 4 1.00 1 C 10.82 1.750 -1.532 6.837 A C7 DT 4 ATOM A C7 DT 1 4 1.00 1 C 7.29 1.844 0.689 7.933 A C6 DT 4 ATOM A C6 DT 1 4 1.00 1 C 17.29 3.761 7.053 8.551 A P DG 5 ATOM A P DG 1 5 1.00 1 P 17.12 3.558 7.671 9.852 A OP1 DG 5 ATOM A OP1 DG 1 5 1.00 1 O 13.05 2.826 7.570 7.458 A OP2 DG 5 ATOM A OP2 DG 1 5 1.00 1 O 14.21 5.238 7.113 7.994 A O5' DG 5 ATOM A O5' DG 1 5 1.00 1 O 10.54 6.315 6.578 8.812 A C5' DG 5 ATOM A C5' DG 1 5 1.00 1 C 11.09 7.571 7.053 8.150 A C4' DG 5 ATOM A C4' DG 1 5 1.00 1 C 7.21 7.700 6.596 6.825 A O4' DG 5 ATOM A O4' DG 1 5 1.00 1 O 10.73 7.695 8.603 8.074 A C3' DG 5 ATOM A C3' DG 1 5 1.00 1 C 19.14 9.071 8.929 8.174 A O3' DG 5 ATOM A O3' DG 1 5 1.00 1 O 6.50 7.179 8.906 6.664 A C2' DG 5 ATOM A C2' DG 1 5 1.00 1 C 11.00 7.666 7.682 5.909 A C1' DG 5 ATOM A C1' DG 1 5 1.00 1 C 8.02 6.803 7.374 4.764 A N9 DG 5 ATOM A N9 DG 1 5 1.00 1 N 3.41 5.423 7.392 4.703 A C8 DG 5 ATOM A C8 DG 1 5 1.00 1 C 8.88 4.950 7.077 3.549 A N7 DG 5 ATOM A N7 DG 1 5 1.00 1 N 9.70 6.076 6.869 2.760 A C5 DG 5 ATOM A C5 DG 1 5 1.00 1 C 5.19 6.216 6.477 1.396 A C6 DG 5 ATOM A C6 DG 1 5 1.00 1 C 11.30 5.353 6.240 0.567 A O6 DG 5 ATOM A O6 DG 1 5 1.00 1 O 8.37 7.515 6.388 0.991 A N1 DG 5 ATOM A N1 DG 1 5 1.00 1 N 3.02 8.571 6.554 1.832 A C2 DG 5 ATOM A C2 DG 1 5 1.00 1 C 12.04 9.771 6.394 1.247 A N2 DG 5 ATOM A N2 DG 1 5 1.00 1 N 3.44 8.497 6.887 3.101 A N3 DG 5 ATOM A N3 DG 1 5 1.00 1 N 6.19 7.209 7.023 3.510 A C4 DG 5 ATOM A C4 DG 1 5 1.00 1 C 18.75 9.614 10.247 8.873 A P DC 6 ATOM A P DC 1 6 1.00 1 P 13.66 10.294 9.927 10.154 A OP1 DC 6 ATOM A OP1 DC 1 6 1.00 1 O 17.74 8.371 11.067 9.060 A OP2 DC 6 ATOM A OP2 DC 1 6 1.00 1 O 19.73 10.618 10.817 7.779 A O5' DC 6 ATOM A O5' DC 1 6 1.00 1 O 17.52 11.418 9.903 7.002 A C5' DC 6 ATOM A C5' DC 1 6 1.00 1 C 9.85 11.424 10.419 5.607 A C4' DC 6 ATOM A C4' DC 1 6 1.00 1 C 13.31 10.375 9.897 4.844 A O4' DC 6 ATOM A O4' DC 1 6 1.00 1 O 21.09 11.505 11.898 5.336 A C3' DC 6 ATOM A C3' DC 1 6 1.00 1 C 18.08 12.728 12.296 4.701 A O3' DC 6 ATOM A O3' DC 1 6 1.00 1 O 17.67 10.301 12.165 4.389 A C2' DC 6 ATOM A C2' DC 1 6 1.00 1 C 19.77 10.195 10.805 3.717 A C1' DC 6 ATOM A C1' DC 1 6 1.00 1 C 17.95 8.864 10.568 3.132 A N1 DC 6 ATOM A N1 DC 1 6 1.00 1 N 4.13 8.832 9.980 1.880 A C2 DC 6 ATOM A C2 DC 1 6 1.00 1 C 12.85 9.884 9.731 1.271 A O2 DC 6 ATOM A O2 DC 1 6 1.00 1 O 11.52 7.616 9.713 1.323 A N3 DC 6 ATOM A N3 DC 1 6 1.00 1 N 5.34 6.459 10.022 1.973 A C4 DC 6 ATOM A C4 DC 1 6 1.00 1 C 10.23 5.288 9.760 1.359 A N4 DC 6 ATOM A N4 DC 1 6 1.00 1 N 8.17 6.495 10.592 3.266 A C5 DC 6 ATOM A C5 DC 1 6 1.00 1 C 12.80 7.702 10.865 3.797 A C6 DC 6 ATOM A C6 DC 1 6 1.00 1 C 24.85 13.618 13.554 5.256 A P DT 7 ATOM A P DT 1 7 1.00 1 P 16.00 13.483 13.869 6.681 A OP1 DT 7 ATOM A OP1 DT 1 7 1.00 1 O 17.41 13.167 14.635 4.328 A OP2 DT 7 ATOM A OP2 DT 1 7 1.00 1 O 16.87 15.091 13.026 4.937 A O5' DT 7 ATOM A O5' DT 1 7 1.00 1 O 13.37 15.647 11.969 5.794 A C5' DT 7 ATOM A C5' DT 1 7 1.00 1 C 16.72 16.892 11.577 4.976 A C4' DT 7 ATOM A C4' DT 1 7 1.00 1 C 12.25 16.462 11.334 3.670 A O4' DT 7 ATOM A O4' DT 1 7 1.00 1 O 21.47 17.944 12.670 4.898 A C3' DT 7 ATOM A C3' DT 1 7 1.00 1 C 23.32 19.147 12.361 5.573 A O3' DT 7 ATOM A O3' DT 1 7 1.00 1 O 16.71 18.059 13.032 3.444 A C2' DT 7 ATOM A C2' DT 1 7 1.00 1 C 16.07 17.410 11.886 2.723 A C1' DT 7 ATOM A C1' DT 1 7 1.00 1 C 16.36 16.590 12.343 1.586 A N1 DT 7 ATOM A N1 DT 1 7 1.00 1 N 21.91 17.253 12.634 0.404 A C2 DT 7 ATOM A C2 DT 1 7 1.00 1 C 27.22 18.473 12.557 0.336 A O2 DT 7 ATOM A O2 DT 1 7 1.00 1 O 20.90 16.491 13.038 -0.660 A N3 DT 7 ATOM A N3 DT 1 7 1.00 1 N 14.21 15.133 13.121 -0.587 A C4 DT 7 ATOM A C4 DT 1 7 1.00 1 C 19.87 14.537 13.495 -1.625 A O4 DT 7 ATOM A O4 DT 1 7 1.00 1 O 16.22 14.478 12.782 0.631 A C5 DT 7 ATOM A C5 DT 1 7 1.00 1 C 16.93 12.987 12.871 0.765 A C7 DT 7 ATOM A C7 DT 1 7 1.00 1 C 14.18 15.237 12.402 1.666 A C6 DT 7 ATOM A C6 DT 1 7 1.00 1 C 47.87 0.000 0.000 0.000 A MG MG 8 HETATM B MG MG 2 0.25 1 MG 17.80 11.260 7.956 12.178 A MG MG 9 HETATM C MG MG 2 0.50 1 MG 29.16 0.000 2.030 0.000 A O HOH 10 HETATM D O HOH 3 0.50 1 O 32.89 0.000 0.000 1.863 A O HOH 11 HETATM D O HOH 3 0.50 1 O 14.39 2.446 0.000 0.000 A O HOH 12 HETATM D O HOH 3 0.50 1 O 10.56 11.260 0.000 4.584 A O HOH 13 HETATM D O HOH 3 0.50 1 O 35.90 16.890 14.843 9.720 A O HOH 14 HETATM D O HOH 3 0.50 1 O 5.75 7.756 1.140 -4.910 A O HOH 15 HETATM D O HOH 3 1.00 1 O 21.93 3.750 2.066 -0.487 A O HOH 16 HETATM D O HOH 3 1.00 1 O 22.28 5.279 1.330 -5.758 A O HOH 17 HETATM D O HOH 3 1.00 1 O 23.10 2.831 4.387 1.011 A O HOH 18 HETATM D O HOH 3 1.00 1 O 18.63 2.356 7.374 3.695 A O HOH 19 HETATM D O HOH 3 1.00 1 O 23.72 8.182 7.724 11.947 A O HOH 20 HETATM D O HOH 3 1.00 1 O 35.64 15.451 13.388 10.583 A O HOH 21 HETATM D O HOH 3 1.00 1 O 35.87 6.292 9.511 12.173 A O HOH 22 HETATM D O HOH 3 1.00 1 O 37.01 1.919 8.710 5.982 A O HOH 23 HETATM D O HOH 3 1.00 1 O 28.83 10.647 1.852 9.903 A O HOH 24 HETATM D O HOH 3 1.00 1 O 21.09 3.529 -1.069 3.310 A O HOH 25 HETATM D O HOH 3 1.00 1 O 29.40 5.454 -0.386 8.593 A O HOH 26 HETATM D O HOH 3 1.00 1 O 25.82 3.655 11.191 6.182 A O HOH 27 HETATM D O HOH 3 1.00 1 O 44.22 1.667 10.176 12.324 A O HOH 28 HETATM D O HOH 3 1.00 1 O 46.28 6.977 4.281 11.357 A O HOH 29 HETATM D O HOH 3 1.00 1 O 20.54 13.575 12.123 9.345 A O HOH 30 HETATM D O HOH 3 1.00 1 O 42.36 2.842 8.727 17.348 A O HOH 31 HETATM D O HOH 3 1.00 1 O 44.37 1.417 4.316 12.200 A O HOH 32 HETATM D O HOH 3 1.00 1 O 40.32 4.968 1.377 11.645 A O HOH 33 HETATM D O HOH 3 1.00 1 O 27.58 20.541 13.340 -0.197 A O HOH 34 HETATM D O HOH 3 1.00 1 O 59.98 -0.597 9.778 2.399 A O HOH 35 HETATM D O HOH 3 1.00 1 O 47.14 11.168 16.404 3.588 A O HOH 36 HETATM D O HOH 3 1.00 1 O 45.36 1.441 11.429 8.352 A O HOH 37 HETATM D O HOH 3 1.00 1 O 56.84 1.142 14.540 7.329 A O HOH 38 HETATM D O HOH 3 1.00 1 O 45.87 -0.092 6.157 2.423 A O HOH 39 HETATM D O HOH 3 1.00 1 O 48.09 14.726 3.206 7.823 A O HOH 40 HETATM D O HOH 3 1.00 1 O 39.59 1.383 4.803 -0.356 A O HOH 41 HETATM D O HOH 3 1.00 1 O 43.93 7.166 1.532 9.613 A O HOH 42 HETATM D O HOH 3 1.00 1 O 35.35 18.277 12.296 7.577 A O HOH 43 HETATM D O HOH 3 1.00 1 O 35.14 3.799 9.873 10.264 A O HOH 44 HETATM D O HOH 3 1.00 1 O 60.99 4.921 3.105 13.978 A O HOH 45 HETATM D O HOH 3 1.00 1 O 37.40 -0.770 6.341 12.715 A O HOH 46 HETATM D O HOH 3 1.00 1 O 40.54 2.597 10.437 2.818 A O HOH 47 HETATM D O HOH 3 1.00 1 O 61.47 -1.414 7.730 3.729 A O HOH 48 HETATM D O HOH 3 1.00 1 O 35.31 19.811 3.901 4.007 A O HOH 49 HETATM D O HOH 3 1.00 1 O 61.06 2.160 -4.845 8.076 A O HOH 50 HETATM D O HOH 3 1.00 1 O 56.42 2.394 -5.248 5.843 A O HOH 51 HETATM D O HOH 3 1.00 1 O 47.44 11.260 1.235 12.178 A O HOH 52 HETATM D O HOH 3 0.50 1 O 63.19 8.330 16.974 3.461 A O HOH 53 HETATM D O HOH 3 1.00 1 O 42.07 11.260 11.637 12.178 A O HOH 54 HETATM D O HOH 3 0.50 1 O 53.54 2.885 7.985 14.703 A O HOH 55 HETATM D O HOH 3 1.00 1 O 62.43 5.668 12.236 8.897 A O HOH 56 HETATM D O HOH 3 1.00 1 O 46.85 15.660 4.186 10.887 A O HOH 57 HETATM D O HOH 3 1.00 1 O 0.044405 0.000000 0.000000 0.000000 0.016844 0.000000 0.000000 0.000000 0.041068 0.00000 0.00000 0.00000 Leonard, G.A. Zhang, S. Peterson, M.R. Harrop, S.J. Helliwell, J.R. Cruse, W.B.T. Langlois D'Estaintot, B. Kennard, O. Brown, T. Hunter, W.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 22.520 59.370 24.350 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N MG N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing UK Structure STRUE6 2005 0969-2126 3 335 340 10.1016/S0969-2126(01)00165-4 7613864 Self-association of a DNA loop creates a quadruplex: crystal structure of d(GCATGCT) at 1.8 A resolution. 1995 10.2210/pdb184d/pdb pdb_0000184d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 279.00 1 DIFFRACTOMETER SYNTEX P21 x-ray 1 1.0 2113.410 DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3') 1 syn polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 48 nat water no no (DG)(DC)(DA)(DT)(DG)(DC)(DT) GCATGCT A polydeoxyribonucleotide n n n n n n n 1.93 36.12 VAPOR DIFFUSION, SITTING DROP 6.80 pH 6.80, VAPOR DIFFUSION, SITTING DROP ROOM TEMPERATURE WATER 1 HEXANE-1,6-DIOL 1 LI CACODYLATE 1 MGCL2 1 SPERMINE_HCL 1 WATER 2 HEXANE-1,6-DIOL 2 -1.542 A 1 A 6 173.781 A_DG1:DC6_A 1 38.236 -3.124 -0.589 8.367 8.032 A 2 A 5 176.930 A_DC2:DG5_A 2 31.085 3.200 0.210 8.404 2.839 30.771 A A 1 2 14.045 A A 6 5 2.846 7.377 0.087 0.369 AA_DG1DC2:DG5DC6_AA 1 -2.332 4.441 29.806 -0.580 -0.567 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1995-07-10 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1994-08-10 REL REL MG MAGNESIUM ION HOH water MG 8 2 MG MG 8 A MG 9 2 MG MG 9 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 43 3 HOH HOH 43 A HOH 44 3 HOH HOH 44 A HOH 45 3 HOH HOH 45 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 50 3 HOH HOH 50 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 56 3 HOH HOH 56 A HOH 57 3 HOH HOH 57 A G 1 n 1 DG 1 A C 2 n 2 DC 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A G 5 n 5 DG 5 A C 6 n 6 DC 6 A T 7 n 7 DT 7 A author_defined_assembly 2 dimeric A HOH 10 D O HOH 1_555 A MG 8 B MG MG 1_555 A HOH 11 D O HOH 1_555 90.0 A HOH 10 D O HOH 1_555 A MG 8 B MG MG 1_555 A HOH 12 D O HOH 1_555 90.0 A HOH 11 D O HOH 1_555 A MG 8 B MG MG 1_555 A HOH 12 D O HOH 1_555 90.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_655 -x+1,y,-z crystal symmetry operation 22.5200000000 0.0000000000 0.0000000000 1 A MG 8 B MG 1 A MG 9 C MG 1 A HOH 10 D HOH 1 A HOH 11 D HOH 1 A HOH 12 D HOH 1 A HOH 13 D HOH 1 A HOH 14 D HOH 1 A HOH 52 D HOH 1 A HOH 54 D HOH 1 A A O O HOH HOH 18 41 2.03 1 A A OP2 O DG HOH 5 23 2.07 1 A A O3' O DT HOH 7 43 2.19 1 -4.53 0.70 102.20 97.67 A A A C4' C3' C2' DG DG DG 1 1 1 N 1 3.14 0.50 111.50 114.64 A A A C5 C6 N1 DG DG DG 1 1 1 N 1 3.70 0.60 118.90 122.60 A A A N1 C2 O2 DC DC DC 2 2 2 N 1 6.66 1.10 109.80 116.46 A A A C5' C4' O4' DA DA DA 3 3 3 N 1 5.50 0.30 108.30 113.80 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 -4.61 0.60 127.20 122.59 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 4.43 0.60 115.20 119.63 A A A N3 C4 C5 DT DT DT 4 4 4 N 1 2.61 0.30 108.30 110.91 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 -9.08 0.80 109.40 100.32 A A A O5' C5' C4' DT DT DT 7 7 7 N 1 -5.14 0.60 127.20 122.06 A A A C2 N3 C4 DT DT DT 7 7 7 N 1 4.13 0.60 115.20 119.33 A A A N3 C4 C5 DT DT DT 7 7 7 N 1 A A O O HOH HOH 46 46 1.88 1_555 3_556 1 A A O O HOH HOH 29 57 2.11 1_555 3_656 0.2140000 0.2140000 1.800 7.000 1579 96.000 1 0.000 1.800 7.000 48 190 2 140 0 refinement X-PLOR refinement NUCLSQ SELF-ASSOCIATION OF A DNA LOOP CREATES A QUADRUPLEX: CRYSTAL STRUCTURE OF D(GCATGCT) AT 1.8 ANGSTROMS RESOLUTION 1 N N 2 N N 2 N N 3 N N metalc 2.030 A MG 8 B MG MG 1_555 A HOH 10 D O HOH 1_555 metalc 1.863 A MG 8 B MG MG 1_555 A HOH 11 D O HOH 1_555 metalc 2.446 A MG 8 B MG MG 1_555 A HOH 12 D O HOH 1_555 hydrog DG-DC PAIR A DG 1 A N2 DG 1 1_555 A DC 6 A O2 DC 6 1_555 hydrog DC-DG PAIR A DC 2 A O2 DC 2 1_555 A DG 5 A N2 DG 5 1_555 DNA U-DNA, QUADRUPLE HELIX, TETRAPLEX, LOOP, DNA 184D PDB 1 184D 1 7 184D 1 7 184D A 1 1 7 BINDING SITE FOR RESIDUE MG A 8 A MG 8 Software 12 BINDING SITE FOR RESIDUE MG A 9 A MG 9 Software 6 A HOH 10 D HOH 12 1_555 A HOH 10 D HOH 12 2_555 A HOH 10 D HOH 12 3_555 A HOH 10 D HOH 12 4_555 A HOH 11 D HOH 12 1_555 A HOH 11 D HOH 12 2_555 A HOH 11 D HOH 12 3_555 A HOH 11 D HOH 12 4_555 A HOH 12 D HOH 12 3_555 A HOH 12 D HOH 12 1_555 A HOH 12 D HOH 12 4_555 A HOH 12 D HOH 12 2_555 A DC 2 A DC 2 6 1_555 A DC 2 A DC 2 6 3_656 A DC 6 A DC 6 6 3_656 A DC 6 A DC 6 6 1_555 A HOH 20 D HOH 6 3_656 A HOH 20 D HOH 6 1_555 21 C 2 2 2