23.63
7.172
-1.925
-5.659
A
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1
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1
1
1.00
1
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23.25
6.881
-3.122
-4.894
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1
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A
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1
1
1.00
1
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23.52
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-3.647
-4.278
A
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1
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A
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1
1
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1
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22.79
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-3.551
-5.279
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1
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1
1
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24.40
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-2.901
-3.074
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1
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1
1
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1
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24.84
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-3.291
-1.810
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1
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1
1
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24.28
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-3.230
-3.153
A
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1
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A
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1
1
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1
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23.26
10.450
-3.295
-4.638
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1
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A
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1
1
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1
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23.95
11.018
-2.047
-5.199
A
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1
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A
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1
1
1.00
1
N
22.87
12.371
-1.773
-4.961
A
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1
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A
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1
1
1.00
1
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23.22
13.025
-2.571
-4.288
A
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1
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A
O2
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1
1
1.00
1
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22.88
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-0.646
-5.463
A
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1
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A
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1
1
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1
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23.39
12.167
0.182
-6.185
A
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1
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A
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1
1
1.00
1
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24.25
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1.270
-6.669
A
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1
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A
N4
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1
1
1.00
1
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22.99
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-0.078
-6.441
A
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1
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A
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1
1
1.00
1
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23.04
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-1.192
-5.939
A
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1
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A
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1
1
1.00
1
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25.44
7.657
-2.142
-0.775
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2
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A
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1
2
1.00
1
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27.47
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-2.710
0.032
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2
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1
2
1.00
1
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24.93
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-0.945
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2
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1
2
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23.38
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-1.890
0.134
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2
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1
2
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23.47
9.578
-3.022
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2
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1
2
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1
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25.10
11.009
-2.615
1.016
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2
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1
2
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25.38
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-2.476
-0.266
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2
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1
2
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25.27
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-1.275
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2
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1
2
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26.01
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-1.305
3.124
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2
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1
2
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24.15
12.674
-0.958
1.279
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2
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1
2
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24.53
12.696
-1.483
-0.139
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2
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A
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1
2
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23.98
12.501
-0.408
-1.140
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2
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A
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1
2
1.00
1
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22.27
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0.473
-1.341
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2
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A
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1
2
1.00
1
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21.84
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0.308
-0.651
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2
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1
2
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22.87
13.459
1.444
-2.264
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2
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1
2
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24.49
12.327
1.557
-2.967
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2
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1
2
1.00
1
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24.94
12.254
2.541
-3.869
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2
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1
2
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23.63
11.226
0.668
-2.781
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2
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1
2
1.00
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24.09
11.356
-0.295
-1.870
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2
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1
2
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26.09
10.896
0.013
3.973
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3
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1
3
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26.76
10.875
-0.421
5.413
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3
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1
3
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25.75
9.786
0.833
3.434
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3
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1
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25.72
12.271
0.841
3.844
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24.93
13.351
0.286
4.638
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3
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3
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23.41
14.495
1.236
4.407
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3
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1
3
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23.10
14.677
1.344
2.990
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3
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3
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22.23
14.283
2.649
4.904
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3
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23.08
14.617
2.762
6.289
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3
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21.76
15.185
3.451
3.988
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3
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1
3
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20.77
15.189
2.654
2.704
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3
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1
3
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19.56
14.352
3.282
1.666
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3
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1
3
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17.21
14.903
4.349
0.941
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3
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1
3
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17.20
16.052
4.696
1.229
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3
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1
3
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15.74
14.148
4.939
-0.012
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3
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1
3
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15.98
12.908
4.514
-0.246
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3
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1
3
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15.26
12.197
5.129
-1.192
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3
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1
3
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17.60
12.340
3.425
0.477
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3
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1
3
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17.93
13.086
2.844
1.423
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1
3
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24.08
14.174
3.980
7.216
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4
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4
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24.90
14.807
3.829
8.549
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4
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1
4
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25.61
12.683
4.054
7.134
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4
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21.84
14.786
5.342
6.605
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19.21
16.173
5.658
6.803
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4
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4
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17.76
16.585
6.912
6.071
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4
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16.65
16.329
6.786
4.661
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17.94
15.826
8.169
6.473
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4
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19.81
16.403
8.689
7.687
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4
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17.27
15.943
9.058
5.259
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1
4
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14.82
16.043
8.087
4.102
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4
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4
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13.95
14.825
7.944
3.292
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4
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1
4
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13.52
14.521
8.919
2.334
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4
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1
4
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14.41
15.289
9.886
2.217
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4
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1
4
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13.10
13.411
8.763
1.574
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4
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1
4
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11.79
12.605
7.705
1.743
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4
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1
4
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8.29
11.516
7.614
0.983
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4
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1
4
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12.93
12.904
6.695
2.716
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4
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1
4
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13.64
14.010
6.851
3.451
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4
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1
4
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19.40
15.397
9.700
8.452
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5
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1
5
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21.05
15.909
9.947
9.788
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5
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1
5
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19.19
14.014
9.240
8.266
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5
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1
5
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19.89
15.636
10.922
7.429
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5
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20.29
14.452
11.746
7.223
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5
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1
5
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20.23
14.868
12.835
6.255
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5
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1
5
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20.59
14.968
12.197
4.961
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5
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19.87
13.927
14.014
6.078
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5
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21.42
14.187
15.094
6.985
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5
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18.23
14.179
14.404
4.633
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5
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1
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15.25
14.361
13.056
3.980
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5
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1
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12.12
13.121
12.384
3.543
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5
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1
5
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11.35
12.522
11.269
4.070
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5
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1
5
1.00
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10.55
11.447
10.905
3.422
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5
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1
5
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10.12
11.339
11.829
2.391
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5
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1
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1.00
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10.60
10.367
11.937
1.366
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5
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1
5
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10.89
9.374
11.209
1.192
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5
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1
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9.88
10.628
13.021
0.529
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5
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1
5
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9.87
11.690
13.875
0.670
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5
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1
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1.00
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10.78
11.798
14.872
-0.219
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5
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1
5
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9.26
12.605
13.780
1.624
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5
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1
5
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10.12
12.358
12.744
2.451
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5
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1
5
1.00
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22.62
13.142
16.208
7.422
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6
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1
6
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20.94
13.849
17.171
8.325
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6
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1
6
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21.79
11.876
15.601
7.923
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6
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1
6
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21.70
12.813
16.971
6.056
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6
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6
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20.03
13.481
18.177
5.636
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6
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1
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20.95
12.852
18.562
4.315
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6
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1
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18.44
12.696
17.370
3.533
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6
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1
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23.23
11.451
19.148
4.360
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6
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1
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27.05
11.399
20.544
4.683
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6
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1
6
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20.36
10.940
18.905
2.945
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6
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1
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17.34
11.534
17.543
2.702
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6
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1
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15.27
10.602
16.446
3.029
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6
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1
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13.53
10.671
15.527
4.037
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6
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1
6
1.00
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13.30
9.691
14.669
4.005
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6
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1
6
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13.08
8.932
15.050
2.905
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6
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1
6
1.00
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13.47
7.744
14.508
2.379
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6
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1
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15.60
7.120
13.524
2.806
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6
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1
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13.30
7.297
15.202
1.261
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6
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1
6
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12.90
7.918
16.290
0.710
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6
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1
6
1.00
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10.63
7.354
16.828
-0.382
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6
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1
6
1.00
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13.72
9.036
16.811
1.199
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6
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1
6
1.00
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13.71
9.478
16.143
2.287
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6
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1
6
1.00
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29.12
10.203
20.960
5.671
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7
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1
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31.03
10.554
22.387
5.932
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7
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1
7
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29.68
10.064
19.993
6.769
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7
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1
7
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26.98
8.867
20.921
4.757
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7
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21.91
8.637
22.005
3.829
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7
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1
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19.79
7.523
21.572
2.915
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7
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1
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17.21
7.657
20.158
2.654
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7
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20.16
6.105
21.680
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A
C3'
DG
1
7
1.00
1
C
22.67
5.580
23.015
3.402
A
O3'
DG
7
ATOM
A
O3'
DG
1
7
1.00
1
O
18.97
5.346
20.739
2.525
A
C2'
DG
7
ATOM
A
C2'
DG
1
7
1.00
1
C
16.99
6.387
19.698
2.192
A
C1'
DG
7
ATOM
A
C1'
DG
1
7
1.00
1
C
15.96
6.057
18.450
2.873
A
N9
DG
7
ATOM
A
N9
DG
1
7
1.00
1
N
16.22
6.760
17.895
3.921
A
C8
DG
7
ATOM
A
C8
DG
1
7
1.00
1
C
16.52
6.235
16.789
4.358
A
N7
DG
7
ATOM
A
N7
DG
1
7
1.00
1
N
15.59
5.116
16.603
3.556
A
C5
DG
7
ATOM
A
C5
DG
1
7
1.00
1
C
15.51
4.171
15.566
3.580
A
C6
DG
7
ATOM
A
C6
DG
1
7
1.00
1
C
18.53
4.128
14.595
4.335
A
O6
DG
7
ATOM
A
O6
DG
1
7
1.00
1
O
16.97
3.200
15.740
2.607
A
N1
DG
7
ATOM
A
N1
DG
1
7
1.00
1
N
16.37
3.157
16.785
1.716
A
C2
DG
7
ATOM
A
C2
DG
1
7
1.00
1
C
16.78
2.116
16.737
0.874
A
N2
DG
7
ATOM
A
N2
DG
1
7
1.00
1
N
15.66
4.037
17.773
1.688
A
N3
DG
7
ATOM
A
N3
DG
1
7
1.00
1
N
16.28
4.986
17.622
2.637
A
C4
DG
7
ATOM
A
C4
DG
1
7
1.00
1
C
24.93
4.171
23.224
4.132
A
P
DG
8
ATOM
A
P
DG
1
8
1.00
1
P
24.67
3.863
24.663
4.057
A
OP1
DG
8
ATOM
A
OP1
DG
1
8
1.00
1
O
24.30
4.241
22.586
5.473
A
OP2
DG
8
ATOM
A
OP2
DG
1
8
1.00
1
O
25.73
3.187
22.361
3.215
A
O5'
DG
8
ATOM
A
O5'
DG
1
8
1.00
1
O
27.55
2.862
22.755
1.865
A
C5'
DG
8
ATOM
A
C5'
DG
1
8
1.00
1
C
28.68
1.548
22.088
1.480
A
C4'
DG
8
ATOM
A
C4'
DG
1
8
1.00
1
C
27.72
1.665
20.678
1.738
A
O4'
DG
8
ATOM
A
O4'
DG
1
8
1.00
1
O
29.37
0.321
22.578
2.235
A
C3'
DG
8
ATOM
A
C3'
DG
1
8
1.00
1
C
32.09
-0.802
22.868
1.363
A
O3'
DG
8
ATOM
A
O3'
DG
1
8
1.00
1
O
27.54
-0.004
21.463
3.203
A
C2'
DG
8
ATOM
A
C2'
DG
1
8
1.00
1
C
26.07
0.551
20.240
2.515
A
C1'
DG
8
ATOM
A
C1'
DG
1
8
1.00
1
C
23.57
1.015
19.226
3.474
A
N9
DG
8
ATOM
A
N9
DG
1
8
1.00
1
N
23.33
2.086
19.347
4.330
A
C8
DG
8
ATOM
A
C8
DG
1
8
1.00
1
C
22.62
2.268
18.307
5.080
A
N7
DG
8
ATOM
A
N7
DG
1
8
1.00
1
N
22.92
1.262
17.435
4.683
A
C5
DG
8
ATOM
A
C5
DG
1
8
1.00
1
C
23.43
0.963
16.134
5.145
A
C6
DG
8
ATOM
A
C6
DG
1
8
1.00
1
C
23.47
1.552
15.488
6.019
A
O6
DG
8
ATOM
A
O6
DG
1
8
1.00
1
O
24.02
-0.147
15.597
4.494
A
N1
DG
8
ATOM
A
N1
DG
1
8
1.00
1
N
22.76
-0.867
16.230
3.513
A
C2
DG
8
ATOM
A
C2
DG
1
8
1.00
1
C
22.45
-1.895
15.536
3.014
A
N2
DG
8
ATOM
A
N2
DG
1
8
1.00
1
N
23.62
-0.598
17.457
3.076
A
N3
DG
8
ATOM
A
N3
DG
1
8
1.00
1
N
22.98
0.477
17.990
3.700
A
C4
DG
8
ATOM
A
C4
DG
1
8
1.00
1
C
28.19
3.924
19.395
-0.422
A
O
HOH
9
HETATM
B
O
HOH
2
1.00
1
O
38.84
14.443
15.332
1.353
A
O
HOH
10
HETATM
B
O
HOH
2
1.00
1
O
45.15
12.024
3.681
-8.393
A
O
HOH
11
HETATM
B
O
HOH
2
1.00
1
O
28.77
4.505
18.528
6.664
A
O
HOH
12
HETATM
B
O
HOH
2
1.00
1
O
71.69
9.162
16.728
7.834
A
O
HOH
13
HETATM
B
O
HOH
2
1.00
1
O
41.11
14.387
0.165
8.995
A
O
HOH
14
HETATM
B
O
HOH
2
1.00
1
O
52.58
9.600
13.325
6.905
A
O
HOH
15
HETATM
B
O
HOH
2
1.00
1
O
51.63
13.190
20.119
8.643
A
O
HOH
16
HETATM
B
O
HOH
2
1.00
1
O
41.35
9.812
3.334
-5.001
A
O
HOH
17
HETATM
B
O
HOH
2
1.00
1
O
24.04
4.202
16.104
7.630
A
O
HOH
18
HETATM
B
O
HOH
2
1.00
1
O
25.75
-2.693
18.068
1.127
A
O
HOH
19
HETATM
B
O
HOH
2
1.00
1
O
21.94
8.915
8.915
0.000
A
O
HOH
20
HETATM
B
O
HOH
2
0.50
1
O
44.08
17.262
7.571
10.560
A
O
HOH
21
HETATM
B
O
HOH
2
1.00
1
O
18.59
7.961
1.574
-3.928
A
O
HOH
22
HETATM
B
O
HOH
2
1.00
1
O
18.19
4.323
-1.500
-2.647
A
O
HOH
23
HETATM
B
O
HOH
2
1.00
1
O
67.54
8.720
2.580
-0.099
A
O
HOH
24
HETATM
B
O
HOH
2
1.00
1
O
61.61
16.711
17.648
6.692
A
O
HOH
25
HETATM
B
O
HOH
2
1.00
1
O
50.30
0.312
6.625
11.280
A
O
HOH
26
HETATM
B
O
HOH
2
1.00
1
O
69.35
7.592
-1.136
-8.114
A
O
HOH
27
HETATM
B
O
HOH
2
1.00
1
O
57.17
4.822
-5.971
-3.804
A
O
HOH
28
HETATM
B
O
HOH
2
1.00
1
O
52.92
3.495
-4.345
-2.128
A
O
HOH
29
HETATM
B
O
HOH
2
1.00
1
O
46.66
11.651
-3.204
6.272
A
O
HOH
30
HETATM
B
O
HOH
2
1.00
1
O
45.91
12.618
23.107
10.325
A
O
HOH
31
HETATM
B
O
HOH
2
1.00
1
O
80.98
17.739
12.254
10.029
A
O
HOH
32
HETATM
B
O
HOH
2
1.00
1
O
35.99
7.636
9.882
2.297
A
O
HOH
33
HETATM
B
O
HOH
2
1.00
1
O
50.67
1.071
18.831
-1.102
A
O
HOH
34
HETATM
B
O
HOH
2
1.00
1
O
55.10
7.506
3.152
-7.931
A
O
HOH
35
HETATM
B
O
HOH
2
1.00
1
O
41.08
6.751
11.139
4.467
A
O
HOH
36
HETATM
B
O
HOH
2
1.00
1
O
76.26
6.920
6.010
-4.700
A
O
HOH
37
HETATM
B
O
HOH
2
1.00
1
O
34.13
9.028
4.644
-1.008
A
O
HOH
38
HETATM
B
O
HOH
2
1.00
1
O
54.22
9.318
5.381
2.001
A
O
HOH
39
HETATM
B
O
HOH
2
1.00
1
O
77.67
15.813
11.586
12.467
A
O
HOH
40
HETATM
B
O
HOH
2
1.00
1
O
53.97
10.007
9.015
4.179
A
O
HOH
41
HETATM
B
O
HOH
2
1.00
1
O
68.03
15.059
17.062
10.406
A
O
HOH
42
HETATM
B
O
HOH
2
1.00
1
O
63.30
-1.127
16.030
-1.745
A
O
HOH
43
HETATM
B
O
HOH
2
1.00
1
O
93.72
-4.670
23.362
2.019
A
O
HOH
44
HETATM
B
O
HOH
2
1.00
1
O
61.10
14.409
6.014
10.637
A
O
HOH
45
HETATM
B
O
HOH
2
1.00
1
O
98.31
17.331
1.830
8.388
A
O
HOH
46
HETATM
B
O
HOH
2
1.00
1
O
80.79
5.554
5.554
12.415
A
O
HOH
47
HETATM
B
O
HOH
2
0.50
1
O
0.023063
0.000000
0.000000
0.000000
0.023063
0.000000
0.000000
0.000000
0.040274
0.00000
0.00000
0.00000
Eisenstein, M.
Shakked, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
43.360
43.360
24.830
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
H
N
74
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
248
662
678
10.1006/jmbi.1995.0250
7752232
Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition.
1995
US
J.Biomol.Struct.Dyn.
JBSDD6
0646
0739-1102
5
199
217
The Crystal Structure of d(CCCCGGGG): A New A-Form Variant with an Extended Backbone Conformation
1987
10.2210/pdb187d/pdb
pdb_0000187d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
288.00
1
DIFFRACTOMETER
NICOLET
x-ray
1
1.0
2428.593
DNA (5'-D(*CP*CP*CP*CP*GP*GP*GP*G)-3')
1
syn
polymer
18.015
water
39
nat
water
no
no
(DC)(DC)(DC)(DC)(DG)(DG)(DG)(DG)
CCCCGGGG
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
2.40
48.81
VAPOR DIFFUSION
7.00
pH 7.00, VAPOR DIFFUSION
WATER
1
MPD
1
NA CACODYLATE
1
SPERMINE
1
MGCL2
1
WATER
2
MPD
2
6.198
1
19
A
1
A
8
-2.492
A_DC1:DG8_A
1
-11.055
0.432
-0.161
-0.218
7.215
1
19
A
2
A
7
-2.283
A_DC2:DG7_A
2
-5.950
0.244
0.178
-0.172
5.076
1
19
A
3
A
6
-1.390
A_DC3:DG6_A
3
-15.574
0.189
-0.037
-0.178
-6.935
1
19
A
4
A
5
-1.356
A_DC4:DG5_A
4
-1.615
0.171
0.248
-0.202
6.935
1
19
A
5
A
4
-1.356
A_DG5:DC4_A
5
-1.615
-0.171
0.248
-0.202
-5.076
1
19
A
6
A
3
-1.390
A_DG6:DC3_A
6
-15.574
-0.189
-0.037
-0.178
-7.215
1
19
A
7
A
2
-2.283
A_DG7:DC2_A
7
-5.950
-0.244
0.178
-0.172
-6.198
1
19
A
8
A
1
-2.492
A_DG8:DC1_A
8
-11.055
-0.432
-0.161
-0.218
2.779
34.836
A
A
1
2
13.780
A
A
8
7
3.257
8.153
0.148
-1.507
AA_DC1DC2:DG7DG8_AA
1
-4.800
8.113
33.565
-3.684
-0.934
3.185
31.549
A
A
2
3
5.089
A
A
7
6
3.379
2.763
-0.310
-2.076
AA_DC2DC3:DG6DG7_AA
2
0.457
-0.841
31.428
-4.335
0.656
3.421
36.099
A
A
3
4
8.673
A
A
6
5
3.691
5.352
-0.020
-1.565
AA_DC3DC4:DG5DG6_AA
3
-2.475
4.010
35.630
-3.354
-0.351
3.211
22.890
A
A
4
5
-6.147
A
A
5
4
3.008
-2.435
0.000
-2.094
AA_DC4DG5:DC4DG5_AA
4
0.000
0.000
22.762
-4.452
0.000
3.421
36.099
A
A
5
6
8.673
A
A
4
3
3.691
5.352
0.020
-1.565
AA_DG5DG6:DC3DC4_AA
5
2.475
-4.010
35.630
-3.354
0.351
3.185
31.549
A
A
6
7
5.089
A
A
3
2
3.379
2.763
0.310
-2.076
AA_DG6DG7:DC2DC3_AA
6
-0.457
0.841
31.428
-4.335
-0.656
2.779
34.836
A
A
7
8
13.780
A
A
2
1
3.257
8.153
-0.148
-1.507
AA_DG7DG8:DC1DC2_AA
7
4.800
-8.113
33.565
-3.684
0.934
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1995-02-07
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1994-09-02
REL
HOH
water
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
HOH
46
2
HOH
HOH
46
A
HOH
47
2
HOH
HOH
47
A
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
C
3
n
3
DC
3
A
C
4
n
4
DC
4
A
G
5
n
5
DG
5
A
G
6
n
6
DG
6
A
G
7
n
7
DG
7
A
G
8
n
8
DG
8
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
20
B
HOH
1
A
HOH
47
B
HOH
1
1.85
0.30
108.30
110.15
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
-5.49
0.80
109.40
103.91
A
A
A
O5'
C5'
C4'
DC
DC
DC
3
3
3
N
1
-7.70
1.20
119.70
112.00
A
A
A
C3'
O3'
P
DC
DC
DG
4
4
5
Y
0.1340000
2.250
8.000
816
1
2.000
TR
isotropic
TR
isotropic
2.250
8.000
39
200
0
161
0
0.006
0.020
0.019
0.040
1.438
3.000
2.250
5.000
1.292
3.000
2.317
5.000
0.013
0.030
0.034
0.060
0.007
0.020
0.010
0.040
0.129
0.200
0.160
0.200
fix
fix
2.250
187D
1
refinement
NUCLSQ
HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
8
A
N1
DG
8
7_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
8
A
O6
DG
8
7_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
8
A
N2
DG
8
7_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
A
DG
7
A
N1
DG
7
7_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
A
DG
7
A
O6
DG
7
7_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
A
DG
7
A
N2
DG
7
7_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
A
DG
6
A
N1
DG
6
7_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
A
DG
6
A
O6
DG
6
7_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
A
DG
6
A
N2
DG
6
7_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
A
DG
5
A
N1
DG
5
7_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
A
DG
5
A
O6
DG
5
7_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
A
DG
5
A
N2
DG
5
7_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
A
DC
4
A
N3
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
A
DC
4
A
O2
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
A
DC
4
A
N4
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
3
A
N3
DC
3
7_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
3
A
O2
DC
3
7_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
3
A
N4
DC
3
7_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
A
DC
2
A
N3
DC
2
7_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
A
DC
2
A
O2
DC
2
7_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
A
DC
2
A
N4
DC
2
7_555
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
A
DC
1
A
N3
DC
1
7_555
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
A
DC
1
A
O2
DC
1
7_555
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
A
DC
1
A
N4
DC
1
7_555
DNA
A-DNA, DOUBLE HELIX, DNA
187D
PDB
1
187D
1
8
187D
1
8
187D
A
1
1
8
96
P 43 21 2