0.023397 0.000000 0.000000 0.000000 0.023397 0.000000 0.000000 0.000000 0.040700 0.00000 0.00000 0.00000 Eisenstein, M. Shakked, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.740 42.740 24.570 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N H N 74 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 248 662 678 10.1006/jmbi.1995.0250 7752232 Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. 1995 DK Acta Crystallogr.,Sect.B ASBSDK 0622 0108-7681 44 625 628 Low-Temperature Study of the A-DNA Fragment d(GGGCGCCC) 1988 10.2210/pdb188d/pdb pdb_0000188d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 115.00 1 DIFFRACTOMETER RIGAKU AFC-5 x-ray 1 1.0 ROTATING ANODE 2428.593 DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3') 1 syn polymer 18.015 water 42 nat water no no (DG)(DG)(DG)(DC)(DG)(DC)(DC)(DC) GGGCGCCC A polydeoxyribonucleotide n n n n n n n n 2.31 46.76 VAPOR DIFFUSION 7.00 pH 7.00, VAPOR DIFFUSION, temperature 292.00K 292.00 WATER 1 MPD 1 NA CACODYLATE 1 MGCL2 1 WATER 2 MPD 2 -5.353 1 19 A 1 A 8 -1.164 A_DG1:DC8_A 1 -13.658 -0.452 -0.123 -0.220 1.962 1 19 A 2 A 7 -0.840 A_DG2:DC7_A 2 -10.181 -0.175 0.290 -0.123 4.248 1 19 A 3 A 6 -3.074 A_DG3:DC6_A 3 -12.181 0.065 0.443 -0.140 -0.632 1 19 A 4 A 5 0.932 A_DC4:DG5_A 4 -4.595 -0.003 0.252 -0.072 0.632 1 19 A 5 A 4 0.932 A_DG5:DC4_A 5 -4.595 0.003 0.252 -0.072 -4.248 1 19 A 6 A 3 -3.074 A_DC6:DG3_A 6 -12.181 -0.065 0.443 -0.140 -1.962 1 19 A 7 A 2 -0.840 A_DC7:DG2_A 7 -10.181 0.175 0.290 -0.123 5.353 1 19 A 8 A 1 -1.164 A_DC8:DG1_A 8 -13.658 0.452 -0.123 -0.220 2.307 33.486 A A 1 2 20.110 A A 8 7 2.959 11.364 0.498 -1.381 AA_DG1DG2:DC7DC8_AA 1 -1.711 3.028 31.505 -3.954 -1.099 2.685 34.866 A A 2 3 9.777 A A 7 6 3.037 5.832 0.057 -1.922 AA_DG2DG3:DC6DC7_AA 2 0.210 -0.352 34.389 -3.988 -0.067 3.136 37.095 A A 3 4 6.978 A A 6 5 3.323 4.421 0.479 -1.712 AA_DG3DC4:DG5DC6_AA 3 4.071 -6.425 36.621 -3.279 -0.212 2.908 21.974 A A 4 5 8.617 A A 5 4 3.221 3.273 0.000 -1.889 AA_DC4DG5:DC4DG5_AA 4 0.000 0.000 21.732 -6.146 0.000 3.136 37.095 A A 5 6 6.978 A A 4 3 3.323 4.421 -0.479 -1.712 AA_DG5DC6:DG3DC4_AA 5 -4.071 6.425 36.621 -3.279 0.212 2.685 34.866 A A 6 7 9.777 A A 3 2 3.037 5.832 -0.057 -1.922 AA_DC6DC7:DG2DG3_AA 6 -0.210 0.352 34.389 -3.988 0.067 2.307 33.486 A A 7 8 20.110 A A 2 1 2.959 11.364 -0.498 -1.381 AA_DC7DC8:DG1DG2_AA 7 1.711 -3.028 31.505 -3.954 1.099 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1995-02-07 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1994-09-02 REL HOH water HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 50 2 HOH HOH 50 A G 1 n 1 DG 1 A G 2 n 2 DG 2 A G 3 n 3 DG 3 A C 4 n 4 DC 4 A G 5 n 5 DG 5 A C 6 n 6 DC 6 A C 7 n 7 DC 7 A C 8 n 8 DC 8 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 26 B HOH 1 A HOH 37 B HOH 1 A HOH 50 B HOH 1 8.18 1.20 110.70 118.88 A A A O5' P OP1 DG DG DG 2 2 2 N 1 3.32 0.30 108.30 111.62 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 1.83 0.30 108.30 110.13 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 17.81 1.20 119.70 137.51 A A A C3' O3' P DG DG DC 5 5 6 Y 0.1830000 2.200 8.000 1524 1 2.000 TR isotropic TR isotropic 2.200 8.000 42 203 0 161 0 0.006 0.020 0.016 0.040 1.353 3.000 2.127 5.000 1.593 3.000 2.087 5.000 0.016 0.030 0.038 0.060 0.005 0.020 0.008 0.030 0.127 0.200 0.120 0.200 fix fix 1.700 188D 1 refinement NUCLSQ HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 8 A N3 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 8 A O2 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 8 A N4 DC 8 7_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 7 A N3 DC 7 7_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 7 A O2 DC 7 7_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 7 A N4 DC 7 7_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 A DC 6 A N3 DC 6 7_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 A DC 6 A O2 DC 6 7_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 A DC 6 A N4 DC 6 7_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 A DG 5 A N1 DG 5 7_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 A DG 5 A O6 DG 5 7_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 A DG 5 A N2 DG 5 7_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 A DC 4 A N3 DC 4 7_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 A DC 4 A O2 DC 4 7_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 A DC 4 A N4 DC 4 7_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 3 A N1 DG 3 7_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 3 A O6 DG 3 7_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 3 A N2 DG 3 7_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 A DG 2 A N1 DG 2 7_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 A DG 2 A O6 DG 2 7_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 A DG 2 A N2 DG 2 7_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 1 A N1 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 1 A O6 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 1 A N2 DG 1 7_555 DNA A-DNA, DOUBLE HELIX, DNA 188D PDB 1 188D 1 8 188D 1 8 188D A 1 1 8 96 P 43 21 2