0.023397
0.000000
0.000000
0.000000
0.023397
0.000000
0.000000
0.000000
0.040700
0.00000
0.00000
0.00000
Eisenstein, M.
Shakked, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
42.740
42.740
24.570
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
H
N
74
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
248
662
678
10.1006/jmbi.1995.0250
7752232
Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition.
1995
DK
Acta Crystallogr.,Sect.B
ASBSDK
0622
0108-7681
44
625
628
Low-Temperature Study of the A-DNA Fragment d(GGGCGCCC)
1988
10.2210/pdb188d/pdb
pdb_0000188d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
115.00
1
DIFFRACTOMETER
RIGAKU AFC-5
x-ray
1
1.0
ROTATING ANODE
2428.593
DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3')
1
syn
polymer
18.015
water
42
nat
water
no
no
(DG)(DG)(DG)(DC)(DG)(DC)(DC)(DC)
GGGCGCCC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
2.31
46.76
VAPOR DIFFUSION
7.00
pH 7.00, VAPOR DIFFUSION, temperature 292.00K
292.00
WATER
1
MPD
1
NA CACODYLATE
1
MGCL2
1
WATER
2
MPD
2
-5.353
1
19
A
1
A
8
-1.164
A_DG1:DC8_A
1
-13.658
-0.452
-0.123
-0.220
1.962
1
19
A
2
A
7
-0.840
A_DG2:DC7_A
2
-10.181
-0.175
0.290
-0.123
4.248
1
19
A
3
A
6
-3.074
A_DG3:DC6_A
3
-12.181
0.065
0.443
-0.140
-0.632
1
19
A
4
A
5
0.932
A_DC4:DG5_A
4
-4.595
-0.003
0.252
-0.072
0.632
1
19
A
5
A
4
0.932
A_DG5:DC4_A
5
-4.595
0.003
0.252
-0.072
-4.248
1
19
A
6
A
3
-3.074
A_DC6:DG3_A
6
-12.181
-0.065
0.443
-0.140
-1.962
1
19
A
7
A
2
-0.840
A_DC7:DG2_A
7
-10.181
0.175
0.290
-0.123
5.353
1
19
A
8
A
1
-1.164
A_DC8:DG1_A
8
-13.658
0.452
-0.123
-0.220
2.307
33.486
A
A
1
2
20.110
A
A
8
7
2.959
11.364
0.498
-1.381
AA_DG1DG2:DC7DC8_AA
1
-1.711
3.028
31.505
-3.954
-1.099
2.685
34.866
A
A
2
3
9.777
A
A
7
6
3.037
5.832
0.057
-1.922
AA_DG2DG3:DC6DC7_AA
2
0.210
-0.352
34.389
-3.988
-0.067
3.136
37.095
A
A
3
4
6.978
A
A
6
5
3.323
4.421
0.479
-1.712
AA_DG3DC4:DG5DC6_AA
3
4.071
-6.425
36.621
-3.279
-0.212
2.908
21.974
A
A
4
5
8.617
A
A
5
4
3.221
3.273
0.000
-1.889
AA_DC4DG5:DC4DG5_AA
4
0.000
0.000
21.732
-6.146
0.000
3.136
37.095
A
A
5
6
6.978
A
A
4
3
3.323
4.421
-0.479
-1.712
AA_DG5DC6:DG3DC4_AA
5
-4.071
6.425
36.621
-3.279
0.212
2.685
34.866
A
A
6
7
9.777
A
A
3
2
3.037
5.832
-0.057
-1.922
AA_DC6DC7:DG2DG3_AA
6
-0.210
0.352
34.389
-3.988
0.067
2.307
33.486
A
A
7
8
20.110
A
A
2
1
2.959
11.364
-0.498
-1.381
AA_DC7DC8:DG1DG2_AA
7
1.711
-3.028
31.505
-3.954
1.099
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1995-02-07
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1994-09-02
REL
HOH
water
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
HOH
46
2
HOH
HOH
46
A
HOH
47
2
HOH
HOH
47
A
HOH
48
2
HOH
HOH
48
A
HOH
49
2
HOH
HOH
49
A
HOH
50
2
HOH
HOH
50
A
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
G
3
n
3
DG
3
A
C
4
n
4
DC
4
A
G
5
n
5
DG
5
A
C
6
n
6
DC
6
A
C
7
n
7
DC
7
A
C
8
n
8
DC
8
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
26
B
HOH
1
A
HOH
37
B
HOH
1
A
HOH
50
B
HOH
1
8.18
1.20
110.70
118.88
A
A
A
O5'
P
OP1
DG
DG
DG
2
2
2
N
1
3.32
0.30
108.30
111.62
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
1.83
0.30
108.30
110.13
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
17.81
1.20
119.70
137.51
A
A
A
C3'
O3'
P
DG
DG
DC
5
5
6
Y
0.1830000
2.200
8.000
1524
1
2.000
TR
isotropic
TR
isotropic
2.200
8.000
42
203
0
161
0
0.006
0.020
0.016
0.040
1.353
3.000
2.127
5.000
1.593
3.000
2.087
5.000
0.016
0.030
0.038
0.060
0.005
0.020
0.008
0.030
0.127
0.200
0.120
0.200
fix
fix
1.700
188D
1
refinement
NUCLSQ
HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
8
A
N3
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
8
A
O2
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
8
A
N4
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
7
A
N3
DC
7
7_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
7
A
O2
DC
7
7_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
7
A
N4
DC
7
7_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
A
DC
6
A
N3
DC
6
7_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
A
DC
6
A
O2
DC
6
7_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
A
DC
6
A
N4
DC
6
7_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
A
DG
5
A
N1
DG
5
7_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
A
DG
5
A
O6
DG
5
7_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
A
DG
5
A
N2
DG
5
7_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
A
DC
4
A
N3
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
A
DC
4
A
O2
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
A
DC
4
A
N4
DC
4
7_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
A
DG
3
A
N1
DG
3
7_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
A
DG
3
A
O6
DG
3
7_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
A
DG
3
A
N2
DG
3
7_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
A
DG
2
A
N1
DG
2
7_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
A
DG
2
A
O6
DG
2
7_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
A
DG
2
A
N2
DG
2
7_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
A
DG
1
A
N1
DG
1
7_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
A
DG
1
A
O6
DG
1
7_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
A
DG
1
A
N2
DG
1
7_555
DNA
A-DNA, DOUBLE HELIX, DNA
188D
PDB
1
188D
1
8
188D
1
8
188D
A
1
1
8
96
P 43 21 2