0.023787 0.000000 0.000000 0.000000 0.023787 0.000000 0.000000 0.000000 0.039857 0.00000 0.00000 0.00000 Eisenstein, M. Shakked, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.040 42.040 25.090 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N H N 74 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 248 662 678 10.1006/jmbi.1995.0250 7752232 Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. 1995 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 79 3968 3972 Molecular Structure of the Octamer d(G-G-C-C-G-G-C-C): Modified A-DNA 1982 10.2210/pdb189d/pdb pdb_0000189d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 288.00 1 DIFFRACTOMETER NICOLET x-ray 1 1.0 2428.593 DNA (5'-D(*GP*GP*CP*CP*GP*GP*CP*C)-3') 1 syn polymer 18.015 water 40 nat water no no (DG)(DG)(DC)(DC)(DG)(DG)(DC)(DC) GGCCGGCC A polydeoxyribonucleotide n n n n n n n n 2.28 46.11 VAPOR DIFFUSION 7.00 pH 7.00, VAPOR DIFFUSION WATER 1 MPD 1 NA CACODYLATE 1 SPERMINE 1 MGCL2 1 WATER 2 MPD 2 -7.435 1 19 A 1 A 8 -0.328 A_DG1:DC8_A 1 -9.390 -0.409 -0.205 -0.160 -0.883 1 19 A 2 A 7 2.197 A_DG2:DC7_A 2 -17.169 -0.071 0.129 -0.116 1.648 1 19 A 3 A 6 2.965 A_DC3:DG6_A 3 -15.836 0.247 0.126 -0.170 -3.603 1 19 A 4 A 5 -0.157 A_DC4:DG5_A 4 -9.632 0.324 0.303 -0.194 3.603 1 19 A 5 A 4 -0.157 A_DG5:DC4_A 5 -9.632 -0.324 0.303 -0.194 -1.648 1 19 A 6 A 3 2.965 A_DG6:DC3_A 6 -15.836 -0.247 0.126 -0.170 0.883 1 19 A 7 A 2 2.197 A_DC7:DG2_A 7 -17.169 0.071 0.129 -0.116 7.435 1 19 A 8 A 1 -0.328 A_DC8:DG1_A 8 -9.390 0.409 -0.205 -0.160 2.513 32.884 A A 1 2 19.914 A A 8 7 3.155 11.062 0.473 -1.364 AA_DG1DG2:DC7DC8_AA 1 -1.250 2.249 30.991 -4.100 -1.027 2.929 35.050 A A 2 3 11.243 A A 7 6 3.206 6.731 -0.085 -1.190 AA_DG2DC3:DG6DC7_AA 2 -0.680 1.136 34.411 -2.933 0.045 3.233 37.832 A A 3 4 6.706 A A 6 5 3.420 4.339 -0.147 -1.487 AA_DC3DC4:DG5DG6_AA 3 0.367 -0.567 37.589 -2.862 0.274 2.270 21.146 A A 4 5 19.870 A A 5 4 3.034 7.151 0.000 -1.759 AA_DC4DG5:DC4DG5_AA 4 0.000 0.000 19.913 -7.283 0.000 3.233 37.832 A A 5 6 6.706 A A 4 3 3.420 4.339 0.147 -1.487 AA_DG5DG6:DC3DC4_AA 5 -0.367 0.567 37.589 -2.862 -0.274 2.929 35.050 A A 6 7 11.243 A A 3 2 3.206 6.731 0.085 -1.190 AA_DG6DC7:DG2DC3_AA 6 0.680 -1.136 34.411 -2.933 -0.045 2.513 32.884 A A 7 8 19.914 A A 2 1 3.155 11.062 -0.473 -1.364 AA_DC7DC8:DG1DG2_AA 7 1.250 -2.249 30.991 -4.100 1.027 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1995-02-07 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y NDB 1994-09-02 REL HOH water HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A G 1 n 1 DG 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A C 4 n 4 DC 4 A G 5 n 5 DG 5 A G 6 n 6 DG 6 A C 7 n 7 DC 7 A C 8 n 8 DC 8 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 -5.20 0.80 109.40 104.20 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 2.46 0.30 108.30 110.76 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 4.50 0.30 108.30 112.80 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 -5.57 0.80 109.40 103.83 A A A O5' C5' C4' DC DC DC 8 8 8 N 1 3.76 0.30 108.30 112.06 A A A O4' C1' N1 DC DC DC 8 8 8 N 0.1520000 2.100 8.000 1388 1 2.000 TR isotropic TR isotropic 2.100 8.000 40 201 0 161 0 0.007 0.020 0.021 0.040 1.683 3.000 2.542 5.000 2.134 3.000 2.745 5.000 0.018 0.030 0.050 0.060 0.007 0.020 0.009 0.030 0.084 0.200 0.138 0.200 fix fix refinement NUCLSQ HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 8 A N3 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 8 A O2 DC 8 7_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 8 A N4 DC 8 7_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 7 A N3 DC 7 7_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 7 A O2 DC 7 7_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 7 A N4 DC 7 7_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 A DG 6 A N1 DG 6 7_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 A DG 6 A O6 DG 6 7_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 A DG 6 A N2 DG 6 7_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 A DG 5 A N1 DG 5 7_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 A DG 5 A O6 DG 5 7_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 A DG 5 A N2 DG 5 7_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 A DC 4 A N3 DC 4 7_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 A DC 4 A O2 DC 4 7_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 A DC 4 A N4 DC 4 7_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 3 A N3 DC 3 7_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 3 A O2 DC 3 7_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 3 A N4 DC 3 7_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 A DG 2 A N1 DG 2 7_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 A DG 2 A O6 DG 2 7_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 A DG 2 A N2 DG 2 7_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 1 A N1 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 1 A O6 DG 1 7_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 1 A N2 DG 1 7_555 DNA A-DNA, DOUBLE HELIX, DNA 189D PDB 1 189D 1 8 189D 1 8 189D A 1 1 8 96 P 43 21 2