0.023787
0.000000
0.000000
0.000000
0.023787
0.000000
0.000000
0.000000
0.039857
0.00000
0.00000
0.00000
Eisenstein, M.
Shakked, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
42.040
42.040
25.090
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
H
N
74
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
248
662
678
10.1006/jmbi.1995.0250
7752232
Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition.
1995
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
79
3968
3972
Molecular Structure of the Octamer d(G-G-C-C-G-G-C-C): Modified A-DNA
1982
10.2210/pdb189d/pdb
pdb_0000189d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
288.00
1
DIFFRACTOMETER
NICOLET
x-ray
1
1.0
2428.593
DNA (5'-D(*GP*GP*CP*CP*GP*GP*CP*C)-3')
1
syn
polymer
18.015
water
40
nat
water
no
no
(DG)(DG)(DC)(DC)(DG)(DG)(DC)(DC)
GGCCGGCC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
2.28
46.11
VAPOR DIFFUSION
7.00
pH 7.00, VAPOR DIFFUSION
WATER
1
MPD
1
NA CACODYLATE
1
SPERMINE
1
MGCL2
1
WATER
2
MPD
2
-7.435
1
19
A
1
A
8
-0.328
A_DG1:DC8_A
1
-9.390
-0.409
-0.205
-0.160
-0.883
1
19
A
2
A
7
2.197
A_DG2:DC7_A
2
-17.169
-0.071
0.129
-0.116
1.648
1
19
A
3
A
6
2.965
A_DC3:DG6_A
3
-15.836
0.247
0.126
-0.170
-3.603
1
19
A
4
A
5
-0.157
A_DC4:DG5_A
4
-9.632
0.324
0.303
-0.194
3.603
1
19
A
5
A
4
-0.157
A_DG5:DC4_A
5
-9.632
-0.324
0.303
-0.194
-1.648
1
19
A
6
A
3
2.965
A_DG6:DC3_A
6
-15.836
-0.247
0.126
-0.170
0.883
1
19
A
7
A
2
2.197
A_DC7:DG2_A
7
-17.169
0.071
0.129
-0.116
7.435
1
19
A
8
A
1
-0.328
A_DC8:DG1_A
8
-9.390
0.409
-0.205
-0.160
2.513
32.884
A
A
1
2
19.914
A
A
8
7
3.155
11.062
0.473
-1.364
AA_DG1DG2:DC7DC8_AA
1
-1.250
2.249
30.991
-4.100
-1.027
2.929
35.050
A
A
2
3
11.243
A
A
7
6
3.206
6.731
-0.085
-1.190
AA_DG2DC3:DG6DC7_AA
2
-0.680
1.136
34.411
-2.933
0.045
3.233
37.832
A
A
3
4
6.706
A
A
6
5
3.420
4.339
-0.147
-1.487
AA_DC3DC4:DG5DG6_AA
3
0.367
-0.567
37.589
-2.862
0.274
2.270
21.146
A
A
4
5
19.870
A
A
5
4
3.034
7.151
0.000
-1.759
AA_DC4DG5:DC4DG5_AA
4
0.000
0.000
19.913
-7.283
0.000
3.233
37.832
A
A
5
6
6.706
A
A
4
3
3.420
4.339
0.147
-1.487
AA_DG5DG6:DC3DC4_AA
5
-0.367
0.567
37.589
-2.862
-0.274
2.929
35.050
A
A
6
7
11.243
A
A
3
2
3.206
6.731
0.085
-1.190
AA_DG6DC7:DG2DC3_AA
6
0.680
-1.136
34.411
-2.933
-0.045
2.513
32.884
A
A
7
8
19.914
A
A
2
1
3.155
11.062
-0.473
-1.364
AA_DC7DC8:DG1DG2_AA
7
1.250
-2.249
30.991
-4.100
1.027
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1995-02-07
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
NDB
1994-09-02
REL
HOH
water
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
44
A
HOH
45
2
HOH
HOH
45
A
HOH
46
2
HOH
HOH
46
A
HOH
47
2
HOH
HOH
47
A
HOH
48
2
HOH
HOH
48
A
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
C
4
n
4
DC
4
A
G
5
n
5
DG
5
A
G
6
n
6
DG
6
A
C
7
n
7
DC
7
A
C
8
n
8
DC
8
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
-5.20
0.80
109.40
104.20
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
4.50
0.30
108.30
112.80
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
-5.57
0.80
109.40
103.83
A
A
A
O5'
C5'
C4'
DC
DC
DC
8
8
8
N
1
3.76
0.30
108.30
112.06
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
0.1520000
2.100
8.000
1388
1
2.000
TR
isotropic
TR
isotropic
2.100
8.000
40
201
0
161
0
0.007
0.020
0.021
0.040
1.683
3.000
2.542
5.000
2.134
3.000
2.745
5.000
0.018
0.030
0.050
0.060
0.007
0.020
0.009
0.030
0.084
0.200
0.138
0.200
fix
fix
refinement
NUCLSQ
HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
A
DC
8
A
N3
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
A
DC
8
A
O2
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
A
DC
8
A
N4
DC
8
7_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
A
DC
7
A
N3
DC
7
7_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
A
DC
7
A
O2
DC
7
7_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
A
DC
7
A
N4
DC
7
7_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
A
DG
6
A
N1
DG
6
7_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
A
DG
6
A
O6
DG
6
7_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
A
DG
6
A
N2
DG
6
7_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
A
DG
5
A
N1
DG
5
7_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
A
DG
5
A
O6
DG
5
7_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
A
DG
5
A
N2
DG
5
7_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
A
DC
4
A
N3
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
A
DC
4
A
O2
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
A
DC
4
A
N4
DC
4
7_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
A
DC
3
A
N3
DC
3
7_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
A
DC
3
A
O2
DC
3
7_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
A
DC
3
A
N4
DC
3
7_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
A
DG
2
A
N1
DG
2
7_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
A
DG
2
A
O6
DG
2
7_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
A
DG
2
A
N2
DG
2
7_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
A
DG
1
A
N1
DG
1
7_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
A
DG
1
A
O6
DG
1
7_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
A
DG
1
A
N2
DG
1
7_555
DNA
A-DNA, DOUBLE HELIX, DNA
189D
PDB
1
189D
1
8
189D
1
8
189D
A
1
1
8
96
P 43 21 2