0.016069 0.000000 0.012013 0.000000 0.041118 0.000000 0.000000 0.000000 0.030579 0.00000 0.00000 0.00000 Goodsell, D.S. Grzeskowiak, K. Dickerson, R.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 126.78 90.00 62.230 24.320 40.830 Ca 2 40.078 CALCIUM ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N CA N 2 N O N 3 N P N 4 N O N 5 N O N 6 N O N 7 N C N 8 R C N 9 N O N 10 S C N 11 N O N 12 N C N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 N C N 49 R C N 50 N N N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N C N 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 N C N 83 R C Y 84 N N Y 85 N C Y 86 N N Y 87 N C N 88 N C N 89 N O N 90 N N N 91 N C N 92 N N N 93 N N Y 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N O N 110 N P N 111 N O N 112 N O N 113 N O N 114 N C N 115 R C N 116 N O N 117 S C N 118 N O N 119 N C N 120 R C N 121 N N N 122 N C N 123 N O N 124 N N N 125 N C N 126 N O N 127 N C N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing US Biochemistry BICHAW 0033 0006-2960 34 1022 1029 10.1021/bi00003a037 7827018 Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction. 1995 10.2210/pdb196d/pdb pdb_0000196d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 93.00 1 IMAGE PLATE RIGAKU RAXIS II x-ray 1 1.0 3045.004 DNA (5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3') 2 syn polymer 40.078 CALCIUM ION 6 syn non-polymer 18.015 water 114 nat water no no (DC)(DT)(DC)(DT)(DC)(DG)(DA)(DG)(DA)(DG) CTCTCGAGAG A,B polydeoxyribonucleotide n n n n n n n n n n 2.03 39.46 VAPOR DIFFUSION, SITTING DROP VAPOR DIFFUSION, SITTING DROP, temperature 278.00K 278.00 WATER 1 MPD 1 CA ACETATE 1 WATER 2 MPD 2 -8.116 1 19 A 1 B 20 -1.640 A_DC1:DG20_B 1 -13.625 0.212 0.690 -0.098 8.902 1 20 A 2 B 19 -2.456 A_DT2:DA19_B 2 -16.409 -0.246 -0.059 -0.140 -2.039 1 19 A 3 B 18 -5.198 A_DC3:DG18_B 3 -10.624 0.222 0.228 -0.155 2.967 1 20 A 4 B 17 1.294 A_DT4:DA17_B 4 -16.282 -0.217 -0.257 -0.127 2.198 1 19 A 5 B 16 -3.365 A_DC5:DG16_B 5 -4.046 0.067 0.119 0.013 -2.648 1 19 A 6 B 15 -5.240 A_DG6:DC15_B 6 -17.073 -0.121 -0.011 -0.122 -3.538 1 20 A 7 B 14 -0.550 A_DA7:DT14_B 7 -6.180 0.234 -0.202 -0.157 12.555 1 19 A 8 B 13 -1.872 A_DG8:DC13_B 8 -14.233 -0.331 0.268 -0.089 4.549 1 20 A 9 B 12 -2.028 A_DA9:DT12_B 9 -10.027 0.371 0.234 -0.086 5.803 1 19 A 10 B 11 -1.394 A_DG10:DC11_B 10 -16.488 -0.191 0.298 -0.100 2.793 32.669 A A 1 2 4.469 B B 20 19 2.890 2.507 -0.452 -0.339 AA_DC1DT2:DA19DG20_BB 1 3.541 -6.313 32.388 -0.981 1.338 3.504 39.973 A A 2 3 6.536 B B 19 18 3.540 4.459 -0.431 -0.270 AA_DT2DC3:DG18DA19_BB 2 -1.529 2.242 39.706 -0.948 0.441 3.132 28.077 A A 3 4 7.345 B B 18 17 3.154 3.550 -0.176 0.229 AA_DC3DT4:DA17DG18_BB 3 2.425 -5.018 27.753 -0.336 0.915 3.478 40.309 A A 4 5 2.716 B B 17 16 3.414 1.871 0.990 1.467 AA_DT4DC5:DG16DA17_BB 4 0.106 -0.154 40.267 1.906 -1.424 3.573 33.862 A A 5 6 1.222 B B 16 15 3.466 0.711 -1.172 0.936 AA_DC5DG6:DC15DG16_BB 5 -3.024 5.198 33.723 1.483 1.488 3.289 42.296 A A 6 7 5.267 B B 15 14 3.260 3.795 0.206 0.442 AA_DG6DA7:DT14DC15_BB 6 0.942 -1.307 42.123 0.224 -0.189 2.931 28.770 A A 7 8 10.800 B B 14 13 2.993 5.322 0.179 0.197 AA_DA7DG8:DC13DT14_BB 7 -3.753 7.616 28.038 -0.699 -1.131 3.489 38.030 A A 8 9 -2.659 B B 13 12 3.487 -1.732 -0.159 -0.336 AA_DG8DA9:DT12DC13_BB 8 1.601 -2.458 37.960 -0.281 0.461 3.218 34.156 A A 9 10 6.960 B B 12 11 3.291 4.076 0.321 -0.188 AA_DA9DG10:DC11DT12_BB 9 -2.373 4.052 33.839 -0.965 -0.921 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1995-02-27 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1994-11-07 REL REL CA CALCIUM ION HOH water OC7 21 2 CA CA 21 A OC7 22 2 CA CA 22 A OC7 24 2 CA CA 24 A OC7 23 2 CA CA 23 B OC7 25 2 CA CA 25 B OC7 26 2 CA CA 26 B HOH 28 3 HOH HOH 28 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 44 3 HOH HOH 44 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 59 3 HOH HOH 59 A HOH 64 3 HOH HOH 64 A HOH 66 3 HOH HOH 66 A HOH 70 3 HOH HOH 70 A HOH 71 3 HOH HOH 71 A HOH 73 3 HOH HOH 73 A HOH 75 3 HOH HOH 75 A HOH 76 3 HOH HOH 76 A HOH 78 3 HOH HOH 78 A HOH 79 3 HOH HOH 79 A HOH 81 3 HOH HOH 81 A HOH 82 3 HOH HOH 82 A HOH 85 3 HOH HOH 85 A HOH 87 3 HOH HOH 87 A HOH 89 3 HOH HOH 89 A HOH 93 3 HOH HOH 93 A HOH 96 3 HOH HOH 96 A HOH 98 3 HOH HOH 98 A HOH 101 3 HOH HOH 101 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 108 3 HOH HOH 108 A OC7 21 3 HOH HOH 111 A OC7 21 3 HOH HOH 112 A OC7 21 3 HOH HOH 113 A OC7 22 3 HOH HOH 116 A OC7 22 3 HOH HOH 117 A OC7 22 3 HOH HOH 118 A OC7 22 3 HOH HOH 119 A OC7 22 3 HOH HOH 120 A OC7 24 3 HOH HOH 124 A OC7 24 3 HOH HOH 126 A OC7 24 3 HOH HOH 127 A OC7 25 3 HOH HOH 131 A OC7 25 3 HOH HOH 134 A HOH 27 3 HOH HOH 27 B HOH 29 3 HOH HOH 29 B HOH 32 3 HOH HOH 32 B HOH 33 3 HOH HOH 33 B HOH 34 3 HOH HOH 34 B HOH 35 3 HOH HOH 35 B HOH 38 3 HOH HOH 38 B HOH 39 3 HOH HOH 39 B HOH 40 3 HOH HOH 40 B HOH 41 3 HOH HOH 41 B HOH 42 3 HOH HOH 42 B HOH 43 3 HOH HOH 43 B HOH 45 3 HOH HOH 45 B HOH 50 3 HOH HOH 50 B HOH 55 3 HOH HOH 55 B HOH 56 3 HOH HOH 56 B HOH 57 3 HOH HOH 57 B HOH 58 3 HOH HOH 58 B HOH 60 3 HOH HOH 60 B HOH 61 3 HOH HOH 61 B HOH 62 3 HOH HOH 62 B HOH 63 3 HOH HOH 63 B HOH 65 3 HOH HOH 65 B HOH 67 3 HOH HOH 67 B HOH 68 3 HOH HOH 68 B HOH 69 3 HOH HOH 69 B HOH 72 3 HOH HOH 72 B HOH 74 3 HOH HOH 74 B HOH 77 3 HOH HOH 77 B HOH 80 3 HOH HOH 80 B HOH 83 3 HOH HOH 83 B HOH 84 3 HOH HOH 84 B HOH 86 3 HOH HOH 86 B HOH 88 3 HOH HOH 88 B HOH 90 3 HOH HOH 90 B HOH 91 3 HOH HOH 91 B HOH 92 3 HOH HOH 92 B HOH 94 3 HOH HOH 94 B HOH 95 3 HOH HOH 95 B HOH 97 3 HOH HOH 97 B HOH 99 3 HOH HOH 99 B HOH 100 3 HOH HOH 100 B HOH 102 3 HOH HOH 102 B HOH 106 3 HOH HOH 106 B HOH 107 3 HOH HOH 107 B OC7 21 3 HOH HOH 109 B OC7 21 3 HOH HOH 110 B OC7 21 3 HOH HOH 114 B OC7 21 3 HOH HOH 115 B OC7 23 3 HOH HOH 121 B OC7 23 3 HOH HOH 122 B OC7 23 3 HOH HOH 123 B OC7 24 3 HOH HOH 125 B OC7 24 3 HOH HOH 128 B OC7 25 3 HOH HOH 129 B OC7 25 3 HOH HOH 130 B OC7 25 3 HOH HOH 132 B OC7 25 3 HOH HOH 133 B OC7 26 3 HOH HOH 135 B OC7 26 3 HOH HOH 136 B OC7 26 3 HOH HOH 137 B OC7 26 3 HOH HOH 138 B OC7 26 3 HOH HOH 139 B OC7 26 3 HOH HOH 140 B C 1 n 1 DC 1 A T 2 n 2 DT 2 A C 3 n 3 DC 3 A T 4 n 4 DT 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A A 7 n 7 DA 7 A G 8 n 8 DG 8 A A 9 n 9 DA 9 A G 10 n 10 DG 10 A C 11 n 1 DC 11 B T 12 n 2 DT 12 B C 13 n 3 DC 13 B T 14 n 4 DT 14 B C 15 n 5 DC 15 B G 16 n 6 DG 16 B A 17 n 7 DA 17 B G 18 n 8 DG 18 B A 19 n 9 DA 19 B G 20 n 10 DG 20 B author_defined_assembly 2 dimeric A DC 5 A OP2 DC 5 1_555 A CA 22 D CA CA 1_555 A HOH 116 I O HOH 1_555 84.4 A DC 5 A OP2 DC 5 1_555 A CA 22 D CA CA 1_555 A HOH 117 I O HOH 1_555 97.1 A HOH 116 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 117 I O HOH 1_555 70.2 A DC 5 A OP2 DC 5 1_555 A CA 22 D CA CA 1_555 A HOH 118 I O HOH 1_555 90.1 A HOH 116 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 118 I O HOH 1_555 72.2 A HOH 117 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 118 I O HOH 1_555 140.8 A DC 5 A OP2 DC 5 1_555 A CA 22 D CA CA 1_555 A HOH 119 I O HOH 1_555 88.7 A HOH 116 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 119 I O HOH 1_555 144.5 A HOH 117 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 119 I O HOH 1_555 76.3 A HOH 118 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 119 I O HOH 1_555 142.7 A DC 5 A OP2 DC 5 1_555 A CA 22 D CA CA 1_555 A HOH 120 I O HOH 1_555 77.2 A HOH 116 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 120 I O HOH 1_555 138.1 A HOH 117 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 120 I O HOH 1_555 148.7 A HOH 118 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 120 I O HOH 1_555 70.5 A HOH 119 I O HOH 1_555 A CA 22 D CA CA 1_555 A HOH 120 I O HOH 1_555 72.8 A HOH 111 I O HOH 1_555 A CA 21 C CA CA 1_555 A HOH 112 I O HOH 1_555 75.3 A HOH 111 I O HOH 1_555 A CA 21 C CA CA 1_555 A HOH 113 I O HOH 1_555 90.6 A HOH 112 I O HOH 1_555 A CA 21 C CA CA 1_555 A HOH 113 I O HOH 1_555 83.3 A HOH 111 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 109 J O HOH 1_555 74.1 A HOH 112 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 109 J O HOH 1_555 122.7 A HOH 113 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 109 J O HOH 1_555 143.3 A HOH 111 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 110 J O HOH 1_555 136.5 A HOH 112 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 110 J O HOH 1_555 147.8 A HOH 113 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 110 J O HOH 1_555 90.4 B HOH 109 J O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 110 J O HOH 1_555 79.6 A HOH 111 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 114 J O HOH 1_555 148.5 A HOH 112 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 114 J O HOH 1_555 74.6 A HOH 113 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 114 J O HOH 1_555 77.0 B HOH 109 J O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 114 J O HOH 1_555 131.4 B HOH 110 J O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 114 J O HOH 1_555 73.2 A HOH 111 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 115 J O HOH 1_555 105.7 A HOH 112 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 115 J O HOH 1_555 75.2 A HOH 113 I O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 115 J O HOH 1_555 148.4 B HOH 109 J O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 115 J O HOH 1_555 68.3 B HOH 110 J O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 115 J O HOH 1_555 95.5 B HOH 114 J O HOH 1_555 A CA 21 C CA CA 1_555 B HOH 115 J O HOH 1_555 75.1 A HOH 124 I O HOH 1_555 A CA 24 E CA CA 1_555 A HOH 126 I O HOH 1_555 71.2 A HOH 124 I O HOH 1_555 A CA 24 E CA CA 1_555 A HOH 127 I O HOH 1_555 85.0 A HOH 126 I O HOH 1_555 A CA 24 E CA CA 1_555 A HOH 127 I O HOH 1_555 150.6 A HOH 124 I O HOH 1_555 A CA 24 E CA CA 1_555 B HOH 125 J O HOH 1_555 97.5 A HOH 126 I O HOH 1_555 A CA 24 E CA CA 1_555 B HOH 125 J O HOH 1_555 84.1 A HOH 127 I O HOH 1_555 A CA 24 E CA CA 1_555 B HOH 125 J O HOH 1_555 82.1 A HOH 124 I O HOH 1_555 A CA 24 E CA CA 1_555 B HOH 128 J O HOH 1_555 152.5 A HOH 126 I O HOH 1_555 A CA 24 E CA CA 1_555 B HOH 128 J O HOH 1_555 128.0 A HOH 127 I O HOH 1_555 A CA 24 E CA CA 1_555 B HOH 128 J O HOH 1_555 69.9 B HOH 125 J O HOH 1_555 A CA 24 E CA CA 1_555 B HOH 128 J O HOH 1_555 68.9 A HOH 131 I O HOH 1_555 B CA 25 G CA CA 1_555 A HOH 134 I O HOH 1_555 73.3 A HOH 131 I O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 129 J O HOH 1_555 136.5 A HOH 134 I O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 129 J O HOH 1_555 98.5 A HOH 131 I O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 130 J O HOH 1_555 141.7 A HOH 134 I O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 130 J O HOH 1_555 73.6 B HOH 129 J O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 130 J O HOH 1_555 67.6 A HOH 131 I O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 132 J O HOH 1_555 132.1 A HOH 134 I O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 132 J O HOH 1_555 150.5 B HOH 129 J O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 132 J O HOH 1_555 73.3 B HOH 130 J O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 132 J O HOH 1_555 77.1 A HOH 131 I O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 133 J O HOH 1_555 66.0 A HOH 134 I O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 133 J O HOH 1_555 67.2 B HOH 129 J O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 133 J O HOH 1_555 71.4 B HOH 130 J O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 133 J O HOH 1_555 116.8 B HOH 132 J O HOH 1_555 B CA 25 G CA CA 1_555 B HOH 133 J O HOH 1_555 131.8 B DG 16 B OP1 DG 6 1_555 B CA 23 F CA CA 1_555 B HOH 121 J O HOH 1_555 105.7 B DG 16 B OP1 DG 6 1_555 B CA 23 F CA CA 1_555 B HOH 122 J O HOH 1_555 96.5 B HOH 121 J O HOH 1_555 B CA 23 F CA CA 1_555 B HOH 122 J O HOH 1_555 69.4 B DG 16 B OP1 DG 6 1_555 B CA 23 F CA CA 1_555 B HOH 123 J O HOH 1_555 93.5 B HOH 121 J O HOH 1_555 B CA 23 F CA CA 1_555 B HOH 123 J O HOH 1_555 142.9 B HOH 122 J O HOH 1_555 B CA 23 F CA CA 1_555 B HOH 123 J O HOH 1_555 77.2 B HOH 135 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 136 J O HOH 1_555 132.4 B HOH 135 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 137 J O HOH 1_555 83.5 B HOH 136 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 137 J O HOH 1_555 144.0 B HOH 135 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 138 J O HOH 1_555 130.1 B HOH 136 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 138 J O HOH 1_555 79.7 B HOH 137 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 138 J O HOH 1_555 76.4 B HOH 135 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 139 J O HOH 1_555 144.1 B HOH 136 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 139 J O HOH 1_555 74.0 B HOH 137 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 139 J O HOH 1_555 72.9 B HOH 138 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 139 J O HOH 1_555 70.3 B HOH 135 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 140 J O HOH 1_555 77.2 B HOH 136 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 140 J O HOH 1_555 84.5 B HOH 137 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 140 J O HOH 1_555 104.9 B HOH 138 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 140 J O HOH 1_555 152.0 B HOH 139 J O HOH 1_555 B CA 26 H CA CA 1_555 B HOH 140 J O HOH 1_555 83.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B B O O HOH HOH 61 107 1.87 1 4.19 0.30 108.30 112.49 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 7.04 1.10 110.50 117.54 A A A O3' P OP2 DC DT DT 1 2 2 Y 1 -4.51 0.60 127.20 122.69 A A A C2 N3 C4 DT DT DT 2 2 2 N 1 -5.10 0.60 119.90 114.80 A A A N3 C4 O4 DT DT DT 2 2 2 N 1 -5.12 0.80 109.40 104.28 A A A O5' C5' C4' DC DC DC 3 3 3 N 1 3.57 0.50 119.90 123.47 A A A C2 N3 C4 DC DC DC 3 3 3 N 1 -2.57 0.40 121.90 119.33 A A A N3 C4 C5 DC DC DC 3 3 3 N 1 4.42 0.60 118.90 123.32 A A A N1 C2 O2 DC DC DC 3 3 3 N 1 7.46 1.20 119.70 127.16 A A A C3' O3' P DC DC DT 3 3 4 Y 1 -9.51 1.50 119.60 110.09 A A A OP1 P OP2 DT DT DT 4 4 4 N 1 -6.71 0.80 109.40 102.69 A A A O5' C5' C4' DT DT DT 4 4 4 N 1 -6.89 0.70 108.00 101.11 A A A O4' C1' N1 DT DT DT 4 4 4 N 1 4.44 0.60 114.60 119.04 A A A N1 C2 N3 DT DT DT 4 4 4 N 1 -5.54 0.60 127.20 121.66 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 4.09 0.60 115.20 119.29 A A A N3 C4 C5 DT DT DT 4 4 4 N 1 11.72 1.20 119.70 131.42 A A A C3' O3' P DT DT DC 4 4 5 Y 1 -4.84 0.80 105.90 101.06 A A A O4' C1' C2' DC DC DC 5 5 5 N 1 4.50 0.60 118.90 123.40 A A A N1 C2 O2 DC DC DC 5 5 5 N 1 7.22 1.20 119.70 126.92 A A A C3' O3' P DC DC DG 5 5 6 Y 1 -5.35 0.80 109.40 104.05 A A A O5' C5' C4' DG DG DG 6 6 6 N 1 -5.33 0.80 102.40 97.07 A A A C3' C2' C1' DG DG DG 6 6 6 N 1 3.29 0.50 106.80 110.09 A A A O4' C1' C2' DG DG DG 6 6 6 N 1 -3.80 0.60 125.10 121.30 A A A C6 N1 C2 DG DG DG 6 6 6 N 1 3.43 0.50 111.50 114.93 A A A C5 C6 N1 DG DG DG 6 6 6 N 1 8.31 1.10 109.80 118.11 A A A C5' C4' O4' DA DA DA 7 7 7 N 1 4.63 0.60 118.60 123.23 A A A C6 N1 C2 DA DA DA 7 7 7 N 1 -3.92 0.50 117.70 113.78 A A A C5 C6 N1 DA DA DA 7 7 7 N 1 4.50 0.60 118.60 123.10 A A A N1 C6 N6 DA DA DA 7 7 7 N 1 7.42 1.10 110.50 117.92 A A A O3' P OP2 DA DG DG 7 8 8 Y 1 -5.14 0.80 109.40 104.26 A A A O5' C5' C4' DG DG DG 8 8 8 N 1 -11.90 1.60 120.90 109.00 A A A P O5' C5' DG DG DG 8 8 8 N 1 3.65 0.60 123.90 127.55 A A A N1 C2 N3 DG DG DG 8 8 8 N 1 -3.74 0.50 111.90 108.16 A A A C2 N3 C4 DG DG DG 8 8 8 N 1 -2.49 0.40 106.40 103.91 A A A C8 N9 C4 DG DG DG 8 8 8 N 1 -5.61 0.70 119.90 114.29 A A A N3 C2 N2 DG DG DG 8 8 8 N 1 5.55 0.30 108.30 113.85 A A A O4' C1' N9 DA DA DA 9 9 9 N 1 -3.85 0.50 129.30 125.45 A A A N1 C2 N3 DA DA DA 9 9 9 N 1 10.21 1.50 119.60 129.81 A A A OP1 P OP2 DG DG DG 10 10 10 N 1 -7.41 0.80 109.40 101.99 A A A O5' C5' C4' DG DG DG 10 10 10 N 1 6.71 0.30 108.30 115.01 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 -4.00 0.60 125.10 121.10 A A A C6 N1 C2 DG DG DG 10 10 10 N 1 3.55 0.50 111.50 115.05 A A A C5 C6 N1 DG DG DG 10 10 10 N 1 3.78 0.50 106.80 110.58 B B B O4' C1' C2' DC DC DC 11 11 11 N 1 3.13 0.30 108.30 111.43 B B B O4' C1' N1 DC DC DC 11 11 11 N 1 -5.12 0.80 109.40 104.28 B B B O5' C5' C4' DT DT DT 12 12 12 N 1 -4.40 0.60 127.20 122.80 B B B C2 N3 C4 DT DT DT 12 12 12 N 1 3.91 0.60 115.20 119.11 B B B N3 C4 C5 DT DT DT 12 12 12 N 1 -8.39 0.80 109.40 101.01 B B B O5' C5' C4' DC DC DC 13 13 13 N 1 3.67 0.30 108.30 111.97 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 3.38 0.50 119.90 123.28 B B B C2 N3 C4 DC DC DC 13 13 13 N 1 1.82 0.30 108.30 110.12 B B B O4' C1' N1 DT DT DT 14 14 14 N 1 3.93 0.60 114.60 118.53 B B B N1 C2 N3 DT DT DT 14 14 14 N 1 -6.94 0.80 123.10 116.16 B B B N1 C2 O2 DT DT DT 14 14 14 N 1 -4.55 0.70 124.90 120.35 B B B C5 C4 O4 DT DT DT 14 14 14 N 1 11.76 1.20 119.70 131.46 B B B C3' O3' P DT DT DC 14 14 15 Y 1 6.95 1.10 110.50 117.45 B B B O3' P OP2 DT DC DC 14 15 15 Y 1 -2.73 0.40 121.90 119.17 B B B N3 C4 C5 DC DC DC 15 15 15 N 1 7.28 1.10 110.50 117.78 B B B O3' P OP2 DC DG DG 15 16 16 Y 1 -6.37 0.80 109.40 103.03 B B B O5' C5' C4' DG DG DG 16 16 16 N 1 3.18 0.30 108.30 111.48 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 7.06 1.10 109.80 116.86 B B B C5' C4' O4' DA DA DA 17 17 17 N 1 5.02 0.60 118.60 123.62 B B B C6 N1 C2 DA DA DA 17 17 17 N 1 -4.72 0.50 129.30 124.58 B B B N1 C2 N3 DA DA DA 17 17 17 N 1 -3.44 0.50 117.70 114.26 B B B C5 C6 N1 DA DA DA 17 17 17 N 1 6.58 0.60 118.60 125.18 B B B N1 C6 N6 DA DA DA 17 17 17 N 1 -7.19 0.80 109.40 102.21 B B B O5' C5' C4' DG DG DG 18 18 18 N 1 5.63 0.30 108.30 113.93 B B B O4' C1' N9 DG DG DG 18 18 18 N 1 -5.27 0.80 102.40 97.13 B B B C3' C2' C1' DA DA DA 19 19 19 N 1 4.95 0.50 106.80 111.75 B B B O4' C1' C2' DA DA DA 19 19 19 N 1 -4.67 0.50 129.30 124.63 B B B N1 C2 N3 DA DA DA 19 19 19 N 1 4.60 0.50 110.60 115.20 B B B C2 N3 C4 DA DA DA 19 19 19 N 1 -6.67 0.80 109.40 102.73 B B B O5' C5' C4' DG DG DG 20 20 20 N 1 5.98 0.30 108.30 114.28 B B B O4' C1' N9 DG DG DG 20 20 20 N 1 A A O3' P DC DT 3 4 -0.087 0.012 1.607 1.520 Y 1 A A O4' C1' DT DT 4 4 0.115 0.011 1.420 1.535 N 1 A A O4' C4' DT DT 4 4 -0.079 0.010 1.446 1.367 N 1 A A P O5' DC DC 5 5 0.081 0.010 1.593 1.674 N 1 A A O4' C4' DA DA 7 7 -0.064 0.010 1.446 1.382 N 1 A A C5 N7 DA DA 9 9 0.037 0.006 1.388 1.425 N 1 B B C2' C1' DC DC 11 11 -0.066 0.010 1.518 1.452 N 1 B B N3 C4 DT DT 14 14 -0.067 0.008 1.382 1.315 N 1 B B O4' C4' DC DC 15 15 -0.063 0.010 1.446 1.383 N 1 B B C5' C4' DG DG 16 16 -0.069 0.011 1.509 1.440 N 1 B B O4' C4' DG DG 18 18 -0.090 0.010 1.446 1.356 N 1 B B C6 N1 DA DA 19 19 0.046 0.007 1.351 1.397 N 1 B B C5 N7 DA DA 19 19 -0.038 0.006 1.388 1.350 N 1 B B C8 N9 DA DA 19 19 -0.061 0.008 1.373 1.312 N 1 A A OP1 O DT HOH 4 87 1.91 1_555 1_545 1 B B O3' O DG HOH 20 80 2.03 1_555 4_545 1 B B C3' O DG HOH 20 80 2.07 1_555 4_545 1 B B C2' O DG HOH 20 80 2.08 1_555 4_545 0.2000000 1.700 8.000 4946 1 2.000 TR isotropic TR isotropic 1.700 8.000 82 524 38 404 0 3.632 6.000 4.141 6.000 4.587 6.000 5.106 6.000 0.021 0.025 0.036 0.035 0.037 0.025 0.045 0.035 0.021 0.020 0.166 0.150 0.087 0.100 0.103 0.100 fix fix 1.700 196D 4946 1 87.000 refinement NUCLSQ CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N metalc 2.416 A DC 5 A OP2 DC 5 1_555 A CA 22 D CA CA 1_555 metalc 2.435 A CA 21 C CA CA 1_555 A HOH 111 I O HOH 1_555 metalc 2.491 A CA 21 C CA CA 1_555 A HOH 112 I O HOH 1_555 metalc 2.481 A CA 21 C CA CA 1_555 A HOH 113 I O HOH 1_555 metalc 2.511 A CA 21 C CA CA 1_555 B HOH 109 J O HOH 1_555 metalc 2.471 A CA 21 C CA CA 1_555 B HOH 110 J O HOH 1_555 metalc 2.488 A CA 21 C CA CA 1_555 B HOH 114 J O HOH 1_555 metalc 2.436 A CA 21 C CA CA 1_555 B HOH 115 J O HOH 1_555 metalc 2.403 A CA 22 D CA CA 1_555 A HOH 116 I O HOH 1_555 metalc 2.404 A CA 22 D CA CA 1_555 A HOH 117 I O HOH 1_555 metalc 2.550 A CA 22 D CA CA 1_555 A HOH 118 I O HOH 1_555 metalc 2.454 A CA 22 D CA CA 1_555 A HOH 119 I O HOH 1_555 metalc 2.350 A CA 22 D CA CA 1_555 A HOH 120 I O HOH 1_555 metalc 2.537 A CA 24 E CA CA 1_555 A HOH 124 I O HOH 1_555 metalc 2.519 A CA 24 E CA CA 1_555 A HOH 126 I O HOH 1_555 metalc 2.354 A CA 24 E CA CA 1_555 A HOH 127 I O HOH 1_555 metalc 2.342 A CA 24 E CA CA 1_555 B HOH 125 J O HOH 1_555 metalc 2.364 A CA 24 E CA CA 1_555 B HOH 128 J O HOH 1_555 metalc 2.479 A HOH 131 I O HOH 1_555 B CA 25 G CA CA 1_555 metalc 2.416 A HOH 134 I O HOH 1_555 B CA 25 G CA CA 1_555 metalc 2.591 B DG 16 B OP1 DG 6 1_555 B CA 23 F CA CA 1_555 metalc 2.344 B CA 23 F CA CA 1_555 B HOH 121 J O HOH 1_555 metalc 2.396 B CA 23 F CA CA 1_555 B HOH 122 J O HOH 1_555 metalc 2.522 B CA 23 F CA CA 1_555 B HOH 123 J O HOH 1_555 metalc 2.395 B CA 25 G CA CA 1_555 B HOH 129 J O HOH 1_555 metalc 2.515 B CA 25 G CA CA 1_555 B HOH 130 J O HOH 1_555 metalc 2.431 B CA 25 G CA CA 1_555 B HOH 132 J O HOH 1_555 metalc 2.416 B CA 25 G CA CA 1_555 B HOH 133 J O HOH 1_555 metalc 2.523 B CA 26 H CA CA 1_555 B HOH 135 J O HOH 1_555 metalc 2.404 B CA 26 H CA CA 1_555 B HOH 136 J O HOH 1_555 metalc 2.488 B CA 26 H CA CA 1_555 B HOH 137 J O HOH 1_555 metalc 2.511 B CA 26 H CA CA 1_555 B HOH 138 J O HOH 1_555 metalc 2.538 B CA 26 H CA CA 1_555 B HOH 139 J O HOH 1_555 metalc 2.431 B CA 26 H CA CA 1_555 B HOH 140 J O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 20 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 20 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 20 B N2 DG 10 1_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 B DA 19 B N1 DA 9 1_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 B DA 19 B N6 DA 9 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 18 B N1 DG 8 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 18 B O6 DG 8 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 18 B N2 DG 8 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 17 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 17 B N6 DA 7 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 16 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 16 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 16 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 15 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 15 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 15 B N4 DC 5 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 14 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 14 B O4 DT 4 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 13 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 13 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 13 B N4 DC 3 1_555 hydrog WATSON-CRICK A DA 9 A N1 DA 9 1_555 B DT 12 B N3 DT 2 1_555 hydrog WATSON-CRICK A DA 9 A N6 DA 9 1_555 B DT 12 B O4 DT 2 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 11 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 11 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 11 B N4 DC 1 1_555 DNA B-DNA, DOUBLE HELIX, DNA 196D PDB 1 196D 1 10 196D 1 10 196D A 1 1 10 11 20 196D 11 20 196D B 1 1 10 BINDING SITE FOR RESIDUE CA A 21 A CA 21 Software 7 BINDING SITE FOR RESIDUE CA A 22 A CA 22 Software 7 BINDING SITE FOR RESIDUE CA B 23 B CA 23 Software 5 BINDING SITE FOR RESIDUE CA A 24 A CA 24 Software 5 BINDING SITE FOR RESIDUE CA B 25 B CA 25 Software 6 BINDING SITE FOR RESIDUE CA B 26 B CA 26 Software 6 A HOH 111 I HOH 7 1_555 A HOH 112 I HOH 7 1_555 A HOH 113 I HOH 7 1_555 B HOH 109 J HOH 7 1_555 B HOH 110 J HOH 7 1_555 B HOH 114 J HOH 7 1_555 B HOH 115 J HOH 7 1_555 A DC 5 A DC 5 7 1_555 A DG 8 A DG 8 7 1_545 A HOH 116 I HOH 7 1_555 A HOH 117 I HOH 7 1_555 A HOH 118 I HOH 7 1_555 A HOH 119 I HOH 7 1_555 A HOH 120 I HOH 7 1_555 A DC 3 A DC 3 5 1_565 B DG 16 B DG 6 5 1_555 B HOH 121 J HOH 5 1_555 B HOH 122 J HOH 5 1_555 B HOH 123 J HOH 5 1_555 A HOH 124 I HOH 5 1_555 A HOH 126 I HOH 5 1_555 A HOH 127 I HOH 5 1_555 B HOH 125 J HOH 5 1_555 B HOH 128 J HOH 5 1_555 A HOH 131 I HOH 6 1_555 A HOH 134 I HOH 6 1_555 B HOH 129 J HOH 6 1_555 B HOH 130 J HOH 6 1_555 B HOH 132 J HOH 6 1_555 B HOH 133 J HOH 6 1_555 B HOH 135 J HOH 6 1_555 B HOH 136 J HOH 6 1_555 B HOH 137 J HOH 6 1_555 B HOH 138 J HOH 6 1_555 B HOH 139 J HOH 6 1_555 B HOH 140 J HOH 6 1_555 5 C 1 2 1