0.018688
0.000000
0.000000
0.000000
0.014641
0.000000
0.000000
0.000000
0.009194
0.00000
0.00000
0.00000
Shimizu, T.
Toumoto, A.
Ihara, K.
Shimizu, M.
Kyogoku, Y.
Ogawa, N.
Oshima, Y.
Hakoshima, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
53.510
68.300
108.770
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
O
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
R
C
N
429
N
O
N
430
N
C
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
N
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
N
479
N
O
N
480
N
O
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
N
N
493
S
C
N
494
N
C
N
495
N
O
N
496
N
C
N
497
N
C
N
498
N
C
N
499
N
O
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
Y
443
N
doub
Y
444
N
sing
Y
445
N
sing
N
446
N
sing
Y
447
N
doub
Y
448
N
sing
Y
449
N
sing
N
450
N
sing
Y
451
N
sing
Y
452
N
doub
N
453
N
sing
Y
454
N
doub
N
455
N
sing
Y
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
Y
471
N
doub
Y
472
N
sing
Y
473
N
sing
N
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
doub
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
16
4689
4697
10.1093/emboj/16.15.4689
9303313
Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition.
1997
10.2210/pdb1a0a/pdb
pdb_00001a0a
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
288.00
1
DIFFRACTOMETER
1996-06
WEISSENBERG
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL-18B
Photon Factory
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-18B
5212.386
DNA (5'-D(*CP*TP*CP*AP*CP*AP*CP*GP*TP*GP*GP*GP*AP*CP*TP*AP*G )-3')
UPSTREAM ACTIVATION SITE P2
1
syn
polymer
5203.373
DNA (5'-D(*CP*TP*AP*GP*TP*CP*CP*CP*AP*CP*GP*TP*GP*TP*GP*AP*G )-3')
UPSTREAM ACTIVATION SITE P2
1
syn
polymer
7104.062
PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4)
DNA BINDING DOMAIN
2
man
polymer
18.015
water
80
nat
water
FRAGMENT UPSTREAM ACTIVATION SITE P2
FRAGMENT: UPSTREAM ACTIVATION SITE P2
FRAGMENT: DNA BINDING DOMAIN
UASP2(17)
UASP2(17)
BHLH
no
no
(DC)(DT)(DC)(DA)(DC)(DA)(DC)(DG)(DT)(DG)(DG)(DG)(DA)(DC)(DT)(DA)(DG)
CTCACACGTGGGACTAG
C
polydeoxyribonucleotide
no
no
(DC)(DT)(DA)(DG)(DT)(DC)(DC)(DC)(DA)(DC)(DG)(DT)(DG)(DT)(DG)(DA)(DG)
CTAGTCCCACGTGTGAG
D
polydeoxyribonucleotide
no
no
MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST
MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
Escherichia coli
sample
4932
Saccharomyces cerevisiae
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
3
4.20
71.0000
VAPOR DIFFUSION
3.6
VAPOR DIFFUSION METHOD: DROP-0.4MM PROTEIN, 0.2MM DNA, 1% PEG6K, 20MM NACITRATE (PH3.6), RESERVOIR-1% PEG6K, 20MM NACITRATE(PH3.6), vapor diffusion
PEG 6000
1
NA CITRATE
1
PEG 6000
2
NA CITRATE
2
22.992
1
19
C
1
D
17
0.642
C_DC1:DG17_D
1
0.407
0.244
-1.690
-0.520
8.118
1
20
C
2
D
16
-5.751
C_DT2:DA16_D
2
6.146
0.146
-0.845
-0.073
-0.013
1
19
C
3
D
15
-0.703
C_DC3:DG15_D
3
0.021
0.598
-0.003
-0.262
0.014
1
20
C
4
D
14
-10.728
C_DA4:DT14_D
4
-0.042
-0.170
-0.022
-0.276
-7.880
1
19
C
5
D
13
-0.262
C_DC5:DG13_D
5
-12.571
0.276
0.349
-0.237
9.451
1
20
C
6
D
12
11.096
C_DA6:DT12_D
6
0.762
-0.009
-0.002
-0.438
9.409
1
19
C
7
D
11
3.509
C_DC7:DG11_D
7
15.254
-0.084
-0.151
-0.082
-5.625
1
19
C
8
D
10
0.806
C_DG8:DC10_D
8
23.220
0.288
0.010
-0.252
-13.488
1
20
C
9
D
9
8.061
C_DT9:DA9_D
9
6.776
-0.215
0.377
-0.264
4.064
1
19
C
10
D
8
-0.945
C_DG10:DC8_D
10
1.266
-0.215
-0.266
0.315
14.093
1
19
C
11
D
7
0.364
C_DG11:DC7_D
11
6.558
-0.088
-0.036
-0.152
-0.024
1
19
C
12
D
6
-5.332
C_DG12:DC6_D
12
0.303
0.263
-0.017
-0.366
0.450
1
20
C
13
D
5
-11.020
C_DA13:DT5_D
13
1.477
0.224
-0.036
0.045
-0.318
1
19
C
14
D
4
0.894
C_DC14:DG4_D
14
0.531
-0.091
0.012
0.104
1.274
1
20
C
15
D
3
1.423
C_DT15:DA3_D
15
10.999
-0.105
0.271
0.070
-12.979
1
20
C
16
D
2
5.635
C_DA16:DT2_D
16
23.357
0.416
0.566
0.055
-14.894
1
19
C
17
D
1
1.092
C_DG17:DC1_D
17
4.512
-0.035
-0.320
-0.057
3.822
31.156
C
C
1
2
25.834
D
D
17
16
3.898
13.398
0.431
0.636
CC_DC1DT2:DA16DG17_DD
1
4.217
-8.131
27.881
-2.008
0.203
2.316
42.357
C
C
2
3
32.977
D
D
16
15
3.328
22.681
0.617
-1.033
CC_DT2DC3:DG15DA16_DD
2
0.285
-0.414
36.009
-3.609
-0.827
2.530
27.932
C
C
3
4
20.691
D
D
15
14
2.592
9.783
0.160
0.277
CC_DC3DA4:DT14DG15_DD
3
0.328
-0.693
26.193
-1.309
-0.269
4.893
31.412
C
C
4
5
-1.767
D
D
14
13
4.856
-0.956
0.165
-1.233
CC_DA4DC5:DG13DT14_DD
4
1.663
-3.073
31.355
-2.010
0.159
2.213
37.787
C
C
5
6
-4.384
D
D
13
12
2.446
-2.834
0.978
2.160
CC_DC5DA6:DT12DG13_DD
5
-2.587
4.001
37.599
3.596
-1.748
2.832
38.154
C
C
6
7
11.350
D
D
12
11
3.085
7.368
-0.986
-0.605
CC_DA6DC7:DG11DT12_DD
6
3.083
-4.749
37.339
-1.777
1.865
4.672
40.260
C
C
7
8
19.769
D
D
11
10
4.907
13.358
0.003
0.106
CC_DC7DG8:DC10DG11_DD
7
-2.790
4.128
37.967
-2.133
-0.482
3.328
32.313
C
C
8
9
-2.684
D
D
10
9
3.365
-1.492
0.734
-0.307
CC_DG8DT9:DA9DC10_DD
8
-1.893
3.405
32.225
-0.280
-1.662
2.260
26.643
C
C
9
10
-9.195
D
D
9
8
2.666
-4.175
-0.826
0.526
CC_DT9DG10:DC8DA9_DD
9
6.787
-14.949
25.444
1.984
3.161
2.186
31.528
C
C
10
11
20.502
D
D
8
7
2.837
10.916
1.882
-1.170
CC_DG10DG11:DC7DC8_DD
10
-1.440
2.704
29.588
-3.766
-3.676
3.671
36.513
C
C
11
12
33.775
D
D
7
6
3.474
20.025
-2.067
1.048
CC_DG11DG12:DC6DC7_DD
11
-3.518
5.933
30.490
-1.647
2.716
3.399
43.029
C
C
12
13
14.884
D
D
6
5
3.341
10.598
-1.784
-1.038
CC_DG12DA13:DT5DC6_DD
12
-14.986
21.047
39.086
-2.553
0.824
3.408
27.155
C
C
13
14
-1.630
D
D
5
4
3.448
-0.763
0.476
-1.732
CC_DA13DC14:DG4DT5_DD
13
-3.484
7.441
26.924
-3.488
-1.937
3.229
38.070
C
C
14
15
-24.892
D
D
4
3
3.386
-15.781
0.680
-0.306
CC_DC14DT15:DA3DG4_DD
14
0.351
-0.554
34.754
1.657
-0.995
3.173
38.959
C
C
15
16
20.864
D
D
3
2
3.451
13.631
-0.346
-0.265
CC_DT15DA16:DT2DA3_DD
15
-2.707
4.143
36.486
-2.129
0.176
3.609
33.377
C
C
16
17
-0.807
D
D
2
1
3.700
-0.459
-0.012
-1.532
CC_DA16DG17:DC1DT2_DD
16
8.235
-14.480
32.370
-2.581
1.571
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1998-03-18
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
BNL
Y
NDB
1997-11-27
REL
HOH
water
HOH
1
4
HOH
HOH
18
C
HOH
2
4
HOH
HOH
19
C
HOH
10
4
HOH
HOH
20
C
HOH
11
4
HOH
HOH
21
C
HOH
22
4
HOH
HOH
22
C
HOH
25
4
HOH
HOH
23
C
HOH
34
4
HOH
HOH
24
C
HOH
38
4
HOH
HOH
25
C
HOH
42
4
HOH
HOH
26
C
HOH
44
4
HOH
HOH
27
C
HOH
48
4
HOH
HOH
28
C
HOH
49
4
HOH
HOH
29
C
HOH
52
4
HOH
HOH
30
C
HOH
55
4
HOH
HOH
31
C
HOH
56
4
HOH
HOH
32
C
HOH
65
4
HOH
HOH
33
C
HOH
66
4
HOH
HOH
34
C
HOH
72
4
HOH
HOH
35
C
HOH
3
4
HOH
HOH
18
D
HOH
6
4
HOH
HOH
19
D
HOH
15
4
HOH
HOH
20
D
HOH
18
4
HOH
HOH
21
D
HOH
23
4
HOH
HOH
22
D
HOH
35
4
HOH
HOH
23
D
HOH
36
4
HOH
HOH
24
D
HOH
37
4
HOH
HOH
25
D
HOH
40
4
HOH
HOH
26
D
HOH
41
4
HOH
HOH
27
D
HOH
43
4
HOH
HOH
28
D
HOH
45
4
HOH
HOH
29
D
HOH
47
4
HOH
HOH
30
D
HOH
50
4
HOH
HOH
31
D
HOH
57
4
HOH
HOH
32
D
HOH
58
4
HOH
HOH
33
D
HOH
59
4
HOH
HOH
34
D
HOH
60
4
HOH
HOH
35
D
HOH
71
4
HOH
HOH
36
D
HOH
73
4
HOH
HOH
37
D
HOH
75
4
HOH
HOH
38
D
HOH
77
4
HOH
HOH
39
D
HOH
78
4
HOH
HOH
40
D
HOH
5
4
HOH
HOH
63
A
HOH
7
4
HOH
HOH
64
A
HOH
8
4
HOH
HOH
65
A
HOH
13
4
HOH
HOH
66
A
HOH
14
4
HOH
HOH
67
A
HOH
16
4
HOH
HOH
68
A
HOH
17
4
HOH
HOH
69
A
HOH
19
4
HOH
HOH
70
A
HOH
20
4
HOH
HOH
71
A
HOH
21
4
HOH
HOH
72
A
HOH
26
4
HOH
HOH
73
A
HOH
28
4
HOH
HOH
74
A
HOH
32
4
HOH
HOH
75
A
HOH
33
4
HOH
HOH
76
A
HOH
39
4
HOH
HOH
77
A
HOH
51
4
HOH
HOH
78
A
HOH
61
4
HOH
HOH
79
A
HOH
67
4
HOH
HOH
80
A
HOH
68
4
HOH
HOH
81
A
HOH
70
4
HOH
HOH
82
A
HOH
74
4
HOH
HOH
83
A
HOH
79
4
HOH
HOH
84
A
HOH
80
4
HOH
HOH
85
A
HOH
4
4
HOH
HOH
63
B
HOH
9
4
HOH
HOH
64
B
HOH
12
4
HOH
HOH
65
B
HOH
24
4
HOH
HOH
66
B
HOH
27
4
HOH
HOH
67
B
HOH
29
4
HOH
HOH
68
B
HOH
30
4
HOH
HOH
69
B
HOH
31
4
HOH
HOH
70
B
HOH
46
4
HOH
HOH
71
B
HOH
53
4
HOH
HOH
72
B
HOH
54
4
HOH
HOH
73
B
HOH
62
4
HOH
HOH
74
B
HOH
63
4
HOH
HOH
75
B
HOH
64
4
HOH
HOH
76
B
HOH
69
4
HOH
HOH
77
B
HOH
76
4
HOH
HOH
78
B
C
1
n
1
DC
1
C
T
2
n
2
DT
2
C
C
3
n
3
DC
3
C
A
4
n
4
DA
4
C
C
5
n
5
DC
5
C
A
6
n
6
DA
6
C
C
7
n
7
DC
7
C
G
8
n
8
DG
8
C
T
9
n
9
DT
9
C
G
10
n
10
DG
10
C
G
11
n
11
DG
11
C
G
12
n
12
DG
12
C
A
13
n
13
DA
13
C
C
14
n
14
DC
14
C
T
15
n
15
DT
15
C
A
16
n
16
DA
16
C
G
17
n
17
DG
17
C
C
1
n
1
DC
1
D
T
2
n
2
DT
2
D
A
3
n
3
DA
3
D
G
4
n
4
DG
4
D
T
5
n
5
DT
5
D
C
6
n
6
DC
6
D
C
7
n
7
DC
7
D
C
8
n
8
DC
8
D
A
9
n
9
DA
9
D
C
10
n
10
DC
10
D
G
11
n
11
DG
11
D
T
12
n
12
DT
12
D
G
13
n
13
DG
13
D
T
14
n
14
DT
14
D
G
15
n
15
DG
15
D
A
16
n
16
DA
16
D
G
17
n
17
DG
17
D
MET
0
n
1
MET
0
A
LYS
1
n
2
LYS
1
A
ARG
2
n
3
ARG
2
A
GLU
3
n
4
GLU
3
A
SER
4
n
5
SER
4
A
HIS
5
n
6
HIS
5
A
LYS
6
n
7
LYS
6
A
HIS
7
n
8
HIS
7
A
ALA
8
n
9
ALA
8
A
GLU
9
n
10
GLU
9
A
GLN
10
n
11
GLN
10
A
ALA
11
n
12
ALA
11
A
ARG
12
n
13
ARG
12
A
ARG
13
n
14
ARG
13
A
ASN
14
n
15
ASN
14
A
ARG
15
n
16
ARG
15
A
LEU
16
n
17
LEU
16
A
ALA
17
n
18
ALA
17
A
VAL
18
n
19
VAL
18
A
ALA
19
n
20
ALA
19
A
LEU
20
n
21
LEU
20
A
HIS
21
n
22
HIS
21
A
GLU
22
n
23
GLU
22
A
LEU
23
n
24
LEU
23
A
ALA
24
n
25
ALA
24
A
SER
25
n
26
SER
25
A
LEU
26
n
27
LEU
26
A
ILE
27
n
28
ILE
27
A
PRO
28
n
29
PRO
28
A
ALA
29
n
30
ALA
29
A
GLU
30
n
31
GLU
30
A
TRP
31
n
32
TRP
31
A
LYS
32
n
33
LYS
32
A
GLN
33
n
34
GLN
33
A
GLN
34
n
35
GLN
34
A
ASN
35
n
36
ASN
35
A
VAL
36
n
37
VAL
36
A
SER
37
n
38
SER
37
A
ALA
38
n
39
ALA
38
A
ALA
39
n
40
ALA
39
A
PRO
40
n
41
PRO
40
A
SER
41
n
42
SER
41
A
LYS
42
n
43
LYS
42
A
ALA
43
n
44
ALA
43
A
THR
44
n
45
THR
44
A
THR
45
n
46
THR
45
A
VAL
46
n
47
VAL
46
A
GLU
47
n
48
GLU
47
A
ALA
48
n
49
ALA
48
A
ALA
49
n
50
ALA
49
A
CYS
50
n
51
CYS
50
A
ARG
51
n
52
ARG
51
A
TYR
52
n
53
TYR
52
A
ILE
53
n
54
ILE
53
A
ARG
54
n
55
ARG
54
A
HIS
55
n
56
HIS
55
A
LEU
56
n
57
LEU
56
A
GLN
57
n
58
GLN
57
A
GLN
58
n
59
GLN
58
A
ASN
59
n
60
ASN
59
A
GLY
60
n
61
GLY
60
A
SER
61
n
62
SER
61
A
THR
62
n
63
THR
62
A
MET
0
n
1
MET
0
B
LYS
1
n
2
LYS
1
B
ARG
2
n
3
ARG
2
B
GLU
3
n
4
GLU
3
B
SER
4
n
5
SER
4
B
HIS
5
n
6
HIS
5
B
LYS
6
n
7
LYS
6
B
HIS
7
n
8
HIS
7
B
ALA
8
n
9
ALA
8
B
GLU
9
n
10
GLU
9
B
GLN
10
n
11
GLN
10
B
ALA
11
n
12
ALA
11
B
ARG
12
n
13
ARG
12
B
ARG
13
n
14
ARG
13
B
ASN
14
n
15
ASN
14
B
ARG
15
n
16
ARG
15
B
LEU
16
n
17
LEU
16
B
ALA
17
n
18
ALA
17
B
VAL
18
n
19
VAL
18
B
ALA
19
n
20
ALA
19
B
LEU
20
n
21
LEU
20
B
HIS
21
n
22
HIS
21
B
GLU
22
n
23
GLU
22
B
LEU
23
n
24
LEU
23
B
ALA
24
n
25
ALA
24
B
SER
25
n
26
SER
25
B
LEU
26
n
27
LEU
26
B
ILE
27
n
28
ILE
27
B
PRO
28
n
29
PRO
28
B
ALA
29
n
30
ALA
29
B
GLU
30
n
31
GLU
30
B
TRP
31
n
32
TRP
31
B
LYS
32
n
33
LYS
32
B
GLN
33
n
34
GLN
33
B
GLN
34
n
35
GLN
34
B
ASN
35
n
36
ASN
35
B
VAL
36
n
37
VAL
36
B
SER
37
n
38
SER
37
B
ALA
38
n
39
ALA
38
B
ALA
39
n
40
ALA
39
B
PRO
40
n
41
PRO
40
B
SER
41
n
42
SER
41
B
LYS
42
n
43
LYS
42
B
ALA
43
n
44
ALA
43
B
THR
44
n
45
THR
44
B
THR
45
n
46
THR
45
B
VAL
46
n
47
VAL
46
B
GLU
47
n
48
GLU
47
B
ALA
48
n
49
ALA
48
B
ALA
49
n
50
ALA
49
B
CYS
50
n
51
CYS
50
B
ARG
51
n
52
ARG
51
B
TYR
52
n
53
TYR
52
B
ILE
53
n
54
ILE
53
B
ARG
54
n
55
ARG
54
B
HIS
55
n
56
HIS
55
B
LEU
56
n
57
LEU
56
B
GLN
57
n
58
GLN
57
B
GLN
58
n
59
GLN
58
B
ASN
59
n
60
ASN
59
B
GLY
60
n
61
GLY
60
B
SER
61
n
62
SER
61
B
THR
62
n
63
THR
62
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-6.02
0.80
102.40
96.38
C
C
C
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
1
-16.99
1.90
112.60
95.61
D
D
D
N9
C1'
C2'
DG
DG
DG
4
4
4
N
1
3.02
0.30
108.30
111.32
D
D
D
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
-19.07
1.90
112.60
93.53
D
D
D
N1
C1'
C2'
DT
DT
DT
5
5
5
N
1
2.41
0.30
108.30
110.71
D
D
D
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
A
LYS
1
-71.23
25.90
1
A
ARG
2
-60.57
31.12
1
A
GLU
3
-164.97
-54.69
1
A
LYS
6
7.81
-78.17
1
A
GLU
9
-73.15
-80.42
1
A
LYS
32
-17.07
-34.58
1
A
ALA
39
150.62
150.94
1
A
LYS
42
-76.79
41.90
1
A
ALA
43
-169.31
-53.53
1
A
HIS
55
-71.63
-72.09
1
A
LEU
56
-29.48
-30.43
1
A
GLN
57
-52.93
-77.21
1
B
LYS
1
-51.56
10.47
1
B
HIS
5
-38.77
-25.15
1
B
LYS
6
-78.05
-74.16
1
B
HIS
7
-39.80
-34.75
1
B
ALA
8
-80.25
-73.47
1
B
GLU
9
-55.07
9.39
1
B
LEU
16
-46.55
-19.47
1
B
ALA
17
-93.87
-64.82
1
B
ALA
19
-64.19
-71.36
1
B
LEU
20
-39.50
-35.70
1
B
GLU
22
-67.44
20.96
1
B
LEU
23
-103.33
-68.91
1
B
SER
25
-39.71
-26.98
1
B
LEU
26
-154.05
31.89
1
B
ALA
29
-60.32
88.93
1
B
ASN
35
-175.00
-178.70
1
B
VAL
36
-33.06
-17.82
1
B
SER
37
-20.18
98.16
1
B
ALA
39
172.13
120.19
1
B
SER
41
-169.62
-60.68
1
B
LYS
42
-125.77
-122.08
1
B
ALA
43
-1.51
-73.61
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM_NDBX.DNAE
TOP_NDBX.DNA
28.40
-0.560
0.0000
0.0000
3.9000
0.0000
-3.340
0.2840000
0.2300000
2.800
8.000
948
7581
12.500
77.300
RANDOM
1000000.000
0.0010
1
THROUGHOUT
3.000
MIR
2.800
8.000
80
1767
0
691
996
0.011
2.42
23.9
1.78
0.3190000
0.2570000
2.92
86
569
8
13.10
54.90
26.20
2.800
1A0A
9398
1.000
0.0870000
1
4.2000
3.900
92.000
0.2020000
2.800
2.950
3.500
1.900
80.40
phasing
MLPHARE
refinement
X-PLOR
3.1
data reduction
WEIS
data scaling
CCP4
(SCALA)
PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
GLU
3
C
GLU
4
HELX_P
A
ALA
8
C
ALA
9
5
H1A
6
A
GLU
9
C
GLU
10
HELX_P
A
LEU
26
C
LEU
27
1
H11
18
A
PRO
28
C
PRO
29
HELX_P
A
GLN
33
C
GLN
34
1
HA
6
A
ALA
43
C
ALA
44
HELX_P
A
GLN
57
C
GLN
58
1
H2A
15
B
LYS
1
D
LYS
2
HELX_P
B
LEU
26
D
LEU
27
5
H1B
26
B
ALA
29
D
ALA
30
HELX_P
B
GLN
33
D
GLN
34
5
HB
5
B
LYS
42
D
LYS
43
HELX_P
B
GLN
57
D
GLN
58
1
H2B
16
hydrog
WATSON-CRICK
C
DC
1
A
N3
DC
1
1_555
D
DG
17
B
N1
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
1
A
N4
DC
1
1_555
D
DG
17
B
O6
DG
17
1_555
hydrog
WATSON-CRICK
C
DC
1
A
O2
DC
1
1_555
D
DG
17
B
N2
DG
17
1_555
hydrog
WATSON-CRICK
C
DT
2
A
N3
DT
2
1_555
D
DA
16
B
N1
DA
16
1_555
hydrog
WATSON-CRICK
C
DT
2
A
O4
DT
2
1_555
D
DA
16
B
N6
DA
16
1_555
hydrog
WATSON-CRICK
C
DC
3
A
N3
DC
3
1_555
D
DG
15
B
N1
DG
15
1_555
hydrog
WATSON-CRICK
C
DC
3
A
N4
DC
3
1_555
D
DG
15
B
O6
DG
15
1_555
hydrog
WATSON-CRICK
C
DC
3
A
O2
DC
3
1_555
D
DG
15
B
N2
DG
15
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N1
DA
4
1_555
D
DT
14
B
N3
DT
14
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N6
DA
4
1_555
D
DT
14
B
O4
DT
14
1_555
hydrog
DC-DT MISPAIR
C
DC
5
A
N4
DC
5
1_555
D
DT
12
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
C
DC
5
A
N3
DC
5
1_555
D
DG
13
B
N1
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
5
A
N4
DC
5
1_555
D
DG
13
B
O6
DG
13
1_555
hydrog
WATSON-CRICK
C
DC
5
A
O2
DC
5
1_555
D
DG
13
B
N2
DG
13
1_555
hydrog
WATSON-CRICK
C
DA
6
A
N1
DA
6
1_555
D
DT
12
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
C
DA
6
A
N6
DA
6
1_555
D
DT
12
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
C
DC
7
A
N3
DC
7
1_555
D
DG
11
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
7
A
N4
DC
7
1_555
D
DG
11
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
7
A
O2
DC
7
1_555
D
DG
11
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
C
DG
8
A
N1
DG
8
1_555
D
DC
10
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
C
DG
8
A
N2
DG
8
1_555
D
DC
10
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
C
DG
8
A
O6
DG
8
1_555
D
DC
10
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
C
DT
9
A
N3
DT
9
1_555
D
DA
9
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
C
DT
9
A
O4
DT
9
1_555
D
DA
9
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
C
DG
10
A
N1
DG
10
1_555
D
DC
8
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
10
A
N2
DG
10
1_555
D
DC
8
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
10
A
O6
DG
10
1_555
D
DC
8
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
C
DG
11
A
N1
DG
11
1_555
D
DC
7
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
11
A
N2
DG
11
1_555
D
DC
7
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
11
A
O6
DG
11
1_555
D
DC
7
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
12
A
N1
DG
12
1_555
D
DC
6
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
12
A
N2
DG
12
1_555
D
DC
6
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
12
A
O6
DG
12
1_555
D
DC
6
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DA
13
A
N1
DA
13
1_555
D
DT
5
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
C
DA
13
A
N6
DA
13
1_555
D
DT
5
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N3
DC
14
1_555
D
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
14
A
N4
DC
14
1_555
D
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
14
A
O2
DC
14
1_555
D
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DT
15
A
N3
DT
15
1_555
D
DA
3
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
C
DT
15
A
O4
DT
15
1_555
D
DA
3
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
C
DA
16
A
N1
DA
16
1_555
D
DT
2
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
C
DA
16
A
N6
DA
16
1_555
D
DT
2
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
C
DG
17
A
N1
DG
17
1_555
D
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
17
A
N2
DG
17
1_555
D
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
17
A
O6
DG
17
1_555
D
DC
1
B
N4
DC
1
1_555
TRANSCRIPTION/DNA
TRANSCRIPTION FACTOR, BASIC HELIX LOOP HELIX, COMPLEX (TRANSCRIPTION FACTOR-DNA), TRANSCRIPTION-DNA COMPLEX
PHO4_YEAST
UNP
3
P07270
1A0A
PDB
1
1A0A
1A0A
PDB
2
1A0A
250
312
1A0A
0
62
P07270
A
1
1
63
250
312
1A0A
0
62
P07270
B
1
1
63
1
17
1A0A
1
17
1A0A
C
2
1
17
1
17
1A0A
1
17
1A0A
D
3
1
17
1
ASP
conflict
MET
0
1A0A
A
P07270
UNP
250
1
1
PRO
conflict
ALA
19
1A0A
A
P07270
UNP
269
20
2
ASP
conflict
MET
0
1A0A
B
P07270
UNP
250
1
2
PRO
conflict
ALA
19
1A0A
B
P07270
UNP
269
20
19
P 21 21 21