0.018688 0.000000 0.000000 0.000000 0.014641 0.000000 0.000000 0.000000 0.009194 0.00000 0.00000 0.00000 Shimizu, T. Toumoto, A. Ihara, K. Shimizu, M. Kyogoku, Y. Ogawa, N. Oshima, Y. Hakoshima, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 53.510 68.300 108.770 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N C N 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 N C N 415 N O N 416 N O N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 R C N 429 N O N 430 N C N 431 N O N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N N N 442 S C N 443 N C N 444 N O N 445 N C Y 446 N C Y 447 N C Y 448 N C Y 449 N N Y 450 N C Y 451 N C Y 452 N C Y 453 N C Y 454 N C N 455 N O N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N N N 469 S C N 470 N C N 471 N O N 472 N C Y 473 N C Y 474 N C Y 475 N C Y 476 N C Y 477 N C Y 478 N C N 479 N O N 480 N O N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N N N 493 S C N 494 N C N 495 N O N 496 N C N 497 N C N 498 N C N 499 N O N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing Y 443 N doub Y 444 N sing Y 445 N sing N 446 N sing Y 447 N doub Y 448 N sing Y 449 N sing N 450 N sing Y 451 N sing Y 452 N doub N 453 N sing Y 454 N doub N 455 N sing Y 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N doub N 467 N sing N 468 N sing N 469 N sing N 470 N sing Y 471 N doub Y 472 N sing Y 473 N sing N 474 N sing Y 475 N doub N 476 N sing Y 477 N doub N 478 N sing Y 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N doub N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing UK EMBO J. EMJODG 0897 0261-4189 16 4689 4697 10.1093/emboj/16.15.4689 9303313 Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition. 1997 10.2210/pdb1a0a/pdb pdb_00001a0a 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 288.00 1 DIFFRACTOMETER 1996-06 WEISSENBERG SINGLE WAVELENGTH M x-ray 1 1.0 BL-18B Photon Factory SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 5212.386 DNA (5'-D(*CP*TP*CP*AP*CP*AP*CP*GP*TP*GP*GP*GP*AP*CP*TP*AP*G )-3') UPSTREAM ACTIVATION SITE P2 1 syn polymer 5203.373 DNA (5'-D(*CP*TP*AP*GP*TP*CP*CP*CP*AP*CP*GP*TP*GP*TP*GP*AP*G )-3') UPSTREAM ACTIVATION SITE P2 1 syn polymer 7104.062 PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4) DNA BINDING DOMAIN 2 man polymer 18.015 water 80 nat water FRAGMENT UPSTREAM ACTIVATION SITE P2 FRAGMENT: UPSTREAM ACTIVATION SITE P2 FRAGMENT: DNA BINDING DOMAIN UASP2(17) UASP2(17) BHLH no no (DC)(DT)(DC)(DA)(DC)(DA)(DC)(DG)(DT)(DG)(DG)(DG)(DA)(DC)(DT)(DA)(DG) CTCACACGTGGGACTAG C polydeoxyribonucleotide no no (DC)(DT)(DA)(DG)(DT)(DC)(DC)(DC)(DA)(DC)(DG)(DT)(DG)(DT)(DG)(DA)(DG) CTAGTCCCACGTGTGAG D polydeoxyribonucleotide no no MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia Escherichia coli sample 4932 Saccharomyces cerevisiae 469008 Escherichia coli BL21(DE3) BL21 (DE3) 3 4.20 71.0000 VAPOR DIFFUSION 3.6 VAPOR DIFFUSION METHOD: DROP-0.4MM PROTEIN, 0.2MM DNA, 1% PEG6K, 20MM NACITRATE (PH3.6), RESERVOIR-1% PEG6K, 20MM NACITRATE(PH3.6), vapor diffusion PEG 6000 1 NA CITRATE 1 PEG 6000 2 NA CITRATE 2 22.992 1 19 C 1 D 17 0.642 C_DC1:DG17_D 1 0.407 0.244 -1.690 -0.520 8.118 1 20 C 2 D 16 -5.751 C_DT2:DA16_D 2 6.146 0.146 -0.845 -0.073 -0.013 1 19 C 3 D 15 -0.703 C_DC3:DG15_D 3 0.021 0.598 -0.003 -0.262 0.014 1 20 C 4 D 14 -10.728 C_DA4:DT14_D 4 -0.042 -0.170 -0.022 -0.276 -7.880 1 19 C 5 D 13 -0.262 C_DC5:DG13_D 5 -12.571 0.276 0.349 -0.237 9.451 1 20 C 6 D 12 11.096 C_DA6:DT12_D 6 0.762 -0.009 -0.002 -0.438 9.409 1 19 C 7 D 11 3.509 C_DC7:DG11_D 7 15.254 -0.084 -0.151 -0.082 -5.625 1 19 C 8 D 10 0.806 C_DG8:DC10_D 8 23.220 0.288 0.010 -0.252 -13.488 1 20 C 9 D 9 8.061 C_DT9:DA9_D 9 6.776 -0.215 0.377 -0.264 4.064 1 19 C 10 D 8 -0.945 C_DG10:DC8_D 10 1.266 -0.215 -0.266 0.315 14.093 1 19 C 11 D 7 0.364 C_DG11:DC7_D 11 6.558 -0.088 -0.036 -0.152 -0.024 1 19 C 12 D 6 -5.332 C_DG12:DC6_D 12 0.303 0.263 -0.017 -0.366 0.450 1 20 C 13 D 5 -11.020 C_DA13:DT5_D 13 1.477 0.224 -0.036 0.045 -0.318 1 19 C 14 D 4 0.894 C_DC14:DG4_D 14 0.531 -0.091 0.012 0.104 1.274 1 20 C 15 D 3 1.423 C_DT15:DA3_D 15 10.999 -0.105 0.271 0.070 -12.979 1 20 C 16 D 2 5.635 C_DA16:DT2_D 16 23.357 0.416 0.566 0.055 -14.894 1 19 C 17 D 1 1.092 C_DG17:DC1_D 17 4.512 -0.035 -0.320 -0.057 3.822 31.156 C C 1 2 25.834 D D 17 16 3.898 13.398 0.431 0.636 CC_DC1DT2:DA16DG17_DD 1 4.217 -8.131 27.881 -2.008 0.203 2.316 42.357 C C 2 3 32.977 D D 16 15 3.328 22.681 0.617 -1.033 CC_DT2DC3:DG15DA16_DD 2 0.285 -0.414 36.009 -3.609 -0.827 2.530 27.932 C C 3 4 20.691 D D 15 14 2.592 9.783 0.160 0.277 CC_DC3DA4:DT14DG15_DD 3 0.328 -0.693 26.193 -1.309 -0.269 4.893 31.412 C C 4 5 -1.767 D D 14 13 4.856 -0.956 0.165 -1.233 CC_DA4DC5:DG13DT14_DD 4 1.663 -3.073 31.355 -2.010 0.159 2.213 37.787 C C 5 6 -4.384 D D 13 12 2.446 -2.834 0.978 2.160 CC_DC5DA6:DT12DG13_DD 5 -2.587 4.001 37.599 3.596 -1.748 2.832 38.154 C C 6 7 11.350 D D 12 11 3.085 7.368 -0.986 -0.605 CC_DA6DC7:DG11DT12_DD 6 3.083 -4.749 37.339 -1.777 1.865 4.672 40.260 C C 7 8 19.769 D D 11 10 4.907 13.358 0.003 0.106 CC_DC7DG8:DC10DG11_DD 7 -2.790 4.128 37.967 -2.133 -0.482 3.328 32.313 C C 8 9 -2.684 D D 10 9 3.365 -1.492 0.734 -0.307 CC_DG8DT9:DA9DC10_DD 8 -1.893 3.405 32.225 -0.280 -1.662 2.260 26.643 C C 9 10 -9.195 D D 9 8 2.666 -4.175 -0.826 0.526 CC_DT9DG10:DC8DA9_DD 9 6.787 -14.949 25.444 1.984 3.161 2.186 31.528 C C 10 11 20.502 D D 8 7 2.837 10.916 1.882 -1.170 CC_DG10DG11:DC7DC8_DD 10 -1.440 2.704 29.588 -3.766 -3.676 3.671 36.513 C C 11 12 33.775 D D 7 6 3.474 20.025 -2.067 1.048 CC_DG11DG12:DC6DC7_DD 11 -3.518 5.933 30.490 -1.647 2.716 3.399 43.029 C C 12 13 14.884 D D 6 5 3.341 10.598 -1.784 -1.038 CC_DG12DA13:DT5DC6_DD 12 -14.986 21.047 39.086 -2.553 0.824 3.408 27.155 C C 13 14 -1.630 D D 5 4 3.448 -0.763 0.476 -1.732 CC_DA13DC14:DG4DT5_DD 13 -3.484 7.441 26.924 -3.488 -1.937 3.229 38.070 C C 14 15 -24.892 D D 4 3 3.386 -15.781 0.680 -0.306 CC_DC14DT15:DA3DG4_DD 14 0.351 -0.554 34.754 1.657 -0.995 3.173 38.959 C C 15 16 20.864 D D 3 2 3.451 13.631 -0.346 -0.265 CC_DT15DA16:DT2DA3_DD 15 -2.707 4.143 36.486 -2.129 0.176 3.609 33.377 C C 16 17 -0.807 D D 2 1 3.700 -0.459 -0.012 -1.532 CC_DA16DG17:DC1DT2_DD 16 8.235 -14.480 32.370 -2.581 1.571 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1998-03-18 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details BNL Y NDB 1997-11-27 REL HOH water HOH 1 4 HOH HOH 18 C HOH 2 4 HOH HOH 19 C HOH 10 4 HOH HOH 20 C HOH 11 4 HOH HOH 21 C HOH 22 4 HOH HOH 22 C HOH 25 4 HOH HOH 23 C HOH 34 4 HOH HOH 24 C HOH 38 4 HOH HOH 25 C HOH 42 4 HOH HOH 26 C HOH 44 4 HOH HOH 27 C HOH 48 4 HOH HOH 28 C HOH 49 4 HOH HOH 29 C HOH 52 4 HOH HOH 30 C HOH 55 4 HOH HOH 31 C HOH 56 4 HOH HOH 32 C HOH 65 4 HOH HOH 33 C HOH 66 4 HOH HOH 34 C HOH 72 4 HOH HOH 35 C HOH 3 4 HOH HOH 18 D HOH 6 4 HOH HOH 19 D HOH 15 4 HOH HOH 20 D HOH 18 4 HOH HOH 21 D HOH 23 4 HOH HOH 22 D HOH 35 4 HOH HOH 23 D HOH 36 4 HOH HOH 24 D HOH 37 4 HOH HOH 25 D HOH 40 4 HOH HOH 26 D HOH 41 4 HOH HOH 27 D HOH 43 4 HOH HOH 28 D HOH 45 4 HOH HOH 29 D HOH 47 4 HOH HOH 30 D HOH 50 4 HOH HOH 31 D HOH 57 4 HOH HOH 32 D HOH 58 4 HOH HOH 33 D HOH 59 4 HOH HOH 34 D HOH 60 4 HOH HOH 35 D HOH 71 4 HOH HOH 36 D HOH 73 4 HOH HOH 37 D HOH 75 4 HOH HOH 38 D HOH 77 4 HOH HOH 39 D HOH 78 4 HOH HOH 40 D HOH 5 4 HOH HOH 63 A HOH 7 4 HOH HOH 64 A HOH 8 4 HOH HOH 65 A HOH 13 4 HOH HOH 66 A HOH 14 4 HOH HOH 67 A HOH 16 4 HOH HOH 68 A HOH 17 4 HOH HOH 69 A HOH 19 4 HOH HOH 70 A HOH 20 4 HOH HOH 71 A HOH 21 4 HOH HOH 72 A HOH 26 4 HOH HOH 73 A HOH 28 4 HOH HOH 74 A HOH 32 4 HOH HOH 75 A HOH 33 4 HOH HOH 76 A HOH 39 4 HOH HOH 77 A HOH 51 4 HOH HOH 78 A HOH 61 4 HOH HOH 79 A HOH 67 4 HOH HOH 80 A HOH 68 4 HOH HOH 81 A HOH 70 4 HOH HOH 82 A HOH 74 4 HOH HOH 83 A HOH 79 4 HOH HOH 84 A HOH 80 4 HOH HOH 85 A HOH 4 4 HOH HOH 63 B HOH 9 4 HOH HOH 64 B HOH 12 4 HOH HOH 65 B HOH 24 4 HOH HOH 66 B HOH 27 4 HOH HOH 67 B HOH 29 4 HOH HOH 68 B HOH 30 4 HOH HOH 69 B HOH 31 4 HOH HOH 70 B HOH 46 4 HOH HOH 71 B HOH 53 4 HOH HOH 72 B HOH 54 4 HOH HOH 73 B HOH 62 4 HOH HOH 74 B HOH 63 4 HOH HOH 75 B HOH 64 4 HOH HOH 76 B HOH 69 4 HOH HOH 77 B HOH 76 4 HOH HOH 78 B C 1 n 1 DC 1 C T 2 n 2 DT 2 C C 3 n 3 DC 3 C A 4 n 4 DA 4 C C 5 n 5 DC 5 C A 6 n 6 DA 6 C C 7 n 7 DC 7 C G 8 n 8 DG 8 C T 9 n 9 DT 9 C G 10 n 10 DG 10 C G 11 n 11 DG 11 C G 12 n 12 DG 12 C A 13 n 13 DA 13 C C 14 n 14 DC 14 C T 15 n 15 DT 15 C A 16 n 16 DA 16 C G 17 n 17 DG 17 C C 1 n 1 DC 1 D T 2 n 2 DT 2 D A 3 n 3 DA 3 D G 4 n 4 DG 4 D T 5 n 5 DT 5 D C 6 n 6 DC 6 D C 7 n 7 DC 7 D C 8 n 8 DC 8 D A 9 n 9 DA 9 D C 10 n 10 DC 10 D G 11 n 11 DG 11 D T 12 n 12 DT 12 D G 13 n 13 DG 13 D T 14 n 14 DT 14 D G 15 n 15 DG 15 D A 16 n 16 DA 16 D G 17 n 17 DG 17 D MET 0 n 1 MET 0 A LYS 1 n 2 LYS 1 A ARG 2 n 3 ARG 2 A GLU 3 n 4 GLU 3 A SER 4 n 5 SER 4 A HIS 5 n 6 HIS 5 A LYS 6 n 7 LYS 6 A HIS 7 n 8 HIS 7 A ALA 8 n 9 ALA 8 A GLU 9 n 10 GLU 9 A GLN 10 n 11 GLN 10 A ALA 11 n 12 ALA 11 A ARG 12 n 13 ARG 12 A ARG 13 n 14 ARG 13 A ASN 14 n 15 ASN 14 A ARG 15 n 16 ARG 15 A LEU 16 n 17 LEU 16 A ALA 17 n 18 ALA 17 A VAL 18 n 19 VAL 18 A ALA 19 n 20 ALA 19 A LEU 20 n 21 LEU 20 A HIS 21 n 22 HIS 21 A GLU 22 n 23 GLU 22 A LEU 23 n 24 LEU 23 A ALA 24 n 25 ALA 24 A SER 25 n 26 SER 25 A LEU 26 n 27 LEU 26 A ILE 27 n 28 ILE 27 A PRO 28 n 29 PRO 28 A ALA 29 n 30 ALA 29 A GLU 30 n 31 GLU 30 A TRP 31 n 32 TRP 31 A LYS 32 n 33 LYS 32 A GLN 33 n 34 GLN 33 A GLN 34 n 35 GLN 34 A ASN 35 n 36 ASN 35 A VAL 36 n 37 VAL 36 A SER 37 n 38 SER 37 A ALA 38 n 39 ALA 38 A ALA 39 n 40 ALA 39 A PRO 40 n 41 PRO 40 A SER 41 n 42 SER 41 A LYS 42 n 43 LYS 42 A ALA 43 n 44 ALA 43 A THR 44 n 45 THR 44 A THR 45 n 46 THR 45 A VAL 46 n 47 VAL 46 A GLU 47 n 48 GLU 47 A ALA 48 n 49 ALA 48 A ALA 49 n 50 ALA 49 A CYS 50 n 51 CYS 50 A ARG 51 n 52 ARG 51 A TYR 52 n 53 TYR 52 A ILE 53 n 54 ILE 53 A ARG 54 n 55 ARG 54 A HIS 55 n 56 HIS 55 A LEU 56 n 57 LEU 56 A GLN 57 n 58 GLN 57 A GLN 58 n 59 GLN 58 A ASN 59 n 60 ASN 59 A GLY 60 n 61 GLY 60 A SER 61 n 62 SER 61 A THR 62 n 63 THR 62 A MET 0 n 1 MET 0 B LYS 1 n 2 LYS 1 B ARG 2 n 3 ARG 2 B GLU 3 n 4 GLU 3 B SER 4 n 5 SER 4 B HIS 5 n 6 HIS 5 B LYS 6 n 7 LYS 6 B HIS 7 n 8 HIS 7 B ALA 8 n 9 ALA 8 B GLU 9 n 10 GLU 9 B GLN 10 n 11 GLN 10 B ALA 11 n 12 ALA 11 B ARG 12 n 13 ARG 12 B ARG 13 n 14 ARG 13 B ASN 14 n 15 ASN 14 B ARG 15 n 16 ARG 15 B LEU 16 n 17 LEU 16 B ALA 17 n 18 ALA 17 B VAL 18 n 19 VAL 18 B ALA 19 n 20 ALA 19 B LEU 20 n 21 LEU 20 B HIS 21 n 22 HIS 21 B GLU 22 n 23 GLU 22 B LEU 23 n 24 LEU 23 B ALA 24 n 25 ALA 24 B SER 25 n 26 SER 25 B LEU 26 n 27 LEU 26 B ILE 27 n 28 ILE 27 B PRO 28 n 29 PRO 28 B ALA 29 n 30 ALA 29 B GLU 30 n 31 GLU 30 B TRP 31 n 32 TRP 31 B LYS 32 n 33 LYS 32 B GLN 33 n 34 GLN 33 B GLN 34 n 35 GLN 34 B ASN 35 n 36 ASN 35 B VAL 36 n 37 VAL 36 B SER 37 n 38 SER 37 B ALA 38 n 39 ALA 38 B ALA 39 n 40 ALA 39 B PRO 40 n 41 PRO 40 B SER 41 n 42 SER 41 B LYS 42 n 43 LYS 42 B ALA 43 n 44 ALA 43 B THR 44 n 45 THR 44 B THR 45 n 46 THR 45 B VAL 46 n 47 VAL 46 B GLU 47 n 48 GLU 47 B ALA 48 n 49 ALA 48 B ALA 49 n 50 ALA 49 B CYS 50 n 51 CYS 50 B ARG 51 n 52 ARG 51 B TYR 52 n 53 TYR 52 B ILE 53 n 54 ILE 53 B ARG 54 n 55 ARG 54 B HIS 55 n 56 HIS 55 B LEU 56 n 57 LEU 56 B GLN 57 n 58 GLN 57 B GLN 58 n 59 GLN 58 B ASN 59 n 60 ASN 59 B GLY 60 n 61 GLY 60 B SER 61 n 62 SER 61 B THR 62 n 63 THR 62 B author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -6.02 0.80 102.40 96.38 C C C C3' C2' C1' DG DG DG 12 12 12 N 1 -16.99 1.90 112.60 95.61 D D D N9 C1' C2' DG DG DG 4 4 4 N 1 3.02 0.30 108.30 111.32 D D D O4' C1' N9 DG DG DG 4 4 4 N 1 -19.07 1.90 112.60 93.53 D D D N1 C1' C2' DT DT DT 5 5 5 N 1 2.41 0.30 108.30 110.71 D D D O4' C1' N1 DT DT DT 5 5 5 N 1 A LYS 1 -71.23 25.90 1 A ARG 2 -60.57 31.12 1 A GLU 3 -164.97 -54.69 1 A LYS 6 7.81 -78.17 1 A GLU 9 -73.15 -80.42 1 A LYS 32 -17.07 -34.58 1 A ALA 39 150.62 150.94 1 A LYS 42 -76.79 41.90 1 A ALA 43 -169.31 -53.53 1 A HIS 55 -71.63 -72.09 1 A LEU 56 -29.48 -30.43 1 A GLN 57 -52.93 -77.21 1 B LYS 1 -51.56 10.47 1 B HIS 5 -38.77 -25.15 1 B LYS 6 -78.05 -74.16 1 B HIS 7 -39.80 -34.75 1 B ALA 8 -80.25 -73.47 1 B GLU 9 -55.07 9.39 1 B LEU 16 -46.55 -19.47 1 B ALA 17 -93.87 -64.82 1 B ALA 19 -64.19 -71.36 1 B LEU 20 -39.50 -35.70 1 B GLU 22 -67.44 20.96 1 B LEU 23 -103.33 -68.91 1 B SER 25 -39.71 -26.98 1 B LEU 26 -154.05 31.89 1 B ALA 29 -60.32 88.93 1 B ASN 35 -175.00 -178.70 1 B VAL 36 -33.06 -17.82 1 B SER 37 -20.18 98.16 1 B ALA 39 172.13 120.19 1 B SER 41 -169.62 -60.68 1 B LYS 42 -125.77 -122.08 1 B ALA 43 -1.51 -73.61 PARHCSDX.PRO TOPHCSDX.PRO PARAM_NDBX.DNAE TOP_NDBX.DNA 28.40 -0.560 0.0000 0.0000 3.9000 0.0000 -3.340 0.2840000 0.2300000 2.800 8.000 948 7581 12.500 77.300 RANDOM 1000000.000 0.0010 1 THROUGHOUT 3.000 MIR 2.800 8.000 80 1767 0 691 996 0.011 2.42 23.9 1.78 0.3190000 0.2570000 2.92 86 569 8 13.10 54.90 26.20 2.800 1A0A 9398 1.000 0.0870000 1 4.2000 3.900 92.000 0.2020000 2.800 2.950 3.500 1.900 80.40 phasing MLPHARE refinement X-PLOR 3.1 data reduction WEIS data scaling CCP4 (SCALA) PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N A GLU 3 C GLU 4 HELX_P A ALA 8 C ALA 9 5 H1A 6 A GLU 9 C GLU 10 HELX_P A LEU 26 C LEU 27 1 H11 18 A PRO 28 C PRO 29 HELX_P A GLN 33 C GLN 34 1 HA 6 A ALA 43 C ALA 44 HELX_P A GLN 57 C GLN 58 1 H2A 15 B LYS 1 D LYS 2 HELX_P B LEU 26 D LEU 27 5 H1B 26 B ALA 29 D ALA 30 HELX_P B GLN 33 D GLN 34 5 HB 5 B LYS 42 D LYS 43 HELX_P B GLN 57 D GLN 58 1 H2B 16 hydrog WATSON-CRICK C DC 1 A N3 DC 1 1_555 D DG 17 B N1 DG 17 1_555 hydrog WATSON-CRICK C DC 1 A N4 DC 1 1_555 D DG 17 B O6 DG 17 1_555 hydrog WATSON-CRICK C DC 1 A O2 DC 1 1_555 D DG 17 B N2 DG 17 1_555 hydrog WATSON-CRICK C DT 2 A N3 DT 2 1_555 D DA 16 B N1 DA 16 1_555 hydrog WATSON-CRICK C DT 2 A O4 DT 2 1_555 D DA 16 B N6 DA 16 1_555 hydrog WATSON-CRICK C DC 3 A N3 DC 3 1_555 D DG 15 B N1 DG 15 1_555 hydrog WATSON-CRICK C DC 3 A N4 DC 3 1_555 D DG 15 B O6 DG 15 1_555 hydrog WATSON-CRICK C DC 3 A O2 DC 3 1_555 D DG 15 B N2 DG 15 1_555 hydrog WATSON-CRICK C DA 4 A N1 DA 4 1_555 D DT 14 B N3 DT 14 1_555 hydrog WATSON-CRICK C DA 4 A N6 DA 4 1_555 D DT 14 B O4 DT 14 1_555 hydrog DC-DT MISPAIR C DC 5 A N4 DC 5 1_555 D DT 12 B O4 DT 12 1_555 hydrog WATSON-CRICK C DC 5 A N3 DC 5 1_555 D DG 13 B N1 DG 13 1_555 hydrog WATSON-CRICK C DC 5 A N4 DC 5 1_555 D DG 13 B O6 DG 13 1_555 hydrog WATSON-CRICK C DC 5 A O2 DC 5 1_555 D DG 13 B N2 DG 13 1_555 hydrog WATSON-CRICK C DA 6 A N1 DA 6 1_555 D DT 12 B N3 DT 12 1_555 hydrog WATSON-CRICK C DA 6 A N6 DA 6 1_555 D DT 12 B O4 DT 12 1_555 hydrog WATSON-CRICK C DC 7 A N3 DC 7 1_555 D DG 11 B N1 DG 11 1_555 hydrog WATSON-CRICK C DC 7 A N4 DC 7 1_555 D DG 11 B O6 DG 11 1_555 hydrog WATSON-CRICK C DC 7 A O2 DC 7 1_555 D DG 11 B N2 DG 11 1_555 hydrog WATSON-CRICK C DG 8 A N1 DG 8 1_555 D DC 10 B N3 DC 10 1_555 hydrog WATSON-CRICK C DG 8 A N2 DG 8 1_555 D DC 10 B O2 DC 10 1_555 hydrog WATSON-CRICK C DG 8 A O6 DG 8 1_555 D DC 10 B N4 DC 10 1_555 hydrog WATSON-CRICK C DT 9 A N3 DT 9 1_555 D DA 9 B N1 DA 9 1_555 hydrog WATSON-CRICK C DT 9 A O4 DT 9 1_555 D DA 9 B N6 DA 9 1_555 hydrog WATSON-CRICK C DG 10 A N1 DG 10 1_555 D DC 8 B N3 DC 8 1_555 hydrog WATSON-CRICK C DG 10 A N2 DG 10 1_555 D DC 8 B O2 DC 8 1_555 hydrog WATSON-CRICK C DG 10 A O6 DG 10 1_555 D DC 8 B N4 DC 8 1_555 hydrog WATSON-CRICK C DG 11 A N1 DG 11 1_555 D DC 7 B N3 DC 7 1_555 hydrog WATSON-CRICK C DG 11 A N2 DG 11 1_555 D DC 7 B O2 DC 7 1_555 hydrog WATSON-CRICK C DG 11 A O6 DG 11 1_555 D DC 7 B N4 DC 7 1_555 hydrog WATSON-CRICK C DG 12 A N1 DG 12 1_555 D DC 6 B N3 DC 6 1_555 hydrog WATSON-CRICK C DG 12 A N2 DG 12 1_555 D DC 6 B O2 DC 6 1_555 hydrog WATSON-CRICK C DG 12 A O6 DG 12 1_555 D DC 6 B N4 DC 6 1_555 hydrog WATSON-CRICK C DA 13 A N1 DA 13 1_555 D DT 5 B N3 DT 5 1_555 hydrog WATSON-CRICK C DA 13 A N6 DA 13 1_555 D DT 5 B O4 DT 5 1_555 hydrog WATSON-CRICK C DC 14 A N3 DC 14 1_555 D DG 4 B N1 DG 4 1_555 hydrog WATSON-CRICK C DC 14 A N4 DC 14 1_555 D DG 4 B O6 DG 4 1_555 hydrog WATSON-CRICK C DC 14 A O2 DC 14 1_555 D DG 4 B N2 DG 4 1_555 hydrog WATSON-CRICK C DT 15 A N3 DT 15 1_555 D DA 3 B N1 DA 3 1_555 hydrog WATSON-CRICK C DT 15 A O4 DT 15 1_555 D DA 3 B N6 DA 3 1_555 hydrog WATSON-CRICK C DA 16 A N1 DA 16 1_555 D DT 2 B N3 DT 2 1_555 hydrog WATSON-CRICK C DA 16 A N6 DA 16 1_555 D DT 2 B O4 DT 2 1_555 hydrog WATSON-CRICK C DG 17 A N1 DG 17 1_555 D DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK C DG 17 A N2 DG 17 1_555 D DC 1 B O2 DC 1 1_555 hydrog WATSON-CRICK C DG 17 A O6 DG 17 1_555 D DC 1 B N4 DC 1 1_555 TRANSCRIPTION/DNA TRANSCRIPTION FACTOR, BASIC HELIX LOOP HELIX, COMPLEX (TRANSCRIPTION FACTOR-DNA), TRANSCRIPTION-DNA COMPLEX PHO4_YEAST UNP 3 P07270 1A0A PDB 1 1A0A 1A0A PDB 2 1A0A 250 312 1A0A 0 62 P07270 A 1 1 63 250 312 1A0A 0 62 P07270 B 1 1 63 1 17 1A0A 1 17 1A0A C 2 1 17 1 17 1A0A 1 17 1A0A D 3 1 17 1 ASP conflict MET 0 1A0A A P07270 UNP 250 1 1 PRO conflict ALA 19 1A0A A P07270 UNP 269 20 2 ASP conflict MET 0 1A0A B P07270 UNP 250 1 2 PRO conflict ALA 19 1A0A B P07270 UNP 269 20 19 P 21 21 21