0.012930 0.000000 0.000000 0.000000 0.010898 0.000000 0.000000 0.000000 0.011275 0.00000 0.00000 0.00000 Sugio, S. Kashima, A. Kishimoto, K. Peisach, D. Petsko, G.A. Ringe, D. Yoshimura, T. Esaki, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 77.340 91.760 88.690 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C8 H13 N2 O5 P 248.173 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE PYRIDOXAMINE-5'-PHOSPHATE non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Protein Eng. PRENE9 0859 0269-2139 11 613 619 10.1093/protein/11.8.613 9749913 Crystal structures of L201A mutant of D-amino acid aminotransferase at 2.0 A resolution: implication of the structural role of Leu201 in transamination. 1998 JA J.Biochem.(Tokyo) JOBIAO 0418 0021-924X 117 691 Role of Leucine 201 of Thermostable D-Amino Acid Aminotransferase from a Thermophile, Bacillus Sp. Ym-1 1995 US Biochemistry BICHAW 0033 0006-2960 34 9661 Crystal Structure of a D-Amino Acid Aminotransferase: How the Protein Controls Stereoselectivity 1995 10.2210/pdb1a0g/pdb pdb_00001a0g 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 YALE MIRRORS IMAGE PLATE 1996-05-29 RIGAKU NI FILTER M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R PYRIDOXAMINE-5'-PHOSPHATES ARE NON-COVALENTLY BOUND TO THE ENZYME MOLECULES 32269.826 D-AMINO ACID AMINOTRANSFERASE 2.6.1.21 L201A 2 man polymer 248.173 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE 2 syn non-polymer 18.015 water 166 nat water D-ALANINE AMINOTRANSFERASE, D-ASPARTATE AMINOTRANSFERASE no no GYTLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN ELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAH EKGCYEAILHRNNTVTEGSSSNVFGIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTS TTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETKIPKPLHI GYTLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN ELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAH EKGCYEAILHRNNTVTEGSSSNVFGIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTS TTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETKIPKPLHI A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus YM-1 Escherichia sample 72579 Bacillus sp. 562 Escherichia coli JM109 PLASMID PAZZI 1 2.42 49.4 9.0 THE PROTEIN WAS PRE-INCUBATED WITH 50MM D-ALANINE AND 50MM ALPHA-KETOGLUTARATE TO CONVERT PLP INTO PMP. THE PROTEIN WAS CRYSTALLIZED FROM 30% PEG3350, 500MM SODIUM ACETATE, 100MM TRIS/HCL, 5MM SODIUM AZIDE, PH9.0 database_2 pdbx_database_status struct_ref_seq_dif struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Source and taxonomy Version format compliance Database references Derived calculations Other Refinement description 1 0 1998-06-03 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-11-03 1 4 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-11-30 REL REL PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HOH water 1DAA PDB ENTRY 1DAA PDB experimental model PMP 285 2 PMP PMP 285 A PMP 285 2 PMP PMP 285 B HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 311 3 HOH HOH 311 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 319 3 HOH HOH 319 A HOH 322 3 HOH HOH 322 A HOH 324 3 HOH HOH 324 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 332 3 HOH HOH 332 A HOH 342 3 HOH HOH 342 A HOH 343 3 HOH HOH 343 A HOH 344 3 HOH HOH 344 A HOH 346 3 HOH HOH 346 A HOH 347 3 HOH HOH 347 A HOH 348 3 HOH HOH 348 A HOH 350 3 HOH HOH 350 A HOH 351 3 HOH HOH 351 A HOH 352 3 HOH HOH 352 A HOH 353 3 HOH HOH 353 A HOH 355 3 HOH HOH 355 A HOH 356 3 HOH HOH 356 A HOH 358 3 HOH HOH 358 A HOH 360 3 HOH HOH 360 A HOH 361 3 HOH HOH 361 A HOH 362 3 HOH HOH 362 A HOH 363 3 HOH HOH 363 A HOH 364 3 HOH HOH 364 A HOH 366 3 HOH HOH 366 A HOH 367 3 HOH HOH 367 A HOH 368 3 HOH HOH 368 A HOH 372 3 HOH HOH 372 A HOH 373 3 HOH HOH 373 A HOH 374 3 HOH HOH 374 A HOH 376 3 HOH HOH 376 A HOH 377 3 HOH HOH 377 A HOH 379 3 HOH HOH 379 A HOH 380 3 HOH HOH 380 A HOH 381 3 HOH HOH 381 A HOH 382 3 HOH HOH 382 A HOH 384 3 HOH HOH 384 A HOH 385 3 HOH HOH 385 A HOH 387 3 HOH HOH 387 A HOH 388 3 HOH HOH 388 A HOH 389 3 HOH HOH 389 A HOH 393 3 HOH HOH 393 A HOH 396 3 HOH HOH 396 A HOH 399 3 HOH HOH 399 A HOH 402 3 HOH HOH 402 A HOH 403 3 HOH HOH 403 A HOH 405 3 HOH HOH 405 A HOH 407 3 HOH HOH 407 A HOH 408 3 HOH HOH 408 A HOH 410 3 HOH HOH 410 A HOH 411 3 HOH HOH 411 A HOH 412 3 HOH HOH 412 A HOH 413 3 HOH HOH 413 A HOH 414 3 HOH HOH 414 A HOH 415 3 HOH HOH 415 A HOH 418 3 HOH HOH 418 A HOH 419 3 HOH HOH 419 A HOH 422 3 HOH HOH 422 A HOH 425 3 HOH HOH 425 A HOH 426 3 HOH HOH 426 A HOH 427 3 HOH HOH 427 A HOH 429 3 HOH HOH 429 A HOH 431 3 HOH HOH 431 A HOH 433 3 HOH HOH 433 A HOH 435 3 HOH HOH 435 A HOH 437 3 HOH HOH 437 A HOH 439 3 HOH HOH 439 A HOH 440 3 HOH HOH 440 A HOH 441 3 HOH HOH 441 A HOH 442 3 HOH HOH 442 A HOH 443 3 HOH HOH 443 A HOH 444 3 HOH HOH 444 A HOH 449 3 HOH HOH 449 A HOH 450 3 HOH HOH 450 A HOH 451 3 HOH HOH 451 A HOH 452 3 HOH HOH 452 A HOH 453 3 HOH HOH 453 A HOH 454 3 HOH HOH 454 A HOH 456 3 HOH HOH 456 A HOH 460 3 HOH HOH 460 A HOH 461 3 HOH HOH 461 A HOH 462 3 HOH HOH 462 A HOH 463 3 HOH HOH 463 A HOH 465 3 HOH HOH 465 A HOH 301 3 HOH HOH 301 B HOH 302 3 HOH HOH 302 B HOH 303 3 HOH HOH 303 B HOH 304 3 HOH HOH 304 B HOH 305 3 HOH HOH 305 B HOH 306 3 HOH HOH 306 B HOH 309 3 HOH HOH 309 B HOH 310 3 HOH HOH 310 B HOH 312 3 HOH HOH 312 B HOH 313 3 HOH HOH 313 B HOH 314 3 HOH HOH 314 B HOH 318 3 HOH HOH 318 B HOH 320 3 HOH HOH 320 B HOH 321 3 HOH HOH 321 B HOH 323 3 HOH HOH 323 B HOH 325 3 HOH HOH 325 B HOH 326 3 HOH HOH 326 B HOH 329 3 HOH HOH 329 B HOH 330 3 HOH HOH 330 B HOH 331 3 HOH HOH 331 B HOH 333 3 HOH HOH 333 B HOH 334 3 HOH HOH 334 B HOH 335 3 HOH HOH 335 B HOH 336 3 HOH HOH 336 B HOH 337 3 HOH HOH 337 B HOH 338 3 HOH HOH 338 B HOH 339 3 HOH HOH 339 B HOH 340 3 HOH HOH 340 B HOH 341 3 HOH HOH 341 B HOH 345 3 HOH HOH 345 B HOH 349 3 HOH HOH 349 B HOH 354 3 HOH HOH 354 B HOH 357 3 HOH HOH 357 B HOH 359 3 HOH HOH 359 B HOH 365 3 HOH HOH 365 B HOH 369 3 HOH HOH 369 B HOH 370 3 HOH HOH 370 B HOH 371 3 HOH HOH 371 B HOH 375 3 HOH HOH 375 B HOH 378 3 HOH HOH 378 B HOH 383 3 HOH HOH 383 B HOH 386 3 HOH HOH 386 B HOH 390 3 HOH HOH 390 B HOH 391 3 HOH HOH 391 B HOH 392 3 HOH HOH 392 B HOH 394 3 HOH HOH 394 B HOH 395 3 HOH HOH 395 B HOH 397 3 HOH HOH 397 B HOH 398 3 HOH HOH 398 B HOH 400 3 HOH HOH 400 B HOH 401 3 HOH HOH 401 B HOH 404 3 HOH HOH 404 B HOH 406 3 HOH HOH 406 B HOH 409 3 HOH HOH 409 B HOH 416 3 HOH HOH 416 B HOH 417 3 HOH HOH 417 B HOH 420 3 HOH HOH 420 B HOH 421 3 HOH HOH 421 B HOH 423 3 HOH HOH 423 B HOH 424 3 HOH HOH 424 B HOH 428 3 HOH HOH 428 B HOH 430 3 HOH HOH 430 B HOH 432 3 HOH HOH 432 B HOH 434 3 HOH HOH 434 B HOH 436 3 HOH HOH 436 B HOH 438 3 HOH HOH 438 B HOH 445 3 HOH HOH 445 B HOH 446 3 HOH HOH 446 B HOH 447 3 HOH HOH 447 B HOH 448 3 HOH HOH 448 B HOH 455 3 HOH HOH 455 B HOH 457 3 HOH HOH 457 B HOH 458 3 HOH HOH 458 B HOH 459 3 HOH HOH 459 B HOH 464 3 HOH HOH 464 B HOH 466 3 HOH HOH 466 B GLY 1 n 1 GLY 1 A TYR 2 n 2 TYR 2 A THR 3 n 3 THR 3 A LEU 4 n 4 LEU 4 A TRP 5 n 5 TRP 5 A ASN 6 n 6 ASN 6 A ASP 7 n 7 ASP 7 A GLN 8 n 8 GLN 8 A ILE 9 n 9 ILE 9 A VAL 10 n 10 VAL 10 A LYS 11 n 11 LYS 11 A ASP 12 n 12 ASP 12 A GLU 13 n 13 GLU 13 A GLU 14 n 14 GLU 14 A VAL 15 n 15 VAL 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A ASP 18 n 18 ASP 18 A LYS 19 n 19 LYS 19 A GLU 20 n 20 GLU 20 A ASP 21 n 21 ASP 21 A ARG 22 n 22 ARG 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A GLN 25 n 25 GLN 25 A PHE 26 n 26 PHE 26 A GLY 27 n 27 GLY 27 A ASP 28 n 28 ASP 28 A GLY 29 n 29 GLY 29 A VAL 30 n 30 VAL 30 A TYR 31 n 31 TYR 31 A GLU 32 n 32 GLU 32 A VAL 33 n 33 VAL 33 A VAL 34 n 34 VAL 34 A LYS 35 n 35 LYS 35 A VAL 36 n 36 VAL 36 A TYR 37 n 37 TYR 37 A ASN 38 n 38 ASN 38 A GLY 39 n 39 GLY 39 A GLU 40 n 40 GLU 40 A MET 41 n 41 MET 41 A PHE 42 n 42 PHE 42 A THR 43 n 43 THR 43 A VAL 44 n 44 VAL 44 A ASN 45 n 45 ASN 45 A GLU 46 n 46 GLU 46 A HIS 47 n 47 HIS 47 A ILE 48 n 48 ILE 48 A ASP 49 n 49 ASP 49 A ARG 50 n 50 ARG 50 A LEU 51 n 51 LEU 51 A TYR 52 n 52 TYR 52 A ALA 53 n 53 ALA 53 A SER 54 n 54 SER 54 A ALA 55 n 55 ALA 55 A GLU 56 n 56 GLU 56 A LYS 57 n 57 LYS 57 A ILE 58 n 58 ILE 58 A ARG 59 n 59 ARG 59 A ILE 60 n 60 ILE 60 A THR 61 n 61 THR 61 A ILE 62 n 62 ILE 62 A PRO 63 n 63 PRO 63 A TYR 64 n 64 TYR 64 A THR 65 n 65 THR 65 A LYS 66 n 66 LYS 66 A ASP 67 n 67 ASP 67 A LYS 68 n 68 LYS 68 A PHE 69 n 69 PHE 69 A HIS 70 n 70 HIS 70 A GLN 71 n 71 GLN 71 A LEU 72 n 72 LEU 72 A LEU 73 n 73 LEU 73 A HIS 74 n 74 HIS 74 A GLU 75 n 75 GLU 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLU 78 n 78 GLU 78 A LYS 79 n 79 LYS 79 A ASN 80 n 80 ASN 80 A GLU 81 n 81 GLU 81 A LEU 82 n 82 LEU 82 A ASN 83 n 83 ASN 83 A THR 84 n 84 THR 84 A GLY 85 n 85 GLY 85 A HIS 86 n 86 HIS 86 A ILE 87 n 87 ILE 87 A TYR 88 n 88 TYR 88 A PHE 89 n 89 PHE 89 A GLN 90 n 90 GLN 90 A VAL 91 n 91 VAL 91 A THR 92 n 92 THR 92 A ARG 93 n 93 ARG 93 A GLY 94 n 94 GLY 94 A THR 95 n 95 THR 95 A SER 96 n 96 SER 96 A PRO 97 n 97 PRO 97 A ARG 98 n 98 ARG 98 A ALA 99 n 99 ALA 99 A HIS 100 n 100 HIS 100 A GLN 101 n 101 GLN 101 A PHE 102 n 102 PHE 102 A PRO 103 n 103 PRO 103 A GLU 104 n 104 GLU 104 A ASN 105 n 105 ASN 105 A THR 106 n 106 THR 106 A VAL 107 n 107 VAL 107 A LYS 108 n 108 LYS 108 A PRO 109 n 109 PRO 109 A VAL 110 n 110 VAL 110 A ILE 111 n 111 ILE 111 A ILE 112 n 112 ILE 112 A GLY 113 n 113 GLY 113 A TYR 114 n 114 TYR 114 A THR 115 n 115 THR 115 A LYS 116 n 116 LYS 116 A GLU 117 n 117 GLU 117 A ASN 118 n 118 ASN 118 A PRO 119 n 119 PRO 119 A ARG 120 n 120 ARG 120 A PRO 121 n 121 PRO 121 A LEU 122 n 122 LEU 122 A GLU 123 n 123 GLU 123 A ASN 124 n 124 ASN 124 A LEU 125 n 125 LEU 125 A GLU 126 n 126 GLU 126 A LYS 127 n 127 LYS 127 A GLY 128 n 128 GLY 128 A VAL 129 n 129 VAL 129 A LYS 130 n 130 LYS 130 A ALA 131 n 131 ALA 131 A THR 132 n 132 THR 132 A PHE 133 n 133 PHE 133 A VAL 134 n 134 VAL 134 A GLU 135 n 135 GLU 135 A ASP 136 n 136 ASP 136 A ILE 137 n 137 ILE 137 A ARG 138 n 138 ARG 138 A TRP 139 n 139 TRP 139 A LEU 140 n 140 LEU 140 A ARG 141 n 141 ARG 141 A CYS 142 n 142 CYS 142 A ASP 143 n 143 ASP 143 A ILE 144 n 144 ILE 144 A LYS 145 n 145 LYS 145 A SER 146 n 146 SER 146 A LEU 147 n 147 LEU 147 A ASN 148 n 148 ASN 148 A LEU 149 n 149 LEU 149 A LEU 150 n 150 LEU 150 A GLY 151 n 151 GLY 151 A ALA 152 n 152 ALA 152 A VAL 153 n 153 VAL 153 A LEU 154 n 154 LEU 154 A ALA 155 n 155 ALA 155 A LYS 156 n 156 LYS 156 A GLN 157 n 157 GLN 157 A GLU 158 n 158 GLU 158 A ALA 159 n 159 ALA 159 A HIS 160 n 160 HIS 160 A GLU 161 n 161 GLU 161 A LYS 162 n 162 LYS 162 A GLY 163 n 163 GLY 163 A CYS 164 n 164 CYS 164 A TYR 165 n 165 TYR 165 A GLU 166 n 166 GLU 166 A ALA 167 n 167 ALA 167 A ILE 168 n 168 ILE 168 A LEU 169 n 169 LEU 169 A HIS 170 n 170 HIS 170 A ARG 171 n 171 ARG 171 A ASN 172 n 172 ASN 172 A ASN 173 n 173 ASN 173 A THR 174 n 174 THR 174 A VAL 175 n 175 VAL 175 A THR 176 n 176 THR 176 A GLU 177 n 177 GLU 177 A GLY 178 n 178 GLY 178 A SER 179 n 179 SER 179 A SER 180 n 180 SER 180 A SER 181 n 181 SER 181 A ASN 182 n 182 ASN 182 A VAL 183 n 183 VAL 183 A PHE 184 n 184 PHE 184 A GLY 185 n 185 GLY 185 A ILE 186 n 186 ILE 186 A LYS 187 n 187 LYS 187 A ASP 188 n 188 ASP 188 A GLY 189 n 189 GLY 189 A ILE 190 n 190 ILE 190 A LEU 191 n 191 LEU 191 A TYR 192 n 192 TYR 192 A THR 193 n 193 THR 193 A HIS 194 n 194 HIS 194 A PRO 195 n 195 PRO 195 A ALA 196 n 196 ALA 196 A ASN 197 n 197 ASN 197 A ASN 198 n 198 ASN 198 A MET 199 n 199 MET 199 A ILE 200 n 200 ILE 200 A ALA 201 n 201 ALA 201 A LYS 202 n 202 LYS 202 A GLY 203 n 203 GLY 203 A ILE 204 n 204 ILE 204 A THR 205 n 205 THR 205 A ARG 206 n 206 ARG 206 A ASP 207 n 207 ASP 207 A VAL 208 n 208 VAL 208 A VAL 209 n 209 VAL 209 A ILE 210 n 210 ILE 210 A ALA 211 n 211 ALA 211 A CYS 212 n 212 CYS 212 A ALA 213 n 213 ALA 213 A ASN 214 n 214 ASN 214 A GLU 215 n 215 GLU 215 A ILE 216 n 216 ILE 216 A ASN 217 n 217 ASN 217 A MET 218 n 218 MET 218 A PRO 219 n 219 PRO 219 A VAL 220 n 220 VAL 220 A LYS 221 n 221 LYS 221 A GLU 222 n 222 GLU 222 A ILE 223 n 223 ILE 223 A PRO 224 n 224 PRO 224 A PHE 225 n 225 PHE 225 A THR 226 n 226 THR 226 A THR 227 n 227 THR 227 A HIS 228 n 228 HIS 228 A GLU 229 n 229 GLU 229 A ALA 230 n 230 ALA 230 A LEU 231 n 231 LEU 231 A LYS 232 n 232 LYS 232 A MET 233 n 233 MET 233 A ASP 234 n 234 ASP 234 A GLU 235 n 235 GLU 235 A LEU 236 n 236 LEU 236 A PHE 237 n 237 PHE 237 A VAL 238 n 238 VAL 238 A THR 239 n 239 THR 239 A SER 240 n 240 SER 240 A THR 241 n 241 THR 241 A THR 242 n 242 THR 242 A SER 243 n 243 SER 243 A GLU 244 n 244 GLU 244 A ILE 245 n 245 ILE 245 A THR 246 n 246 THR 246 A PRO 247 n 247 PRO 247 A VAL 248 n 248 VAL 248 A ILE 249 n 249 ILE 249 A GLU 250 n 250 GLU 250 A ILE 251 n 251 ILE 251 A ASP 252 n 252 ASP 252 A GLY 253 n 253 GLY 253 A LYS 254 n 254 LYS 254 A LEU 255 n 255 LEU 255 A ILE 256 n 256 ILE 256 A ARG 257 n 257 ARG 257 A ASP 258 n 258 ASP 258 A GLY 259 n 259 GLY 259 A LYS 260 n 260 LYS 260 A VAL 261 n 261 VAL 261 A GLY 262 n 262 GLY 262 A GLU 263 n 263 GLU 263 A TRP 264 n 264 TRP 264 A THR 265 n 265 THR 265 A ARG 266 n 266 ARG 266 A LYS 267 n 267 LYS 267 A LEU 268 n 268 LEU 268 A GLN 269 n 269 GLN 269 A LYS 270 n 270 LYS 270 A GLN 271 n 271 GLN 271 A PHE 272 n 272 PHE 272 A GLU 273 n 273 GLU 273 A THR 274 n 274 THR 274 A LYS 275 n 275 LYS 275 A ILE 276 n 276 ILE 276 A PRO 277 n 277 PRO 277 A LYS 278 n 278 LYS 278 A PRO 279 n 279 PRO 279 A LEU 280 n 280 LEU 280 A n 281 281 A n 282 282 A GLY 1 n 1 GLY 1 B TYR 2 n 2 TYR 2 B THR 3 n 3 THR 3 B LEU 4 n 4 LEU 4 B TRP 5 n 5 TRP 5 B ASN 6 n 6 ASN 6 B ASP 7 n 7 ASP 7 B GLN 8 n 8 GLN 8 B ILE 9 n 9 ILE 9 B VAL 10 n 10 VAL 10 B LYS 11 n 11 LYS 11 B ASP 12 n 12 ASP 12 B GLU 13 n 13 GLU 13 B GLU 14 n 14 GLU 14 B VAL 15 n 15 VAL 15 B LYS 16 n 16 LYS 16 B ILE 17 n 17 ILE 17 B ASP 18 n 18 ASP 18 B LYS 19 n 19 LYS 19 B GLU 20 n 20 GLU 20 B ASP 21 n 21 ASP 21 B ARG 22 n 22 ARG 22 B GLY 23 n 23 GLY 23 B TYR 24 n 24 TYR 24 B GLN 25 n 25 GLN 25 B PHE 26 n 26 PHE 26 B GLY 27 n 27 GLY 27 B ASP 28 n 28 ASP 28 B GLY 29 n 29 GLY 29 B VAL 30 n 30 VAL 30 B TYR 31 n 31 TYR 31 B GLU 32 n 32 GLU 32 B VAL 33 n 33 VAL 33 B VAL 34 n 34 VAL 34 B LYS 35 n 35 LYS 35 B VAL 36 n 36 VAL 36 B TYR 37 n 37 TYR 37 B ASN 38 n 38 ASN 38 B GLY 39 n 39 GLY 39 B GLU 40 n 40 GLU 40 B MET 41 n 41 MET 41 B PHE 42 n 42 PHE 42 B THR 43 n 43 THR 43 B VAL 44 n 44 VAL 44 B ASN 45 n 45 ASN 45 B GLU 46 n 46 GLU 46 B HIS 47 n 47 HIS 47 B ILE 48 n 48 ILE 48 B ASP 49 n 49 ASP 49 B ARG 50 n 50 ARG 50 B LEU 51 n 51 LEU 51 B TYR 52 n 52 TYR 52 B ALA 53 n 53 ALA 53 B SER 54 n 54 SER 54 B ALA 55 n 55 ALA 55 B GLU 56 n 56 GLU 56 B LYS 57 n 57 LYS 57 B ILE 58 n 58 ILE 58 B ARG 59 n 59 ARG 59 B ILE 60 n 60 ILE 60 B THR 61 n 61 THR 61 B ILE 62 n 62 ILE 62 B PRO 63 n 63 PRO 63 B TYR 64 n 64 TYR 64 B THR 65 n 65 THR 65 B LYS 66 n 66 LYS 66 B ASP 67 n 67 ASP 67 B LYS 68 n 68 LYS 68 B PHE 69 n 69 PHE 69 B HIS 70 n 70 HIS 70 B GLN 71 n 71 GLN 71 B LEU 72 n 72 LEU 72 B LEU 73 n 73 LEU 73 B HIS 74 n 74 HIS 74 B GLU 75 n 75 GLU 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLU 78 n 78 GLU 78 B LYS 79 n 79 LYS 79 B ASN 80 n 80 ASN 80 B GLU 81 n 81 GLU 81 B LEU 82 n 82 LEU 82 B ASN 83 n 83 ASN 83 B THR 84 n 84 THR 84 B GLY 85 n 85 GLY 85 B HIS 86 n 86 HIS 86 B ILE 87 n 87 ILE 87 B TYR 88 n 88 TYR 88 B PHE 89 n 89 PHE 89 B GLN 90 n 90 GLN 90 B VAL 91 n 91 VAL 91 B THR 92 n 92 THR 92 B ARG 93 n 93 ARG 93 B GLY 94 n 94 GLY 94 B THR 95 n 95 THR 95 B SER 96 n 96 SER 96 B PRO 97 n 97 PRO 97 B ARG 98 n 98 ARG 98 B ALA 99 n 99 ALA 99 B HIS 100 n 100 HIS 100 B GLN 101 n 101 GLN 101 B PHE 102 n 102 PHE 102 B PRO 103 n 103 PRO 103 B GLU 104 n 104 GLU 104 B ASN 105 n 105 ASN 105 B THR 106 n 106 THR 106 B VAL 107 n 107 VAL 107 B LYS 108 n 108 LYS 108 B PRO 109 n 109 PRO 109 B VAL 110 n 110 VAL 110 B ILE 111 n 111 ILE 111 B ILE 112 n 112 ILE 112 B GLY 113 n 113 GLY 113 B TYR 114 n 114 TYR 114 B THR 115 n 115 THR 115 B LYS 116 n 116 LYS 116 B GLU 117 n 117 GLU 117 B ASN 118 n 118 ASN 118 B PRO 119 n 119 PRO 119 B ARG 120 n 120 ARG 120 B PRO 121 n 121 PRO 121 B LEU 122 n 122 LEU 122 B GLU 123 n 123 GLU 123 B ASN 124 n 124 ASN 124 B LEU 125 n 125 LEU 125 B GLU 126 n 126 GLU 126 B LYS 127 n 127 LYS 127 B GLY 128 n 128 GLY 128 B VAL 129 n 129 VAL 129 B LYS 130 n 130 LYS 130 B ALA 131 n 131 ALA 131 B THR 132 n 132 THR 132 B PHE 133 n 133 PHE 133 B VAL 134 n 134 VAL 134 B GLU 135 n 135 GLU 135 B ASP 136 n 136 ASP 136 B ILE 137 n 137 ILE 137 B ARG 138 n 138 ARG 138 B TRP 139 n 139 TRP 139 B LEU 140 n 140 LEU 140 B ARG 141 n 141 ARG 141 B CYS 142 n 142 CYS 142 B ASP 143 n 143 ASP 143 B ILE 144 n 144 ILE 144 B LYS 145 n 145 LYS 145 B SER 146 n 146 SER 146 B LEU 147 n 147 LEU 147 B ASN 148 n 148 ASN 148 B LEU 149 n 149 LEU 149 B LEU 150 n 150 LEU 150 B GLY 151 n 151 GLY 151 B ALA 152 n 152 ALA 152 B VAL 153 n 153 VAL 153 B LEU 154 n 154 LEU 154 B ALA 155 n 155 ALA 155 B LYS 156 n 156 LYS 156 B GLN 157 n 157 GLN 157 B GLU 158 n 158 GLU 158 B ALA 159 n 159 ALA 159 B HIS 160 n 160 HIS 160 B GLU 161 n 161 GLU 161 B LYS 162 n 162 LYS 162 B GLY 163 n 163 GLY 163 B CYS 164 n 164 CYS 164 B TYR 165 n 165 TYR 165 B GLU 166 n 166 GLU 166 B ALA 167 n 167 ALA 167 B ILE 168 n 168 ILE 168 B LEU 169 n 169 LEU 169 B HIS 170 n 170 HIS 170 B ARG 171 n 171 ARG 171 B ASN 172 n 172 ASN 172 B ASN 173 n 173 ASN 173 B THR 174 n 174 THR 174 B VAL 175 n 175 VAL 175 B THR 176 n 176 THR 176 B GLU 177 n 177 GLU 177 B GLY 178 n 178 GLY 178 B SER 179 n 179 SER 179 B SER 180 n 180 SER 180 B SER 181 n 181 SER 181 B ASN 182 n 182 ASN 182 B VAL 183 n 183 VAL 183 B PHE 184 n 184 PHE 184 B GLY 185 n 185 GLY 185 B ILE 186 n 186 ILE 186 B LYS 187 n 187 LYS 187 B ASP 188 n 188 ASP 188 B GLY 189 n 189 GLY 189 B ILE 190 n 190 ILE 190 B LEU 191 n 191 LEU 191 B TYR 192 n 192 TYR 192 B THR 193 n 193 THR 193 B HIS 194 n 194 HIS 194 B PRO 195 n 195 PRO 195 B ALA 196 n 196 ALA 196 B ASN 197 n 197 ASN 197 B ASN 198 n 198 ASN 198 B MET 199 n 199 MET 199 B ILE 200 n 200 ILE 200 B ALA 201 n 201 ALA 201 B LYS 202 n 202 LYS 202 B GLY 203 n 203 GLY 203 B ILE 204 n 204 ILE 204 B THR 205 n 205 THR 205 B ARG 206 n 206 ARG 206 B ASP 207 n 207 ASP 207 B VAL 208 n 208 VAL 208 B VAL 209 n 209 VAL 209 B ILE 210 n 210 ILE 210 B ALA 211 n 211 ALA 211 B CYS 212 n 212 CYS 212 B ALA 213 n 213 ALA 213 B ASN 214 n 214 ASN 214 B GLU 215 n 215 GLU 215 B ILE 216 n 216 ILE 216 B ASN 217 n 217 ASN 217 B MET 218 n 218 MET 218 B PRO 219 n 219 PRO 219 B VAL 220 n 220 VAL 220 B LYS 221 n 221 LYS 221 B GLU 222 n 222 GLU 222 B ILE 223 n 223 ILE 223 B PRO 224 n 224 PRO 224 B PHE 225 n 225 PHE 225 B THR 226 n 226 THR 226 B THR 227 n 227 THR 227 B HIS 228 n 228 HIS 228 B GLU 229 n 229 GLU 229 B ALA 230 n 230 ALA 230 B LEU 231 n 231 LEU 231 B LYS 232 n 232 LYS 232 B MET 233 n 233 MET 233 B ASP 234 n 234 ASP 234 B GLU 235 n 235 GLU 235 B LEU 236 n 236 LEU 236 B PHE 237 n 237 PHE 237 B VAL 238 n 238 VAL 238 B THR 239 n 239 THR 239 B SER 240 n 240 SER 240 B THR 241 n 241 THR 241 B THR 242 n 242 THR 242 B SER 243 n 243 SER 243 B GLU 244 n 244 GLU 244 B ILE 245 n 245 ILE 245 B THR 246 n 246 THR 246 B PRO 247 n 247 PRO 247 B VAL 248 n 248 VAL 248 B ILE 249 n 249 ILE 249 B GLU 250 n 250 GLU 250 B ILE 251 n 251 ILE 251 B ASP 252 n 252 ASP 252 B GLY 253 n 253 GLY 253 B LYS 254 n 254 LYS 254 B LEU 255 n 255 LEU 255 B ILE 256 n 256 ILE 256 B ARG 257 n 257 ARG 257 B ASP 258 n 258 ASP 258 B GLY 259 n 259 GLY 259 B LYS 260 n 260 LYS 260 B VAL 261 n 261 VAL 261 B GLY 262 n 262 GLY 262 B GLU 263 n 263 GLU 263 B TRP 264 n 264 TRP 264 B THR 265 n 265 THR 265 B ARG 266 n 266 ARG 266 B LYS 267 n 267 LYS 267 B LEU 268 n 268 LEU 268 B GLN 269 n 269 GLN 269 B LYS 270 n 270 LYS 270 B GLN 271 n 271 GLN 271 B PHE 272 n 272 PHE 272 B GLU 273 n 273 GLU 273 B THR 274 n 274 THR 274 B LYS 275 n 275 LYS 275 B ILE 276 n 276 ILE 276 B PRO 277 n 277 PRO 277 B LYS 278 n 278 LYS 278 B PRO 279 n 279 PRO 279 B LEU 280 n 280 LEU 280 B HIS 281 n 281 HIS 281 B ILE 282 n 282 ILE 282 B author_and_software_defined_assembly PISA 2 dimeric 5720 -30 23280 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 8 A O GLN 8 A N TRP 5 A N TRP 5 A O LEU 4 A O LEU 4 A N GLY 113 A N GLY 113 A O VAL 110 A O VAL 110 A N THR 92 A N THR 92 A O GLY 85 A O GLY 85 A N VAL 36 A N VAL 36 A O GLU 166 A O GLU 166 A N THR 132 A N THR 132 A O VAL 129 A O VAL 129 A N ILE 249 A N ILE 249 A O PRO 219 A O PRO 219 A N LEU 191 A N LEU 191 A O ILE 190 A O ILE 190 A N LYS 187 A N LYS 187 A O ASN 182 A O ASN 182 A N THR 239 A N THR 239 A O VAL 238 A O VAL 238 A N THR 246 A N THR 246 B O GLN 8 B O GLN 8 B N TRP 5 B N TRP 5 B O LEU 4 B O LEU 4 B N GLY 113 B N GLY 113 B O VAL 110 B O VAL 110 B N THR 92 B N THR 92 B O GLY 85 B O GLY 85 B N VAL 36 B N VAL 36 B O GLU 166 B O GLU 166 B N THR 132 B N THR 132 B O VAL 129 B O VAL 129 B N ILE 249 B N ILE 249 B O PRO 219 B O PRO 219 B N LEU 191 B N LEU 191 B O ILE 190 B O ILE 190 B N LYS 187 B N LYS 187 B O ASN 182 B O ASN 182 B N THR 239 B N THR 239 B O VAL 238 B O VAL 238 B N THR 246 B N THR 246 1 A HIS 281 A HIS 281 1 Y 1 A ILE 282 A ILE 282 1 Y 1 A ASN 6 72.09 -114.13 1 A ASN 83 -94.96 -73.07 1 A ASN 105 -52.36 -2.51 1 A ASN 118 -161.56 114.54 1 A ASN 173 71.84 -7.88 1 A THR 176 -107.22 -76.48 1 A SER 180 -146.34 29.01 1 A ASN 197 -118.91 -160.20 1 A GLU 244 53.62 -121.24 1 A ARG 257 52.49 -102.15 1 A LYS 278 -141.49 48.17 1 B ASN 6 67.18 -103.07 1 B PRO 63 -59.40 -8.66 1 B ASN 83 -85.46 -86.10 1 B ASN 105 -52.58 1.00 1 B THR 176 -100.37 -76.84 1 B SER 180 -148.36 27.70 1 B ASN 197 -116.47 -152.35 1 B GLU 244 56.19 -119.83 1 B ARG 257 60.26 -116.57 1 B PRO 279 -68.10 -141.08 1 B LEU 280 -142.14 -11.77 1 B HIS 281 -145.98 -31.07 PARHCSDX.PRO TOPHCSDX.PRO PARAM_COM.PRO TOP_CO.PRO 25.6 A RESOLUTION-DEPENDENT WEIGHTING SCHEME WAS EMPLOYED, AND A BULK SOLVENT CORRECTION WAS APPLIED. 0.2630000 0.007 0.2160000 0.2160000 2.0 50.0 1572 38938 4.0 89.9 RANDOM 100000.0 0.1 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1DAA 0.20 5.0 2.0 50.0 166 4723 32 0 4525 0.009 1.41 23.8 1.34 1.50 2.00 2.00 2.50 0.3160000 0.028 0.2780000 2.07 130 3020 10 4.1 74.0 24.1 1.79 88.69 1A0G 48469 1. 0.0900000 1 7.50 4.7 80.8 0.3560000 1.79 1.90 1.58 1 50.6 model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction PROCESS data scaling PROCESS phasing X-PLOR 3.1 L201A MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE-5'-PHOSPHATE 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A ASP 12 A ASP 12 HELX_P A GLU 14 A GLU 14 5 1 3 A ARG 22 A ARG 22 HELX_P A PHE 26 A PHE 26 1 2 5 A VAL 44 A VAL 44 HELX_P A ILE 58 A ILE 58 1 3 15 A LYS 66 A LYS 66 HELX_P A ASN 80 A ASN 80 1 4 15 A LEU 122 A LEU 122 HELX_P A LYS 127 A LYS 127 1 5 6 A LEU 150 A LEU 150 HELX_P A LYS 162 A LYS 162 1 6 13 A ILE 204 A ILE 204 HELX_P A GLU 215 A GLU 215 1 7 12 A THR 227 A THR 227 HELX_P A LYS 232 A LYS 232 1 8 6 A GLU 263 A GLU 263 HELX_P A THR 274 A THR 274 1 9 12 B ASP 12 B ASP 12 HELX_P B GLU 14 B GLU 14 5 10 3 B ARG 22 B ARG 22 HELX_P B PHE 26 B PHE 26 1 11 5 B VAL 44 B VAL 44 HELX_P B ILE 58 B ILE 58 1 12 15 B LYS 66 B LYS 66 HELX_P B ASN 80 B ASN 80 1 13 15 B LEU 122 B LEU 122 HELX_P B LYS 127 B LYS 127 1 14 6 B LEU 150 B LEU 150 HELX_P B LYS 162 B LYS 162 1 15 13 B ILE 204 B ILE 204 HELX_P B GLU 215 B GLU 215 1 16 12 B THR 227 B THR 227 HELX_P B LYS 232 B LYS 232 1 17 6 B GLU 263 B GLU 263 HELX_P B THR 274 B THR 274 1 18 12 TRANSFERASE TRANSFERASE, AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE, D-AMINO ACID, D-ALANINE, ALPHA-KETOGLUTAMIC ACID given -0.192403 0.080520 0.978007 0.089886 -0.990992 0.099272 0.977191 0.107009 0.183432 17.82360 24.17280 -16.83520 DAAA_BACYM UNP 1 1 P19938 GYTLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN ELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAH EKGCYEAILHRNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTS TTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETKIPKPLHI 1 282 1A0G 1 282 P19938 A 1 1 282 1 282 1A0G 1 282 P19938 B 1 1 282 1 LEU engineered mutation ALA 201 1A0G A P19938 UNP 201 201 2 LEU engineered mutation ALA 201 1A0G B P19938 UNP 201 201 5 3 5 5 3 5 anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel A GLN 8 A GLN 8 A LYS 11 A LYS 11 A TYR 2 A TYR 2 A TRP 5 A TRP 5 A VAL 110 A VAL 110 A GLU 117 A GLU 117 A GLY 85 A GLY 85 A THR 92 A THR 92 A GLY 29 A GLY 29 A VAL 36 A VAL 36 A GLU 166 A GLU 166 A HIS 170 A HIS 170 A VAL 129 A VAL 129 A GLU 135 A GLU 135 A VAL 248 A VAL 248 A ILE 251 A ILE 251 A PRO 219 A PRO 219 A LYS 221 A LYS 221 A ILE 190 A ILE 190 A THR 193 A THR 193 A ASN 182 A ASN 182 A LYS 187 A LYS 187 A GLU 235 A GLU 235 A SER 240 A SER 240 A GLU 244 A GLU 244 A PRO 247 A PRO 247 B GLN 8 B GLN 8 B LYS 11 B LYS 11 B TYR 2 B TYR 2 B TRP 5 B TRP 5 B VAL 110 B VAL 110 B GLU 117 B GLU 117 B GLY 85 B GLY 85 B THR 92 B THR 92 B GLY 29 B GLY 29 B VAL 36 B VAL 36 B GLU 166 B GLU 166 B HIS 170 B HIS 170 B VAL 129 B VAL 129 B GLU 135 B GLU 135 B VAL 248 B VAL 248 B ILE 251 B ILE 251 B PRO 219 B PRO 219 B LYS 221 B LYS 221 B ILE 190 B ILE 190 B THR 193 B THR 193 B ASN 182 B ASN 182 B LYS 187 B LYS 187 B GLU 235 B GLU 235 B SER 240 B SER 240 B GLU 244 B GLU 244 B PRO 247 B PRO 247 AN ACTIVE SITE FOR SUBUNIT A. Unknown 5 AN ACTIVE SITE FOR SUBUNIT B. Unknown 5 BINDING SITE FOR RESIDUE PMP A 285 A PMP 285 Software 16 BINDING SITE FOR RESIDUE PMP B 285 B PMP 285 Software 14 A PMP 285 C PMP 5 1_555 A LYS 145 A LYS 145 5 1_555 A TYR 31 A TYR 31 5 1_555 A GLU 177 A GLU 177 5 1_555 B ARG 98 B ARG 98 5 1_555 B PMP 285 D PMP 5 1_555 B LYS 145 B LYS 145 5 1_555 B TYR 31 B TYR 31 5 1_555 B GLU 177 B GLU 177 5 1_555 A ARG 98 A ARG 98 5 1_555 A TYR 31 A TYR 31 16 1_555 A ARG 50 A ARG 50 16 1_555 A LYS 145 A LYS 145 16 1_555 A GLU 177 A GLU 177 16 1_555 A SER 180 A SER 180 16 1_555 A SER 181 A SER 181 16 1_555 A ASN 182 A ASN 182 16 1_555 A ALA 201 A ALA 201 16 1_555 A GLY 203 A GLY 203 16 1_555 A ILE 204 A ILE 204 16 1_555 A THR 205 A THR 205 16 1_555 A SER 240 A SER 240 16 1_555 A THR 241 A THR 241 16 1_555 A HOH 322 E HOH 16 1_555 A HOH 344 E HOH 16 1_555 A HOH 418 E HOH 16 1_555 B TYR 31 B TYR 31 14 1_555 B ARG 50 B ARG 50 14 1_555 B LYS 145 B LYS 145 14 1_555 B GLU 177 B GLU 177 14 1_555 B SER 180 B SER 180 14 1_555 B SER 181 B SER 181 14 1_555 B ASN 182 B ASN 182 14 1_555 B GLY 203 B GLY 203 14 1_555 B ILE 204 B ILE 204 14 1_555 B THR 205 B THR 205 14 1_555 B SER 240 B SER 240 14 1_555 B THR 241 B THR 241 14 1_555 B HOH 302 F HOH 14 1_555 B HOH 340 F HOH 14 1_555 19 P 21 21 21