0.005372
0.000000
0.000000
0.000000
0.005372
0.000000
0.000000
0.000000
0.008313
0.00000
0.00000
0.00000
Martin, P.D.
Malkowski, M.G.
Box, J.
Esmon, C.T.
Edwards, B.F.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
186.150
186.150
120.290
C21 H34 Cl N6 O3 1
453.986
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
PPACK
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
R
C
N
3
N
C
N
4
N
O
N
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
N
12
N
N
N
13
S
C
N
14
N
C
N
15
N
O
N
16
N
C
N
17
N
C
N
18
N
C
N
19
N
N
N
20
S
C
N
21
S
C
N
22
N
O
N
23
N
C
N
24
N
C
N
25
N
C
N
26
N
N
N
27
N
C
N
28
N
N
N
29
N
N
N
30
N
C
N
31
N
CL
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
O
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
N
N
87
N
C
N
88
N
N
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
N
N
140
R
C
N
141
N
C
N
142
N
O
N
143
N
C
N
144
N
S
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
N
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
O
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
Y
207
N
C
Y
208
N
N
Y
209
N
C
Y
210
N
C
Y
211
N
N
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
S
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
N
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
S
N
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
R
C
N
316
R
C
N
317
R
C
N
318
S
C
N
319
R
C
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
N
N
324
N
O
N
325
N
O
N
326
N
O
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
N
373
N
C
N
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
R
C
N
404
N
O
N
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
N
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
N
454
N
O
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
N
C
N
472
N
C
N
473
N
C
N
474
N
O
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
Y
12
N
doub
Y
13
N
sing
Y
14
N
sing
N
15
N
sing
Y
16
N
doub
N
17
N
sing
Y
18
N
doub
N
19
N
sing
Y
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
Y
206
N
sing
Y
207
N
doub
Y
208
N
doub
N
209
N
sing
Y
210
N
sing
N
211
N
sing
Y
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
doub
Y
414
N
sing
Y
415
N
sing
N
416
N
sing
Y
417
N
doub
Y
418
N
sing
Y
419
N
sing
N
420
N
sing
Y
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
Y
441
N
doub
Y
442
N
sing
Y
443
N
sing
N
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
UK
Structure
STRUE6
2005
0969-2126
5
1681
1693
10.1016/S0969-2126(97)00314-6
9438869
New insights into the regulation of the blood clotting cascade derived from the X-ray crystal structure of bovine meizothrombin des F1 in complex with PPACK.
1997
10.2210/pdb1a0h/pdb
pdb_00001a0h
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
273
1
0.3 MM COLLIMATOR
AREA DETECTOR
1996-03
SIEMENS
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
17868.338
MEIZOTHROMBIN
3.4.21.5
F2/THROMBIN DOMAIN
2
nat
polymer
29772.422
MEIZOTHROMBIN
3.4.21.5
F2/THROMBIN DOMAIN
2
nat
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
branched
453.986
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
2
syn
non-polymer
18.015
water
87
nat
water
DESF1
DESF1
PPACK
no
no
SPLLETCVPDRGREYRGRLAVTTHGSRCLAWSSEQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYC
DLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR
SPLLETCVPDRGREYRGRLAVTTHGSRCLAWSSEQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYC
DLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR
A,D
polypeptide(L)
no
no
IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISM
LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVL
QVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDRLGS
IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISM
LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVL
QVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDRLGS
B,E
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
sample
9913
BLOOD
Bos taurus
BLOOD PLASMA
cattle
Bos
sample
9913
BLOOD
Bos taurus
BLOOD PLASMA
1
5.4
76.
8.0
17 MG/ML PROTEIN, 2% PEG4000, .25 M AMMONIUM PHOSPHATE, PH 8.0, 33% SATURATED AMMONIUM SULFATE
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_special_symmetry
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Atomic model
Other
Atomic model
Data collection
Database references
Derived calculations
Other
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
1998-06-17
1
1
2008-03-24
1
2
2011-07-13
1
3
2011-11-16
1
4
2013-02-27
2
0
2020-07-29
2
1
2024-04-03
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.src_method
_entity.type
_entity_name_com.entity_id
_pdbx_database_status.process_site
_pdbx_molecule.asym_id
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_special_symmetry.label_asym_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
B
NAG
584
n
C
NAG
1
B
NAG
585
n
C
NAG
2
E
NAG
584
n
F
NAG
1
E
NAG
585
n
F
NAG
2
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Y
BNL
1997-11-30
REL
REL
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
n
n
0G6
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
HOH
water
THE UNBOUND FORM OF THE INHIBITOR IS D-PHE-PRO-ARG-CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO COVALENT BONDS: 1) A COVALENT BOND TO SER525 (CHAINS B,E) FORMING A HEMIKETAL AR7 AND 2) A COVALENT BOND TO NE2 OF HIS363 (CHAINS B,E)
Thrombin
Other
experimental model
Inhibitor
D-Phe-Pro-Arg-CH2Cl
Peptide-like
DPN
1
4
0G6
0G6
1
B
DPN
1
4
0G6
0G6
1
E
HOH
1
5
HOH
HOH
1
A
HOH
3
5
HOH
HOH
3
A
HOH
4
5
HOH
HOH
4
A
HOH
5
5
HOH
HOH
5
A
HOH
6
5
HOH
HOH
6
A
HOH
7
5
HOH
HOH
7
A
HOH
9
5
HOH
HOH
9
A
HOH
11
5
HOH
HOH
11
A
HOH
12
5
HOH
HOH
12
A
HOH
13
5
HOH
HOH
13
A
HOH
14
5
HOH
HOH
14
A
HOH
15
5
HOH
HOH
15
A
HOH
16
5
HOH
HOH
16
A
HOH
18
5
HOH
HOH
18
A
HOH
24
5
HOH
HOH
24
A
HOH
25
5
HOH
HOH
25
A
HOH
27
5
HOH
HOH
27
A
HOH
31
5
HOH
HOH
31
A
HOH
38
5
HOH
HOH
38
A
HOH
41
5
HOH
HOH
41
A
HOH
42
5
HOH
HOH
42
A
HOH
43
5
HOH
HOH
43
A
HOH
49
5
HOH
HOH
49
A
HOH
51
5
HOH
HOH
51
A
HOH
55
5
HOH
HOH
55
A
HOH
10
5
HOH
HOH
10
B
HOH
17
5
HOH
HOH
17
B
HOH
19
5
HOH
HOH
19
B
HOH
21
5
HOH
HOH
21
B
HOH
23
5
HOH
HOH
23
B
HOH
33
5
HOH
HOH
33
B
HOH
34
5
HOH
HOH
34
B
HOH
35
5
HOH
HOH
35
B
HOH
36
5
HOH
HOH
36
B
HOH
37
5
HOH
HOH
37
B
HOH
39
5
HOH
HOH
39
B
HOH
45
5
HOH
HOH
45
B
HOH
47
5
HOH
HOH
47
B
HOH
52
5
HOH
HOH
52
B
HOH
54
5
HOH
HOH
54
B
HOH
56
5
HOH
HOH
56
B
HOH
57
5
HOH
HOH
57
B
HOH
60
5
HOH
HOH
60
B
HOH
63
5
HOH
HOH
63
B
HOH
64
5
HOH
HOH
64
B
HOH
68
5
HOH
HOH
68
B
HOH
78
5
HOH
HOH
78
B
HOH
87
5
HOH
HOH
87
B
HOH
46
5
HOH
HOH
46
D
HOH
61
5
HOH
HOH
61
D
HOH
62
5
HOH
HOH
62
D
HOH
65
5
HOH
HOH
65
D
HOH
66
5
HOH
HOH
66
D
HOH
69
5
HOH
HOH
69
D
HOH
70
5
HOH
HOH
70
D
HOH
71
5
HOH
HOH
71
D
HOH
72
5
HOH
HOH
72
D
HOH
73
5
HOH
HOH
73
D
HOH
74
5
HOH
HOH
74
D
HOH
76
5
HOH
HOH
76
D
HOH
79
5
HOH
HOH
79
D
HOH
81
5
HOH
HOH
81
D
HOH
83
5
HOH
HOH
83
D
HOH
84
5
HOH
HOH
84
D
HOH
2
5
HOH
HOH
2
E
HOH
8
5
HOH
HOH
8
E
HOH
20
5
HOH
HOH
20
E
HOH
22
5
HOH
HOH
22
E
HOH
26
5
HOH
HOH
26
E
HOH
28
5
HOH
HOH
28
E
HOH
29
5
HOH
HOH
29
E
HOH
30
5
HOH
HOH
30
E
HOH
32
5
HOH
HOH
32
E
HOH
40
5
HOH
HOH
40
E
HOH
44
5
HOH
HOH
44
E
HOH
48
5
HOH
HOH
48
E
HOH
50
5
HOH
HOH
50
E
HOH
53
5
HOH
HOH
53
E
HOH
58
5
HOH
HOH
58
E
HOH
59
5
HOH
HOH
59
E
HOH
67
5
HOH
HOH
67
E
HOH
75
5
HOH
HOH
75
E
HOH
77
5
HOH
HOH
77
E
HOH
80
5
HOH
HOH
80
E
HOH
82
5
HOH
HOH
82
E
HOH
85
5
HOH
HOH
85
E
HOH
86
5
HOH
HOH
86
E
SER
164
n
1
SER
164
A
PRO
165
n
2
PRO
165
A
LEU
166
n
3
LEU
166
A
LEU
167
n
4
LEU
167
A
GLU
168
n
5
GLU
168
A
THR
169
n
6
THR
169
A
CYS
170
n
7
CYS
170
A
VAL
171
n
8
VAL
171
A
PRO
172
n
9
PRO
172
A
ASP
173
n
10
ASP
173
A
ARG
174
n
11
ARG
174
A
GLY
175
n
12
GLY
175
A
ARG
176
n
13
ARG
176
A
GLU
177
n
14
GLU
177
A
TYR
178
n
15
TYR
178
A
ARG
179
n
16
ARG
179
A
GLY
180
n
17
GLY
180
A
ARG
181
n
18
ARG
181
A
LEU
182
n
19
LEU
182
A
ALA
183
n
20
ALA
183
A
VAL
184
n
21
VAL
184
A
THR
185
n
22
THR
185
A
THR
186
n
23
THR
186
A
HIS
187
n
24
HIS
187
A
GLY
188
n
25
GLY
188
A
SER
189
n
26
SER
189
A
ARG
190
n
27
ARG
190
A
CYS
191
n
28
CYS
191
A
LEU
192
n
29
LEU
192
A
ALA
193
n
30
ALA
193
A
TRP
194
n
31
TRP
194
A
SER
195
n
32
SER
195
A
SER
196
n
33
SER
196
A
GLU
197
n
34
GLU
197
A
GLN
198
n
35
GLN
198
A
ALA
199
n
36
ALA
199
A
LYS
200
n
37
LYS
200
A
ALA
201
n
38
ALA
201
A
LEU
202
n
39
LEU
202
A
SER
203
n
40
SER
203
A
LYS
204
n
41
LYS
204
A
ASP
205
n
42
ASP
205
A
GLN
206
n
43
GLN
206
A
ASP
207
n
44
ASP
207
A
PHE
208
n
45
PHE
208
A
ASN
209
n
46
ASN
209
A
PRO
210
n
47
PRO
210
A
ALA
211
n
48
ALA
211
A
VAL
212
n
49
VAL
212
A
PRO
213
n
50
PRO
213
A
LEU
214
n
51
LEU
214
A
ALA
215
n
52
ALA
215
A
GLU
216
n
53
GLU
216
A
ASN
217
n
54
ASN
217
A
PHE
218
n
55
PHE
218
A
CYS
219
n
56
CYS
219
A
ARG
220
n
57
ARG
220
A
ASN
221
n
58
ASN
221
A
PRO
222
n
59
PRO
222
A
ASP
223
n
60
ASP
223
A
GLY
224
n
61
GLY
224
A
ASP
225
n
62
ASP
225
A
GLU
226
n
63
GLU
226
A
GLU
227
n
64
GLU
227
A
GLY
228
n
65
GLY
228
A
ALA
229
n
66
ALA
229
A
TRP
230
n
67
TRP
230
A
CYS
231
n
68
CYS
231
A
TYR
232
n
69
TYR
232
A
VAL
233
n
70
VAL
233
A
ALA
234
n
71
ALA
234
A
ASP
235
n
72
ASP
235
A
GLN
236
n
73
GLN
236
A
PRO
237
n
74
PRO
237
A
GLY
238
n
75
GLY
238
A
ASP
239
n
76
ASP
239
A
PHE
240
n
77
PHE
240
A
GLU
241
n
78
GLU
241
A
TYR
242
n
79
TYR
242
A
CYS
243
n
80
CYS
243
A
ASP
244
n
81
ASP
244
A
LEU
245
n
82
LEU
245
A
ASN
246
n
83
ASN
246
A
TYR
247
n
84
TYR
247
A
CYS
248
n
85
CYS
248
A
GLU
249
n
86
GLU
249
A
GLU
250
n
87
GLU
250
A
PRO
251
n
88
PRO
251
A
VAL
252
n
89
VAL
252
A
ASP
253
n
90
ASP
253
A
GLY
254
n
91
GLY
254
A
ASP
255
n
92
ASP
255
A
LEU
256
n
93
LEU
256
A
GLY
257
n
94
GLY
257
A
ASP
258
n
95
ASP
258
A
ARG
259
n
96
ARG
259
A
LEU
260
n
97
LEU
260
A
GLY
261
n
98
GLY
261
A
GLU
262
n
99
GLU
262
A
ASP
263
n
100
ASP
263
A
PRO
264
n
101
PRO
264
A
ASP
264
n
102
A
ASP
264
A
PRO
264
n
103
B
PRO
264
A
ASP
265
n
104
ASP
265
A
ALA
266
n
105
ALA
266
A
ALA
267
n
106
ALA
267
A
ILE
268
n
107
ILE
268
A
GLU
269
n
108
GLU
269
A
GLY
270
n
109
GLY
270
A
ARG
271
n
110
ARG
271
A
THR
272
n
111
THR
272
A
SER
273
n
112
SER
273
A
GLU
274
n
113
GLU
274
A
ASP
275
n
114
ASP
275
A
HIS
276
n
115
HIS
276
A
PHE
277
n
116
PHE
277
A
GLN
278
n
117
GLN
278
A
PRO
279
n
118
PRO
279
A
PHE
280
n
119
PHE
280
A
PHE
281
n
120
PHE
281
A
ASN
282
n
121
ASN
282
A
GLU
283
n
122
GLU
283
A
LYS
284
n
123
LYS
284
A
THR
285
n
124
THR
285
A
PHE
286
n
125
PHE
286
A
GLY
287
n
126
GLY
287
A
ALA
288
n
127
ALA
288
A
GLY
289
n
128
GLY
289
A
GLU
290
n
129
GLU
290
A
ALA
291
n
130
ALA
291
A
ASP
292
n
131
ASP
292
A
CYS
293
n
132
CYS
293
A
GLY
294
n
133
GLY
294
A
LEU
295
n
134
LEU
295
A
ARG
296
n
135
ARG
296
A
PRO
297
n
136
PRO
297
A
LEU
298
n
137
LEU
298
A
PHE
299
n
138
PHE
299
A
GLU
300
n
139
GLU
300
A
LYS
301
n
140
LYS
301
A
LYS
302
n
141
LYS
302
A
GLN
303
n
142
GLN
303
A
VAL
304
n
143
VAL
304
A
GLN
305
n
144
GLN
305
A
ASP
306
n
145
ASP
306
A
GLN
307
n
146
GLN
307
A
THR
308
n
147
THR
308
A
GLU
309
n
148
GLU
309
A
LYS
310
n
149
LYS
310
A
GLU
311
n
150
GLU
311
A
LEU
312
n
151
LEU
312
A
PHE
313
n
152
PHE
313
A
GLU
314
n
153
GLU
314
A
SER
315
n
154
SER
315
A
TYR
316
n
155
TYR
316
A
ILE
317
n
156
ILE
317
A
GLU
318
n
157
GLU
318
A
GLY
319
n
158
GLY
319
A
ARG
320
n
159
ARG
320
A
ILE
321
n
1
ILE
321
B
VAL
322
n
2
VAL
322
B
GLU
323
n
3
GLU
323
B
GLY
324
n
4
GLY
324
B
GLN
325
n
5
GLN
325
B
ASP
326
n
6
ASP
326
B
ALA
327
n
7
ALA
327
B
GLU
328
n
8
GLU
328
B
VAL
329
n
9
VAL
329
B
GLY
330
n
10
GLY
330
B
LEU
331
n
11
LEU
331
B
SER
332
n
12
SER
332
B
PRO
333
n
13
PRO
333
B
TRP
334
n
14
TRP
334
B
GLN
335
n
15
GLN
335
B
VAL
336
n
16
VAL
336
B
MET
337
n
17
MET
337
B
LEU
338
n
18
LEU
338
B
PHE
339
n
19
PHE
339
B
ARG
340
n
20
ARG
340
B
LYS
341
n
21
LYS
341
B
SER
342
n
22
SER
342
B
PRO
343
n
23
PRO
343
B
GLN
344
n
24
GLN
344
B
GLU
345
n
25
GLU
345
B
LEU
346
n
26
LEU
346
B
LEU
347
n
27
LEU
347
B
CYS
348
n
28
CYS
348
B
GLY
349
n
29
GLY
349
B
ALA
350
n
30
ALA
350
B
SER
351
n
31
SER
351
B
LEU
352
n
32
LEU
352
B
ILE
353
n
33
ILE
353
B
SER
354
n
34
SER
354
B
ASP
355
n
35
ASP
355
B
ARG
356
n
36
ARG
356
B
TRP
357
n
37
TRP
357
B
VAL
358
n
38
VAL
358
B
LEU
359
n
39
LEU
359
B
THR
360
n
40
THR
360
B
ALA
361
n
41
ALA
361
B
ALA
362
n
42
ALA
362
B
HIS
363
n
43
HIS
363
B
CYS
364
n
44
CYS
364
B
LEU
365
n
45
LEU
365
B
LEU
366
n
46
LEU
366
B
TYR
367
n
47
TYR
367
B
PRO
368
n
48
PRO
368
B
PRO
369
n
49
PRO
369
B
TRP
370
n
50
TRP
370
B
ASP
371
n
51
ASP
371
B
LYS
372
n
52
LYS
372
B
ASN
373
n
53
ASN
373
B
PHE
374
n
54
PHE
374
B
THR
375
n
55
THR
375
B
VAL
376
n
56
VAL
376
B
ASP
377
n
57
ASP
377
B
ASP
378
n
58
ASP
378
B
LEU
379
n
59
LEU
379
B
LEU
380
n
60
LEU
380
B
VAL
381
n
61
VAL
381
B
ARG
382
n
62
ARG
382
B
ILE
383
n
63
ILE
383
B
GLY
384
n
64
GLY
384
B
LYS
385
n
65
LYS
385
B
HIS
386
n
66
HIS
386
B
SER
387
n
67
SER
387
B
ARG
388
n
68
ARG
388
B
THR
389
n
69
THR
389
B
ARG
390
n
70
ARG
390
B
TYR
391
n
71
TYR
391
B
GLU
392
n
72
GLU
392
B
ARG
393
n
73
ARG
393
B
LYS
394
n
74
LYS
394
B
VAL
395
n
75
VAL
395
B
GLU
396
n
76
GLU
396
B
LYS
397
n
77
LYS
397
B
ILE
398
n
78
ILE
398
B
SER
399
n
79
SER
399
B
MET
400
n
80
MET
400
B
LEU
401
n
81
LEU
401
B
ASP
402
n
82
ASP
402
B
LYS
403
n
83
LYS
403
B
ILE
404
n
84
ILE
404
B
TYR
405
n
85
TYR
405
B
ILE
406
n
86
ILE
406
B
HIS
407
n
87
HIS
407
B
PRO
408
n
88
PRO
408
B
ARG
409
n
89
ARG
409
B
TYR
410
n
90
TYR
410
B
ASN
411
n
91
ASN
411
B
TRP
412
n
92
TRP
412
B
LYS
413
n
93
LYS
413
B
GLU
414
n
94
GLU
414
B
ASN
415
n
95
ASN
415
B
LEU
416
n
96
LEU
416
B
ASP
417
n
97
ASP
417
B
ARG
418
n
98
ARG
418
B
ASP
419
n
99
ASP
419
B
ILE
420
n
100
ILE
420
B
ALA
421
n
101
ALA
421
B
LEU
422
n
102
LEU
422
B
LEU
423
n
103
LEU
423
B
LYS
424
n
104
LYS
424
B
LEU
425
n
105
LEU
425
B
LYS
426
n
106
LYS
426
B
ARG
427
n
107
ARG
427
B
PRO
428
n
108
PRO
428
B
ILE
429
n
109
ILE
429
B
GLU
430
n
110
GLU
430
B
LEU
431
n
111
LEU
431
B
SER
432
n
112
SER
432
B
ASP
433
n
113
ASP
433
B
TYR
434
n
114
TYR
434
B
ILE
435
n
115
ILE
435
B
HIS
436
n
116
HIS
436
B
PRO
437
n
117
PRO
437
B
VAL
438
n
118
VAL
438
B
CYS
439
n
119
CYS
439
B
LEU
440
n
120
LEU
440
B
PRO
441
n
121
PRO
441
B
ASP
442
n
122
ASP
442
B
LYS
443
n
123
LYS
443
B
GLN
444
n
124
GLN
444
B
THR
445
n
125
THR
445
B
ALA
446
n
126
ALA
446
B
ALA
447
n
127
ALA
447
B
LYS
448
n
128
LYS
448
B
LEU
449
n
129
LEU
449
B
LEU
450
n
130
LEU
450
B
HIS
451
n
131
HIS
451
B
ALA
452
n
132
ALA
452
B
GLY
453
n
133
GLY
453
B
PHE
454
n
134
PHE
454
B
LYS
455
n
135
LYS
455
B
GLY
456
n
136
GLY
456
B
ARG
457
n
137
ARG
457
B
VAL
458
n
138
VAL
458
B
THR
459
n
139
THR
459
B
GLY
460
n
140
GLY
460
B
TRP
461
n
141
TRP
461
B
GLY
462
n
142
GLY
462
B
ASN
463
n
143
ASN
463
B
ARG
464
n
144
ARG
464
B
ARG
465
n
145
ARG
465
B
GLU
466
n
146
GLU
466
B
THR
467
n
147
THR
467
B
TRP
468
n
148
TRP
468
B
THR
469
n
149
THR
469
B
THR
470
n
150
THR
470
B
SER
471
n
151
SER
471
B
VAL
472
n
152
VAL
472
B
ALA
473
n
153
ALA
473
B
GLU
474
n
154
GLU
474
B
VAL
475
n
155
VAL
475
B
GLN
476
n
156
GLN
476
B
PRO
477
n
157
PRO
477
B
SER
478
n
158
SER
478
B
VAL
479
n
159
VAL
479
B
LEU
480
n
160
LEU
480
B
GLN
481
n
161
GLN
481
B
VAL
482
n
162
VAL
482
B
VAL
483
n
163
VAL
483
B
ASN
484
n
164
ASN
484
B
LEU
485
n
165
LEU
485
B
PRO
486
n
166
PRO
486
B
LEU
487
n
167
LEU
487
B
VAL
488
n
168
VAL
488
B
GLU
489
n
169
GLU
489
B
ARG
490
n
170
ARG
490
B
PRO
491
n
171
PRO
491
B
VAL
492
n
172
VAL
492
B
CYS
493
n
173
CYS
493
B
LYS
494
n
174
LYS
494
B
ALA
495
n
175
ALA
495
B
SER
496
n
176
SER
496
B
THR
497
n
177
THR
497
B
ARG
498
n
178
ARG
498
B
ILE
499
n
179
ILE
499
B
ARG
500
n
180
ARG
500
B
ILE
501
n
181
ILE
501
B
THR
502
n
182
THR
502
B
ASP
503
n
183
ASP
503
B
ASN
504
n
184
ASN
504
B
MET
505
n
185
MET
505
B
PHE
506
n
186
PHE
506
B
CYS
507
n
187
CYS
507
B
ALA
508
n
188
ALA
508
B
GLY
509
n
189
GLY
509
B
TYR
510
n
190
TYR
510
B
LYS
511
n
191
LYS
511
B
PRO
512
n
192
PRO
512
B
GLY
513
n
193
GLY
513
B
GLU
514
n
194
GLU
514
B
GLY
515
n
195
GLY
515
B
LYS
516
n
196
LYS
516
B
ARG
517
n
197
ARG
517
B
GLY
518
n
198
GLY
518
B
ASP
519
n
199
ASP
519
B
ALA
520
n
200
ALA
520
B
CYS
521
n
201
CYS
521
B
GLU
522
n
202
GLU
522
B
GLY
523
n
203
GLY
523
B
ASP
524
n
204
ASP
524
B
SER
525
n
205
SER
525
B
GLY
526
n
206
GLY
526
B
GLY
527
n
207
GLY
527
B
PRO
528
n
208
PRO
528
B
PHE
529
n
209
PHE
529
B
VAL
530
n
210
VAL
530
B
MET
531
n
211
MET
531
B
LYS
532
n
212
LYS
532
B
SER
533
n
213
SER
533
B
PRO
534
n
214
PRO
534
B
TYR
535
n
215
TYR
535
B
ASN
536
n
216
ASN
536
B
ASN
537
n
217
ASN
537
B
ARG
538
n
218
ARG
538
B
TRP
539
n
219
TRP
539
B
TYR
540
n
220
TYR
540
B
GLN
541
n
221
GLN
541
B
MET
542
n
222
MET
542
B
GLY
543
n
223
GLY
543
B
ILE
544
n
224
ILE
544
B
VAL
545
n
225
VAL
545
B
SER
546
n
226
SER
546
B
TRP
547
n
227
TRP
547
B
GLY
548
n
228
GLY
548
B
GLU
549
n
229
GLU
549
B
GLY
550
n
230
GLY
550
B
CYS
551
n
231
CYS
551
B
ASP
552
n
232
ASP
552
B
ARG
553
n
233
ARG
553
B
ASP
554
n
234
ASP
554
B
GLY
555
n
235
GLY
555
B
LYS
556
n
236
LYS
556
B
TYR
557
n
237
TYR
557
B
GLY
558
n
238
GLY
558
B
PHE
559
n
239
PHE
559
B
TYR
560
n
240
TYR
560
B
THR
561
n
241
THR
561
B
HIS
562
n
242
HIS
562
B
VAL
563
n
243
VAL
563
B
PHE
564
n
244
PHE
564
B
ARG
565
n
245
ARG
565
B
LEU
566
n
246
LEU
566
B
LYS
567
n
247
LYS
567
B
LYS
568
n
248
LYS
568
B
TRP
569
n
249
TRP
569
B
ILE
570
n
250
ILE
570
B
GLN
571
n
251
GLN
571
B
LYS
572
n
252
LYS
572
B
VAL
573
n
253
VAL
573
B
ILE
574
n
254
ILE
574
B
ASP
575
n
255
ASP
575
B
ARG
576
n
256
ARG
576
B
LEU
577
n
257
LEU
577
B
GLY
578
n
258
GLY
578
B
SER
579
n
259
SER
579
B
SER
164
n
1
SER
164
D
PRO
165
n
2
PRO
165
D
LEU
166
n
3
LEU
166
D
LEU
167
n
4
LEU
167
D
GLU
168
n
5
GLU
168
D
THR
169
n
6
THR
169
D
CYS
170
n
7
CYS
170
D
VAL
171
n
8
VAL
171
D
PRO
172
n
9
PRO
172
D
ASP
173
n
10
ASP
173
D
ARG
174
n
11
ARG
174
D
GLY
175
n
12
GLY
175
D
ARG
176
n
13
ARG
176
D
GLU
177
n
14
GLU
177
D
TYR
178
n
15
TYR
178
D
ARG
179
n
16
ARG
179
D
GLY
180
n
17
GLY
180
D
ARG
181
n
18
ARG
181
D
LEU
182
n
19
LEU
182
D
ALA
183
n
20
ALA
183
D
VAL
184
n
21
VAL
184
D
THR
185
n
22
THR
185
D
THR
186
n
23
THR
186
D
HIS
187
n
24
HIS
187
D
GLY
188
n
25
GLY
188
D
SER
189
n
26
SER
189
D
ARG
190
n
27
ARG
190
D
CYS
191
n
28
CYS
191
D
LEU
192
n
29
LEU
192
D
ALA
193
n
30
ALA
193
D
TRP
194
n
31
TRP
194
D
SER
195
n
32
SER
195
D
SER
196
n
33
SER
196
D
GLU
197
n
34
GLU
197
D
GLN
198
n
35
GLN
198
D
ALA
199
n
36
ALA
199
D
LYS
200
n
37
LYS
200
D
ALA
201
n
38
ALA
201
D
LEU
202
n
39
LEU
202
D
SER
203
n
40
SER
203
D
LYS
204
n
41
LYS
204
D
ASP
205
n
42
ASP
205
D
GLN
206
n
43
GLN
206
D
ASP
207
n
44
ASP
207
D
PHE
208
n
45
PHE
208
D
ASN
209
n
46
ASN
209
D
PRO
210
n
47
PRO
210
D
ALA
211
n
48
ALA
211
D
VAL
212
n
49
VAL
212
D
PRO
213
n
50
PRO
213
D
LEU
214
n
51
LEU
214
D
ALA
215
n
52
ALA
215
D
GLU
216
n
53
GLU
216
D
ASN
217
n
54
ASN
217
D
PHE
218
n
55
PHE
218
D
CYS
219
n
56
CYS
219
D
ARG
220
n
57
ARG
220
D
ASN
221
n
58
ASN
221
D
PRO
222
n
59
PRO
222
D
ASP
223
n
60
ASP
223
D
GLY
224
n
61
GLY
224
D
ASP
225
n
62
ASP
225
D
GLU
226
n
63
GLU
226
D
GLU
227
n
64
GLU
227
D
GLY
228
n
65
GLY
228
D
ALA
229
n
66
ALA
229
D
TRP
230
n
67
TRP
230
D
CYS
231
n
68
CYS
231
D
TYR
232
n
69
TYR
232
D
VAL
233
n
70
VAL
233
D
ALA
234
n
71
ALA
234
D
ASP
235
n
72
ASP
235
D
GLN
236
n
73
GLN
236
D
PRO
237
n
74
PRO
237
D
GLY
238
n
75
GLY
238
D
ASP
239
n
76
ASP
239
D
PHE
240
n
77
PHE
240
D
GLU
241
n
78
GLU
241
D
TYR
242
n
79
TYR
242
D
CYS
243
n
80
CYS
243
D
ASP
244
n
81
ASP
244
D
LEU
245
n
82
LEU
245
D
ASN
246
n
83
ASN
246
D
TYR
247
n
84
TYR
247
D
CYS
248
n
85
CYS
248
D
GLU
249
n
86
GLU
249
D
GLU
250
n
87
GLU
250
D
PRO
251
n
88
PRO
251
D
VAL
252
n
89
VAL
252
D
ASP
253
n
90
ASP
253
D
GLY
254
n
91
GLY
254
D
ASP
255
n
92
ASP
255
D
LEU
256
n
93
LEU
256
D
GLY
257
n
94
GLY
257
D
ASP
258
n
95
ASP
258
D
ARG
259
n
96
ARG
259
D
LEU
260
n
97
LEU
260
D
GLY
261
n
98
GLY
261
D
GLU
262
n
99
GLU
262
D
ASP
263
n
100
ASP
263
D
PRO
264
n
101
PRO
264
D
ASP
264
n
102
A
ASP
264
D
PRO
264
n
103
B
PRO
264
D
ASP
265
n
104
ASP
265
D
ALA
266
n
105
ALA
266
D
ALA
267
n
106
ALA
267
D
ILE
268
n
107
ILE
268
D
GLU
269
n
108
GLU
269
D
GLY
270
n
109
GLY
270
D
ARG
271
n
110
ARG
271
D
THR
272
n
111
THR
272
D
SER
273
n
112
SER
273
D
GLU
274
n
113
GLU
274
D
ASP
275
n
114
ASP
275
D
HIS
276
n
115
HIS
276
D
PHE
277
n
116
PHE
277
D
GLN
278
n
117
GLN
278
D
PRO
279
n
118
PRO
279
D
PHE
280
n
119
PHE
280
D
PHE
281
n
120
PHE
281
D
ASN
282
n
121
ASN
282
D
GLU
283
n
122
GLU
283
D
LYS
284
n
123
LYS
284
D
THR
285
n
124
THR
285
D
PHE
286
n
125
PHE
286
D
GLY
287
n
126
GLY
287
D
ALA
288
n
127
ALA
288
D
GLY
289
n
128
GLY
289
D
GLU
290
n
129
GLU
290
D
ALA
291
n
130
ALA
291
D
ASP
292
n
131
ASP
292
D
CYS
293
n
132
CYS
293
D
GLY
294
n
133
GLY
294
D
LEU
295
n
134
LEU
295
D
ARG
296
n
135
ARG
296
D
PRO
297
n
136
PRO
297
D
LEU
298
n
137
LEU
298
D
PHE
299
n
138
PHE
299
D
GLU
300
n
139
GLU
300
D
LYS
301
n
140
LYS
301
D
LYS
302
n
141
LYS
302
D
GLN
303
n
142
GLN
303
D
VAL
304
n
143
VAL
304
D
GLN
305
n
144
GLN
305
D
ASP
306
n
145
ASP
306
D
GLN
307
n
146
GLN
307
D
THR
308
n
147
THR
308
D
GLU
309
n
148
GLU
309
D
LYS
310
n
149
LYS
310
D
GLU
311
n
150
GLU
311
D
LEU
312
n
151
LEU
312
D
PHE
313
n
152
PHE
313
D
GLU
314
n
153
GLU
314
D
SER
315
n
154
SER
315
D
TYR
316
n
155
TYR
316
D
ILE
317
n
156
ILE
317
D
GLU
318
n
157
GLU
318
D
GLY
319
n
158
GLY
319
D
ARG
320
n
159
ARG
320
D
ILE
321
n
1
ILE
321
E
VAL
322
n
2
VAL
322
E
GLU
323
n
3
GLU
323
E
GLY
324
n
4
GLY
324
E
GLN
325
n
5
GLN
325
E
ASP
326
n
6
ASP
326
E
ALA
327
n
7
ALA
327
E
GLU
328
n
8
GLU
328
E
VAL
329
n
9
VAL
329
E
GLY
330
n
10
GLY
330
E
LEU
331
n
11
LEU
331
E
SER
332
n
12
SER
332
E
PRO
333
n
13
PRO
333
E
TRP
334
n
14
TRP
334
E
GLN
335
n
15
GLN
335
E
VAL
336
n
16
VAL
336
E
MET
337
n
17
MET
337
E
LEU
338
n
18
LEU
338
E
PHE
339
n
19
PHE
339
E
ARG
340
n
20
ARG
340
E
LYS
341
n
21
LYS
341
E
SER
342
n
22
SER
342
E
PRO
343
n
23
PRO
343
E
GLN
344
n
24
GLN
344
E
GLU
345
n
25
GLU
345
E
LEU
346
n
26
LEU
346
E
LEU
347
n
27
LEU
347
E
CYS
348
n
28
CYS
348
E
GLY
349
n
29
GLY
349
E
ALA
350
n
30
ALA
350
E
SER
351
n
31
SER
351
E
LEU
352
n
32
LEU
352
E
ILE
353
n
33
ILE
353
E
SER
354
n
34
SER
354
E
ASP
355
n
35
ASP
355
E
ARG
356
n
36
ARG
356
E
TRP
357
n
37
TRP
357
E
VAL
358
n
38
VAL
358
E
LEU
359
n
39
LEU
359
E
THR
360
n
40
THR
360
E
ALA
361
n
41
ALA
361
E
ALA
362
n
42
ALA
362
E
HIS
363
n
43
HIS
363
E
CYS
364
n
44
CYS
364
E
LEU
365
n
45
LEU
365
E
LEU
366
n
46
LEU
366
E
TYR
367
n
47
TYR
367
E
PRO
368
n
48
PRO
368
E
PRO
369
n
49
PRO
369
E
TRP
370
n
50
TRP
370
E
ASP
371
n
51
ASP
371
E
LYS
372
n
52
LYS
372
E
ASN
373
n
53
ASN
373
E
PHE
374
n
54
PHE
374
E
THR
375
n
55
THR
375
E
VAL
376
n
56
VAL
376
E
ASP
377
n
57
ASP
377
E
ASP
378
n
58
ASP
378
E
LEU
379
n
59
LEU
379
E
LEU
380
n
60
LEU
380
E
VAL
381
n
61
VAL
381
E
ARG
382
n
62
ARG
382
E
ILE
383
n
63
ILE
383
E
GLY
384
n
64
GLY
384
E
LYS
385
n
65
LYS
385
E
HIS
386
n
66
HIS
386
E
SER
387
n
67
SER
387
E
ARG
388
n
68
ARG
388
E
THR
389
n
69
THR
389
E
ARG
390
n
70
ARG
390
E
TYR
391
n
71
TYR
391
E
GLU
392
n
72
GLU
392
E
ARG
393
n
73
ARG
393
E
LYS
394
n
74
LYS
394
E
VAL
395
n
75
VAL
395
E
GLU
396
n
76
GLU
396
E
LYS
397
n
77
LYS
397
E
ILE
398
n
78
ILE
398
E
SER
399
n
79
SER
399
E
MET
400
n
80
MET
400
E
LEU
401
n
81
LEU
401
E
ASP
402
n
82
ASP
402
E
LYS
403
n
83
LYS
403
E
ILE
404
n
84
ILE
404
E
TYR
405
n
85
TYR
405
E
ILE
406
n
86
ILE
406
E
HIS
407
n
87
HIS
407
E
PRO
408
n
88
PRO
408
E
ARG
409
n
89
ARG
409
E
TYR
410
n
90
TYR
410
E
ASN
411
n
91
ASN
411
E
TRP
412
n
92
TRP
412
E
LYS
413
n
93
LYS
413
E
GLU
414
n
94
GLU
414
E
ASN
415
n
95
ASN
415
E
LEU
416
n
96
LEU
416
E
ASP
417
n
97
ASP
417
E
ARG
418
n
98
ARG
418
E
ASP
419
n
99
ASP
419
E
ILE
420
n
100
ILE
420
E
ALA
421
n
101
ALA
421
E
LEU
422
n
102
LEU
422
E
LEU
423
n
103
LEU
423
E
LYS
424
n
104
LYS
424
E
LEU
425
n
105
LEU
425
E
LYS
426
n
106
LYS
426
E
ARG
427
n
107
ARG
427
E
PRO
428
n
108
PRO
428
E
ILE
429
n
109
ILE
429
E
GLU
430
n
110
GLU
430
E
LEU
431
n
111
LEU
431
E
SER
432
n
112
SER
432
E
ASP
433
n
113
ASP
433
E
TYR
434
n
114
TYR
434
E
ILE
435
n
115
ILE
435
E
HIS
436
n
116
HIS
436
E
PRO
437
n
117
PRO
437
E
VAL
438
n
118
VAL
438
E
CYS
439
n
119
CYS
439
E
LEU
440
n
120
LEU
440
E
PRO
441
n
121
PRO
441
E
ASP
442
n
122
ASP
442
E
LYS
443
n
123
LYS
443
E
GLN
444
n
124
GLN
444
E
THR
445
n
125
THR
445
E
ALA
446
n
126
ALA
446
E
ALA
447
n
127
ALA
447
E
LYS
448
n
128
LYS
448
E
LEU
449
n
129
LEU
449
E
LEU
450
n
130
LEU
450
E
HIS
451
n
131
HIS
451
E
ALA
452
n
132
ALA
452
E
GLY
453
n
133
GLY
453
E
PHE
454
n
134
PHE
454
E
LYS
455
n
135
LYS
455
E
GLY
456
n
136
GLY
456
E
ARG
457
n
137
ARG
457
E
VAL
458
n
138
VAL
458
E
THR
459
n
139
THR
459
E
GLY
460
n
140
GLY
460
E
TRP
461
n
141
TRP
461
E
GLY
462
n
142
GLY
462
E
ASN
463
n
143
ASN
463
E
ARG
464
n
144
ARG
464
E
ARG
465
n
145
ARG
465
E
GLU
466
n
146
GLU
466
E
THR
467
n
147
THR
467
E
TRP
468
n
148
TRP
468
E
THR
469
n
149
THR
469
E
THR
470
n
150
THR
470
E
SER
471
n
151
SER
471
E
VAL
472
n
152
VAL
472
E
ALA
473
n
153
ALA
473
E
GLU
474
n
154
GLU
474
E
VAL
475
n
155
VAL
475
E
GLN
476
n
156
GLN
476
E
PRO
477
n
157
PRO
477
E
SER
478
n
158
SER
478
E
VAL
479
n
159
VAL
479
E
LEU
480
n
160
LEU
480
E
GLN
481
n
161
GLN
481
E
VAL
482
n
162
VAL
482
E
VAL
483
n
163
VAL
483
E
ASN
484
n
164
ASN
484
E
LEU
485
n
165
LEU
485
E
PRO
486
n
166
PRO
486
E
LEU
487
n
167
LEU
487
E
VAL
488
n
168
VAL
488
E
GLU
489
n
169
GLU
489
E
ARG
490
n
170
ARG
490
E
PRO
491
n
171
PRO
491
E
VAL
492
n
172
VAL
492
E
CYS
493
n
173
CYS
493
E
LYS
494
n
174
LYS
494
E
ALA
495
n
175
ALA
495
E
SER
496
n
176
SER
496
E
THR
497
n
177
THR
497
E
ARG
498
n
178
ARG
498
E
ILE
499
n
179
ILE
499
E
ARG
500
n
180
ARG
500
E
ILE
501
n
181
ILE
501
E
THR
502
n
182
THR
502
E
ASP
503
n
183
ASP
503
E
ASN
504
n
184
ASN
504
E
MET
505
n
185
MET
505
E
PHE
506
n
186
PHE
506
E
CYS
507
n
187
CYS
507
E
ALA
508
n
188
ALA
508
E
GLY
509
n
189
GLY
509
E
TYR
510
n
190
TYR
510
E
LYS
511
n
191
LYS
511
E
PRO
512
n
192
PRO
512
E
GLY
513
n
193
GLY
513
E
GLU
514
n
194
GLU
514
E
GLY
515
n
195
GLY
515
E
LYS
516
n
196
LYS
516
E
ARG
517
n
197
ARG
517
E
GLY
518
n
198
GLY
518
E
ASP
519
n
199
ASP
519
E
ALA
520
n
200
ALA
520
E
CYS
521
n
201
CYS
521
E
GLU
522
n
202
GLU
522
E
GLY
523
n
203
GLY
523
E
ASP
524
n
204
ASP
524
E
SER
525
n
205
SER
525
E
GLY
526
n
206
GLY
526
E
GLY
527
n
207
GLY
527
E
PRO
528
n
208
PRO
528
E
PHE
529
n
209
PHE
529
E
VAL
530
n
210
VAL
530
E
MET
531
n
211
MET
531
E
LYS
532
n
212
LYS
532
E
SER
533
n
213
SER
533
E
PRO
534
n
214
PRO
534
E
TYR
535
n
215
TYR
535
E
ASN
536
n
216
ASN
536
E
ASN
537
n
217
ASN
537
E
ARG
538
n
218
ARG
538
E
TRP
539
n
219
TRP
539
E
TYR
540
n
220
TYR
540
E
GLN
541
n
221
GLN
541
E
MET
542
n
222
MET
542
E
GLY
543
n
223
GLY
543
E
ILE
544
n
224
ILE
544
E
VAL
545
n
225
VAL
545
E
SER
546
n
226
SER
546
E
TRP
547
n
227
TRP
547
E
GLY
548
n
228
GLY
548
E
GLU
549
n
229
GLU
549
E
GLY
550
n
230
GLY
550
E
CYS
551
n
231
CYS
551
E
ASP
552
n
232
ASP
552
E
ARG
553
n
233
ARG
553
E
ASP
554
n
234
ASP
554
E
GLY
555
n
235
GLY
555
E
LYS
556
n
236
LYS
556
E
TYR
557
n
237
TYR
557
E
GLY
558
n
238
GLY
558
E
PHE
559
n
239
PHE
559
E
TYR
560
n
240
TYR
560
E
THR
561
n
241
THR
561
E
HIS
562
n
242
HIS
562
E
VAL
563
n
243
VAL
563
E
PHE
564
n
244
PHE
564
E
ARG
565
n
245
ARG
565
E
LEU
566
n
246
LEU
566
E
LYS
567
n
247
LYS
567
E
LYS
568
n
248
LYS
568
E
TRP
569
n
249
TRP
569
E
ILE
570
n
250
ILE
570
E
GLN
571
n
251
GLN
571
E
LYS
572
n
252
LYS
572
E
VAL
573
n
253
VAL
573
E
ILE
574
n
254
ILE
574
E
ASP
575
n
255
ASP
575
E
ARG
576
n
256
ARG
576
E
LEU
577
n
257
LEU
577
E
GLY
578
n
258
GLY
578
E
SER
579
n
259
SER
579
E
author_and_software_defined_assembly
PISA
4
tetrameric
18810
-34
34590
B
ASN
373
GLYCOSYLATION SITE
B
ASN
53
ASN
E
ASN
373
GLYCOSYLATION SITE
D
ASN
53
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
CYS
231
A
O
CYS
68
A
N
GLU
241
A
N
GLU
78
B
O
LYS
397
B
O
LYS
77
B
N
ILE
383
B
N
ILE
63
B
O
LEU
380
B
O
LEU
60
B
N
PHE
339
B
N
PHE
19
B
O
VAL
336
B
O
VAL
16
B
N
ALA
350
B
N
ALA
30
B
O
GLY
456
B
O
GLY
136
B
N
LEU
485
B
N
LEU
165
B
O
PHE
506
B
O
PHE
186
B
N
TYR
560
B
N
TYR
240
B
O
PHE
559
B
O
PHE
239
B
N
TRP
547
B
N
TRP
227
B
O
TYR
540
B
O
TYR
220
B
N
MET
531
B
N
MET
211
D
O
CYS
231
C
O
CYS
68
D
N
GLU
241
C
N
GLU
78
E
O
LYS
397
D
O
LYS
77
E
N
ILE
383
D
N
ILE
63
E
O
LEU
380
D
O
LEU
60
E
N
PHE
339
D
N
PHE
19
E
O
LEU
338
D
O
LEU
18
E
N
CYS
348
D
N
CYS
28
E
O
VAL
358
D
O
VAL
38
E
N
LEU
423
D
N
LEU
103
E
O
GLY
456
D
O
GLY
136
E
N
LEU
485
D
N
LEU
165
E
O
PHE
506
D
O
PHE
186
E
N
TYR
560
D
N
TYR
240
E
O
PHE
559
D
O
PHE
239
E
N
TRP
547
D
N
TRP
227
E
O
TYR
540
D
O
TYR
220
E
N
MET
531
D
N
MET
211
1
A
HOH
24
I
HOH
1
E
TYR
540
0.078
SIDE CHAIN
1
14.47
1.70
111.00
125.47
A
A
A
CB
CG
CD1
LEU
LEU
LEU
182
182
182
N
1
-16.13
1.70
111.00
94.87
A
A
A
CB
CG
CD2
LEU
LEU
LEU
182
182
182
N
1
7.51
1.10
114.20
121.71
A
A
A
CA
CB
SG
CYS
CYS
CYS
231
231
231
N
1
11.60
1.50
119.30
130.90
A
A
A
C
N
CA
ARG
PRO
PRO
296
297
297
Y
1
-11.93
1.70
111.00
99.07
D
D
D
CB
CG
CD1
LEU
LEU
LEU
182
182
182
N
1
12.05
1.50
119.30
131.35
D
D
D
C
N
CA
ASP
PRO
PRO
263
264
264
Y
1
7.67
1.10
114.20
121.87
E
E
E
CA
CB
SG
CYS
CYS
CYS
507
507
507
N
1
-16.56
2.70
111.00
94.44
E
E
E
N
CA
C
TYR
TYR
TYR
535
535
535
N
1
A
A
CA
CB
ILE
ILE
317
317
0.362
0.023
1.544
1.906
N
1
A
A
CA
C
ILE
ILE
317
317
0.172
0.026
1.525
1.697
N
1
B
E
O
O
HOH
HOH
78
40
0.44
1_555
3_545
1
A
LEU
166
-84.14
37.37
1
A
ASP
173
27.47
47.87
1
A
GLU
177
-72.35
20.62
1
A
ARG
190
-57.46
-130.38
1
A
CYS
191
179.39
146.99
1
A
ALA
193
-59.90
109.65
1
A
LYS
204
-66.48
59.91
1
A
ASP
205
174.62
-31.48
1
A
GLN
206
-74.50
-162.79
1
A
PRO
210
-60.04
-102.43
1
A
ALA
211
72.31
-69.17
1
A
LEU
214
-101.93
65.69
1
A
GLU
216
46.78
-95.54
1
A
ASN
217
-140.78
24.11
1
A
CYS
219
-38.94
130.54
1
A
ALA
234
-145.46
-150.08
1
A
ASN
246
74.48
62.16
1
A
CYS
248
-68.13
-79.59
1
A
ASP
255
-46.64
88.77
1
A
LEU
256
56.31
-105.85
1
A
LEU
260
-43.13
-78.95
1
A
GLU
262
-54.94
95.39
1
A
PRO
264
-19.26
148.91
1
A
ILE
268
83.13
110.64
1
A
GLU
269
-73.26
-83.67
1
A
ASP
275
-74.75
-79.08
1
A
HIS
276
-154.08
16.87
1
A
PHE
277
-135.51
-68.92
1
A
GLN
278
83.42
108.74
1
A
PHE
280
-141.76
14.37
1
A
ASN
282
76.11
-23.26
1
A
GLU
283
72.50
-48.34
1
A
ALA
291
-31.85
-38.08
1
A
PHE
299
-133.67
-90.34
1
A
GLN
303
35.17
39.10
1
A
GLN
307
-16.34
-54.90
1
A
TYR
316
-42.30
-72.85
1
A
GLU
318
90.98
155.01
1
B
LEU
331
-48.51
-89.70
1
B
CYS
348
-153.55
-157.99
1
B
TYR
367
-151.09
80.45
1
B
ASN
373
-168.98
75.83
1
B
HIS
386
-142.33
-73.30
1
B
ARG
388
-65.83
11.11
1
B
ARG
390
114.05
107.29
1
B
ARG
393
-20.71
-38.99
1
B
LYS
394
-92.00
-66.65
1
B
LYS
397
-159.01
73.53
1
B
ASP
402
-138.03
-56.56
1
B
LYS
403
-90.84
-65.31
1
B
ILE
404
62.47
83.74
1
B
ASN
411
-54.98
83.63
1
B
ASN
415
-145.72
38.03
1
B
ARG
418
79.77
68.54
1
B
ASP
419
-88.44
34.50
1
B
ALA
421
-121.30
-159.44
1
B
LEU
422
176.98
89.15
1
B
GLN
444
-53.15
-71.32
1
B
ASN
463
-35.83
136.13
1
B
SER
471
55.60
110.76
1
B
GLU
474
-54.94
-0.87
1
B
ALA
495
-66.63
19.93
1
B
THR
497
-174.47
145.31
1
B
ARG
500
-54.88
101.83
1
B
ASN
504
-100.79
43.58
1
B
GLU
514
-14.75
-23.05
1
B
ASP
519
-178.23
144.80
1
B
CYS
521
-82.30
-156.22
1
B
ASN
536
55.37
0.75
1
B
ASN
537
35.33
27.99
1
B
LEU
577
-66.17
77.08
1
D
LEU
167
-47.44
170.49
1
D
THR
169
-56.19
-168.75
1
D
ASP
173
38.76
30.88
1
D
GLU
177
-95.49
53.72
1
D
ALA
183
-96.69
41.69
1
D
ARG
190
-54.96
-143.30
1
D
CYS
191
177.53
120.52
1
D
LYS
204
-60.06
90.05
1
D
ASP
205
141.52
-2.53
1
D
GLN
206
-94.43
-120.54
1
D
ASP
207
-169.14
69.44
1
D
PRO
210
-67.33
-100.61
1
D
ALA
211
87.29
-48.75
1
D
ALA
215
-9.77
116.67
1
D
GLU
216
33.07
-119.10
1
D
GLU
227
-148.83
12.73
1
D
ALA
234
-164.52
-145.89
1
D
ASP
239
-80.02
49.97
1
D
ASN
246
67.08
61.65
1
D
CYS
248
-64.36
-91.55
1
D
ASP
255
-62.17
90.60
1
D
LEU
256
59.66
-100.57
1
D
ASP
258
-55.95
-7.82
1
D
LEU
260
10.10
-82.20
1
D
PRO
264
11.08
141.94
1
D
ASP
265
69.05
-19.91
1
D
ALA
267
-31.29
131.70
1
D
ILE
268
64.55
146.98
1
D
GLU
269
-96.96
-87.13
1
D
ASP
275
-51.36
-83.92
1
D
HIS
276
-146.73
-2.83
1
D
PHE
277
-121.25
-87.55
1
D
GLN
278
112.24
92.60
1
D
PRO
279
-65.53
91.28
1
D
PHE
280
-75.71
42.05
1
D
PHE
281
-147.52
12.06
1
D
ASN
282
70.98
-29.39
1
D
GLU
283
84.53
-48.76
1
D
GLU
290
-20.68
-51.92
1
D
PHE
299
-132.16
-95.06
1
D
GLN
303
41.65
27.96
1
D
GLU
318
68.59
148.92
1
E
ALA
350
171.80
-174.77
1
E
SER
354
-160.96
-164.57
1
E
HIS
363
-66.76
14.94
1
E
TYR
367
-160.78
81.97
1
E
PRO
369
-48.24
-17.18
1
E
ASP
371
97.12
24.67
1
E
ASP
377
-66.46
4.25
1
E
HIS
386
-140.10
-73.58
1
E
ARG
388
-56.58
14.58
1
E
THR
389
-177.62
135.38
1
E
ARG
390
122.08
114.98
1
E
ARG
393
-39.68
-25.94
1
E
GLU
396
-66.66
-171.76
1
E
LYS
397
-166.76
80.59
1
E
ASP
402
-140.81
-49.00
1
E
LYS
403
-98.59
-77.88
1
E
ILE
404
63.91
88.96
1
E
ASN
411
-61.71
35.59
1
E
GLU
414
-127.83
-65.29
1
E
ASP
419
-66.92
72.63
1
E
LEU
422
-150.61
71.93
1
E
LYS
443
-36.41
-30.80
1
E
ASN
463
-39.25
133.37
1
E
ARG
464
-67.10
-77.76
1
E
SER
471
59.15
122.70
1
E
GLU
474
-68.39
34.51
1
E
VAL
475
-164.79
8.23
1
E
GLU
514
-20.68
-33.24
1
E
ASP
519
176.49
162.22
1
E
ASN
536
40.53
12.14
1
E
ASN
537
5.52
61.73
1
E
SER
546
-112.40
-77.58
1
E
ASP
575
-59.56
-5.76
1
E
LEU
577
-91.66
51.98
0.242
0.205
0.205
3.2
7.0
30519
10.
84.
RANDOM
99999999.
0.0001
1
THROUGHOUT
1.
MOLECULAR REPLACEMENT
THROMBIN
3.2
7.0
87
6901
116
0
6698
3.2
42.3
1A0H
31648
0.5
0.12
0.12
1
5.7
88.
0.19
3.2
3.3
1.8
0.19
1
60.
data collection
XENGEN
data reduction
SCALEK
model building
X-PLOR
3.84
refinement
X-PLOR
3.84
data reduction
XENGEN
data scaling
SCALEK
phasing
X-PLOR
3.84
THE X-RAY CRYSTAL STRUCTURE OF PPACK-MEIZOTHROMBIN DESF1: KRINGLE/THROMBIN AND CARBOHYDRATE/KRINGLE/THROMBIN INTERACTIONS AND LOCATION OF THE LINKER CHAIN
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
ASP
173
A
ASP
10
HELX_P
A
GLY
175
A
GLY
12
5
1
3
A
ALA
199
A
ALA
36
HELX_P
A
LEU
202
A
LEU
39
1
2
4
A
GLU
290
A
GLU
129
HELX_P
A
ASP
292
A
ASP
131
5
3
3
A
GLU
309
A
GLU
148
HELX_P
A
TYR
316
A
TYR
155
1
4
8
B
ALA
362
B
ALA
42
HELX_P
B
CYS
364
B
CYS
44
5
5
3
B
PRO
368
B
PRO
48
HELX_P
B
TRP
370
B
TRP
50
5
6
3
B
VAL
376
B
VAL
56
HELX_P
B
ASP
378
B
ASP
58
5
7
3
B
LYS
443
B
LYS
123
HELX_P
B
LEU
449
B
LEU
129
1
8
7
B
VAL
472
B
VAL
152
HELX_P
B
VAL
475
B
VAL
155
5
9
4
B
ARG
490
B
ARG
170
HELX_P
B
SER
496
B
SER
176
1
10
7
B
TYR
535
B
TYR
215
HELX_P
B
ASN
537
B
ASN
217
5
11
3
B
VAL
563
B
VAL
243
HELX_P
B
ARG
576
B
ARG
256
1
12
14
D
ASP
173
C
ASP
10
HELX_P
D
GLY
175
C
GLY
12
5
13
3
D
GLU
197
C
GLU
34
HELX_P
D
SER
203
C
SER
40
1
14
7
D
LEU
256
C
LEU
93
HELX_P
D
ARG
259
C
ARG
96
5
15
4
D
GLU
290
C
GLU
129
HELX_P
D
ASP
292
C
ASP
131
5
16
3
D
GLU
300
C
GLU
139
HELX_P
D
LYS
302
C
LYS
141
5
17
3
D
GLU
309
C
GLU
148
HELX_P
D
ILE
317
C
ILE
156
1
18
9
E
ALA
362
D
ALA
42
HELX_P
E
CYS
364
D
CYS
44
5
19
3
E
PRO
368
D
PRO
48
HELX_P
E
TRP
370
D
TRP
50
5
20
3
E
VAL
376
D
VAL
56
HELX_P
E
ASP
378
D
ASP
58
5
21
3
E
LYS
443
D
LYS
123
HELX_P
E
LEU
449
D
LEU
129
1
22
7
E
VAL
472
D
VAL
152
HELX_P
E
VAL
475
D
VAL
155
5
23
4
E
ARG
490
D
ARG
170
HELX_P
E
SER
496
D
SER
176
1
24
7
E
VAL
563
D
VAL
243
HELX_P
E
ARG
576
D
ARG
256
5
25
14
disulf
2.033
A
CYS
170
A
SG
CYS
7
1_555
A
CYS
248
A
SG
CYS
85
1_555
disulf
2.034
A
CYS
191
A
SG
CYS
28
1_555
A
CYS
231
A
SG
CYS
68
1_555
disulf
2.035
A
CYS
219
A
SG
CYS
56
1_555
A
CYS
243
A
SG
CYS
80
1_555
disulf
2.005
A
CYS
293
A
SG
CYS
132
1_555
B
CYS
439
B
SG
CYS
119
1_555
disulf
2.009
B
CYS
348
B
SG
CYS
28
1_555
B
CYS
364
B
SG
CYS
44
1_555
disulf
2.049
B
CYS
493
B
SG
CYS
173
1_555
B
CYS
507
B
SG
CYS
187
1_555
disulf
2.024
B
CYS
521
B
SG
CYS
201
1_555
B
CYS
551
B
SG
CYS
231
1_555
disulf
2.024
D
CYS
170
C
SG
CYS
7
1_555
D
CYS
248
C
SG
CYS
85
1_555
disulf
2.013
D
CYS
191
C
SG
CYS
28
1_555
D
CYS
231
C
SG
CYS
68
1_555
disulf
2.037
D
CYS
219
C
SG
CYS
56
1_555
D
CYS
243
C
SG
CYS
80
1_555
disulf
2.039
D
CYS
293
C
SG
CYS
132
1_555
E
CYS
439
D
SG
CYS
119
1_555
disulf
2.017
E
CYS
348
D
SG
CYS
28
1_555
E
CYS
364
D
SG
CYS
44
1_555
disulf
2.016
E
CYS
493
D
SG
CYS
173
1_555
E
CYS
507
D
SG
CYS
187
1_555
disulf
2.028
E
CYS
521
D
SG
CYS
201
1_555
E
CYS
551
D
SG
CYS
231
1_555
covale
1.458
one
B
0G6
1
G
C3
0G6
1_555
B
HIS
363
B
NE2
HIS
43
1_555
covale
1.396
none
B
0G6
1
G
C2
0G6
1_555
B
SER
525
B
OG
SER
205
1_555
covale
1.450
one
N-Glycosylation
B
ASN
373
B
ND2
ASN
53
1_555
C
NAG
1
E
C1
NAG
1_555
covale
1.458
one
E
0G6
1
H
C3
0G6
1_555
E
HIS
363
D
NE2
HIS
43
1_555
covale
1.377
none
E
0G6
1
H
C2
0G6
1_555
E
SER
525
D
OG
SER
205
1_555
covale
1.446
one
N-Glycosylation
E
ASN
373
D
ND2
ASN
53
1_555
F
NAG
1
F
C1
NAG
1_555
covale
1.391
both
C
NAG
1
E
O4
NAG
1_555
C
NAG
2
E
C1
NAG
1_555
covale
1.384
both
F
NAG
1
F
O4
NAG
1_555
F
NAG
2
F
C1
NAG
1_555
HYDROLASE/HYDROLASE INHIBITOR
SERINE PROTEASE, COAGULATION, THROMBIN, PROTHROMBIN, MEIZOTHROMBIN, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
B
SER
342
B
SER
22
1
B
PRO
343
B
PRO
23
1.38
E
SER
342
D
SER
22
1
E
PRO
343
D
PRO
23
0.78
given
-0.900240
-0.435360
-0.005550
-0.433810
0.897970
-0.073910
0.037160
-0.064130
-0.997250
178.65675
42.02666
32.13877
THRB_BOVIN
UNP
1
1
P00735
MARVRGPRLPGCLALAALFSLVHSQHVFLAHQQASSLLQRARRANKGFLEEVRKGNLERECLEEPCSREEAFEALESLSA
TDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSVTRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRN
PDGSITGPWCYTTSPTLRREECSVPVCGQDRVTVEVIPRSGGSTTSQSPLLETCVPDRGREYRGRLAVTTSGSRCLAWSS
EQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSE
DHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGRIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLIS
DRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDY
IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGE
GKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS
THRB_BOVIN
UNP
2
1
P00735
MARVRGPRLPGCLALAALFSLVHSQHVFLAHQQASSLLQRARRANKGFLEEVRKGNLERECLEEPCSREEAFEALESLSA
TDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSVTRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRN
PDGSITGPWCYTTSPTLRREECSVPVCGQDRVTVEVIPRSGGSTTSQSPLLETCVPDRGREYRGRLAVTTSGSRCLAWSS
EQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSE
DHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGRIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLIS
DRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDY
IHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGE
GKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS
208
366
1A0H
164
320
P00735
A
1
1
159
367
625
1A0H
321
579
P00735
B
2
1
259
208
366
1A0H
164
320
P00735
D
1
1
159
367
625
1A0H
321
579
P00735
E
2
1
259
1
SER
conflict
HIS
187
1A0H
A
P00735
UNP
231
24
3
SER
conflict
HIS
187
1A0H
D
P00735
UNP
231
24
2
4
2
4
2
4
2
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TRP
230
A
TRP
67
A
TYR
232
A
TYR
69
A
PHE
240
A
PHE
77
A
TYR
242
A
TYR
79
B
LYS
397
B
LYS
77
B
MET
400
B
MET
80
B
LEU
379
B
LEU
59
B
ILE
383
B
ILE
63
B
GLN
335
B
GLN
15
B
ARG
340
B
ARG
20
B
GLU
345
B
GLU
25
B
SER
351
B
SER
31
B
LYS
455
B
LYS
135
B
THR
459
B
THR
139
B
VAL
482
B
VAL
162
B
PRO
486
B
PRO
166
B
MET
505
B
MET
185
B
ALA
508
B
ALA
188
B
GLY
558
B
GLY
238
B
HIS
562
B
HIS
242
B
TRP
539
B
TRP
219
B
TRP
547
B
TRP
227
B
PRO
528
B
PRO
208
B
LYS
532
B
LYS
212
D
TRP
230
C
TRP
67
D
TYR
232
C
TYR
69
D
PHE
240
C
PHE
77
D
TYR
242
C
TYR
79
E
LYS
397
D
LYS
77
E
SER
399
D
SER
79
E
LEU
379
D
LEU
59
E
ILE
383
D
ILE
63
E
VAL
336
D
VAL
16
E
ARG
340
D
ARG
20
E
GLU
345
D
GLU
25
E
CYS
348
D
CYS
28
E
TRP
357
D
TRP
37
E
THR
360
D
THR
40
E
ALA
421
D
ALA
101
E
LYS
424
D
LYS
104
E
LYS
455
D
LYS
135
E
THR
459
D
THR
139
E
VAL
482
D
VAL
162
E
PRO
486
D
PRO
166
E
MET
505
D
MET
185
E
ALA
508
D
ALA
188
E
GLY
558
D
GLY
238
E
THR
561
D
THR
241
E
TRP
539
D
TRP
219
E
TRP
547
D
TRP
227
E
PRO
528
D
PRO
208
E
LYS
532
D
LYS
212
92
P 41 21 2