0.025747 0.000000 0.000000 0.000000 0.019814 0.000000 0.000000 0.000000 0.015451 0.00000 0.00000 0.00000 Dealwis, C.G. Fernandez, E.J. Lolis, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 38.840 50.470 64.720 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 95 6941 6946 10.1073/pnas.95.12.6941 9618518 Crystal structure of chemically synthesized [N33A] stromal cell-derived factor 1alpha, a potent ligand for the HIV-1 "fusin" coreceptor. 1998 10.2210/pdb1a15/pdb pdb_00001a15 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 133 1 IMAGE PLATE 1997-09 MAR scanner 300 mm plate M x-ray 1 0.95 1.0 X12B NSLS 0.95 SYNCHROTRON NSLS BEAMLINE X12B 7806.254 STROMAL DERIVED FACTOR-1ALPHA N33A 2 syn polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 86 nat water SDF-1 no no KPVSLSYRCPCRFFESHVARANVKHLKILNTPACALQIVARLKNNNRQVCIDPKLKWIQEYLEKALN KPVSLSYRCPCRFFESHVARANVKHLKILNTPACALQIVARLKNNNRQVCIDPKLKWIQEYLEKALN A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.22 35 VAPOR DIFFUSION 8.5 PROTEIN CONCENTRATION 10MG/ML. WELL SOLUTION 1.9M AMMONIUM SULFATE 0.1M TRIS-HCL PH 8.5. CRYSTALLIZED USING VAPOR DIFFUSION., vapor diffusion database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 1998-08-12 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-11-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-12-22 REL SO4 SULFATE ION HOH water CHEMICALLY SYNTHESIZED sample SO4 0 2 SO4 SO4 0 A HOH 1 3 HOH HOH 68 A HOH 6 3 HOH HOH 69 A HOH 7 3 HOH HOH 70 A HOH 12 3 HOH HOH 71 A HOH 15 3 HOH HOH 72 A HOH 16 3 HOH HOH 73 A HOH 20 3 HOH HOH 74 A HOH 31 3 HOH HOH 75 A HOH 33 3 HOH HOH 76 A HOH 36 3 HOH HOH 77 A HOH 38 3 HOH HOH 78 A HOH 39 3 HOH HOH 79 A HOH 40 3 HOH HOH 80 A HOH 41 3 HOH HOH 81 A HOH 43 3 HOH HOH 82 A HOH 44 3 HOH HOH 83 A HOH 45 3 HOH HOH 84 A HOH 49 3 HOH HOH 85 A HOH 50 3 HOH HOH 86 A HOH 51 3 HOH HOH 87 A HOH 53 3 HOH HOH 88 A HOH 54 3 HOH HOH 89 A HOH 55 3 HOH HOH 90 A HOH 56 3 HOH HOH 91 A HOH 57 3 HOH HOH 92 A HOH 58 3 HOH HOH 93 A HOH 59 3 HOH HOH 94 A HOH 60 3 HOH HOH 95 A HOH 61 3 HOH HOH 96 A HOH 64 3 HOH HOH 97 A HOH 67 3 HOH HOH 98 A HOH 68 3 HOH HOH 99 A HOH 69 3 HOH HOH 100 A HOH 70 3 HOH HOH 101 A HOH 71 3 HOH HOH 102 A HOH 75 3 HOH HOH 103 A HOH 76 3 HOH HOH 104 A HOH 77 3 HOH HOH 105 A HOH 78 3 HOH HOH 106 A HOH 83 3 HOH HOH 107 A HOH 2 3 HOH HOH 68 B HOH 3 3 HOH HOH 69 B HOH 4 3 HOH HOH 70 B HOH 5 3 HOH HOH 71 B HOH 8 3 HOH HOH 72 B HOH 9 3 HOH HOH 73 B HOH 10 3 HOH HOH 74 B HOH 11 3 HOH HOH 75 B HOH 13 3 HOH HOH 76 B HOH 14 3 HOH HOH 77 B HOH 17 3 HOH HOH 78 B HOH 18 3 HOH HOH 79 B HOH 19 3 HOH HOH 80 B HOH 21 3 HOH HOH 81 B HOH 22 3 HOH HOH 82 B HOH 23 3 HOH HOH 83 B HOH 24 3 HOH HOH 84 B HOH 25 3 HOH HOH 85 B HOH 26 3 HOH HOH 86 B HOH 27 3 HOH HOH 87 B HOH 28 3 HOH HOH 88 B HOH 29 3 HOH HOH 89 B HOH 30 3 HOH HOH 90 B HOH 32 3 HOH HOH 91 B HOH 34 3 HOH HOH 92 B HOH 35 3 HOH HOH 93 B HOH 37 3 HOH HOH 94 B HOH 42 3 HOH HOH 95 B HOH 46 3 HOH HOH 96 B HOH 47 3 HOH HOH 97 B HOH 48 3 HOH HOH 98 B HOH 52 3 HOH HOH 99 B HOH 62 3 HOH HOH 100 B HOH 63 3 HOH HOH 101 B HOH 65 3 HOH HOH 102 B HOH 66 3 HOH HOH 103 B HOH 72 3 HOH HOH 104 B HOH 73 3 HOH HOH 105 B HOH 74 3 HOH HOH 106 B HOH 79 3 HOH HOH 107 B HOH 80 3 HOH HOH 108 B HOH 81 3 HOH HOH 109 B HOH 82 3 HOH HOH 110 B HOH 84 3 HOH HOH 111 B HOH 85 3 HOH HOH 112 B HOH 86 3 HOH HOH 113 B LYS 1 n 1 LYS 1 A PRO 2 n 2 PRO 2 A VAL 3 n 3 VAL 3 A SER 4 n 4 SER 4 A LEU 5 n 5 LEU 5 A SER 6 n 6 SER 6 A TYR 7 n 7 TYR 7 A ARG 8 n 8 ARG 8 A CYS 9 n 9 CYS 9 A PRO 10 n 10 PRO 10 A CYS 11 n 11 CYS 11 A ARG 12 n 12 ARG 12 A PHE 13 n 13 PHE 13 A PHE 14 n 14 PHE 14 A GLU 15 n 15 GLU 15 A SER 16 n 16 SER 16 A HIS 17 n 17 HIS 17 A VAL 18 n 18 VAL 18 A ALA 19 n 19 ALA 19 A ARG 20 n 20 ARG 20 A ALA 21 n 21 ALA 21 A ASN 22 n 22 ASN 22 A VAL 23 n 23 VAL 23 A LYS 24 n 24 LYS 24 A HIS 25 n 25 HIS 25 A LEU 26 n 26 LEU 26 A LYS 27 n 27 LYS 27 A ILE 28 n 28 ILE 28 A LEU 29 n 29 LEU 29 A ASN 30 n 30 ASN 30 A THR 31 n 31 THR 31 A PRO 32 n 32 PRO 32 A ALA 33 n 33 ALA 33 A CYS 34 n 34 CYS 34 A ALA 35 n 35 ALA 35 A LEU 36 n 36 LEU 36 A GLN 37 n 37 GLN 37 A ILE 38 n 38 ILE 38 A VAL 39 n 39 VAL 39 A ALA 40 n 40 ALA 40 A ARG 41 n 41 ARG 41 A LEU 42 n 42 LEU 42 A LYS 43 n 43 LYS 43 A ASN 44 n 44 ASN 44 A ASN 45 n 45 ASN 45 A ASN 46 n 46 ASN 46 A ARG 47 n 47 ARG 47 A GLN 48 n 48 GLN 48 A VAL 49 n 49 VAL 49 A CYS 50 n 50 CYS 50 A ILE 51 n 51 ILE 51 A ASP 52 n 52 ASP 52 A PRO 53 n 53 PRO 53 A LYS 54 n 54 LYS 54 A LEU 55 n 55 LEU 55 A LYS 56 n 56 LYS 56 A TRP 57 n 57 TRP 57 A ILE 58 n 58 ILE 58 A GLN 59 n 59 GLN 59 A GLU 60 n 60 GLU 60 A TYR 61 n 61 TYR 61 A LEU 62 n 62 LEU 62 A GLU 63 n 63 GLU 63 A LYS 64 n 64 LYS 64 A ALA 65 n 65 ALA 65 A LEU 66 n 66 LEU 66 A ASN 67 n 67 ASN 67 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B ARG 8 n 8 ARG 8 B CYS 9 n 9 CYS 9 B PRO 10 n 10 PRO 10 B CYS 11 n 11 CYS 11 B ARG 12 n 12 ARG 12 B PHE 13 n 13 PHE 13 B PHE 14 n 14 PHE 14 B GLU 15 n 15 GLU 15 B SER 16 n 16 SER 16 B HIS 17 n 17 HIS 17 B VAL 18 n 18 VAL 18 B ALA 19 n 19 ALA 19 B ARG 20 n 20 ARG 20 B ALA 21 n 21 ALA 21 B ASN 22 n 22 ASN 22 B VAL 23 n 23 VAL 23 B LYS 24 n 24 LYS 24 B HIS 25 n 25 HIS 25 B LEU 26 n 26 LEU 26 B LYS 27 n 27 LYS 27 B ILE 28 n 28 ILE 28 B LEU 29 n 29 LEU 29 B ASN 30 n 30 ASN 30 B THR 31 n 31 THR 31 B PRO 32 n 32 PRO 32 B ALA 33 n 33 ALA 33 B CYS 34 n 34 CYS 34 B ALA 35 n 35 ALA 35 B LEU 36 n 36 LEU 36 B GLN 37 n 37 GLN 37 B ILE 38 n 38 ILE 38 B VAL 39 n 39 VAL 39 B ALA 40 n 40 ALA 40 B ARG 41 n 41 ARG 41 B LEU 42 n 42 LEU 42 B LYS 43 n 43 LYS 43 B ASN 44 n 44 ASN 44 B ASN 45 n 45 ASN 45 B ASN 46 n 46 ASN 46 B ARG 47 n 47 ARG 47 B GLN 48 n 48 GLN 48 B VAL 49 n 49 VAL 49 B CYS 50 n 50 CYS 50 B ILE 51 n 51 ILE 51 B ASP 52 n 52 ASP 52 B PRO 53 n 53 PRO 53 B LYS 54 n 54 LYS 54 B LEU 55 n 55 LEU 55 B LYS 56 n 56 LYS 56 B TRP 57 n 57 TRP 57 B ILE 58 n 58 ILE 58 B GLN 59 n 59 GLN 59 B GLU 60 n 60 GLU 60 B TYR 61 n 61 TYR 61 B LEU 62 n 62 LEU 62 B GLU 63 n 63 GLU 63 B LYS 64 n 64 LYS 64 B n 65 65 B n 66 66 B n 67 67 B author_and_software_defined_assembly PISA 2 dimeric 1640 -19 8170 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 49 A O VAL 49 A N ALA 40 A N ALA 40 A O ALA 35 A O ALA 35 A N THR 31 A N THR 31 B O VAL 49 B O VAL 49 B N ALA 40 B N ALA 40 B O VAL 39 B O VAL 39 B N LYS 27 B N LYS 27 1 A CG1 VAL 3 A CG1 VAL 3 1 Y 1 A CG2 VAL 3 A CG2 VAL 3 1 Y 1 A CG ARG 8 A CG ARG 8 1 Y 1 A CD ARG 8 A CD ARG 8 1 Y 1 A NE ARG 8 A NE ARG 8 1 Y 1 A CZ ARG 8 A CZ ARG 8 1 Y 1 A NH1 ARG 8 A NH1 ARG 8 1 Y 1 A NH2 ARG 8 A NH2 ARG 8 1 Y 1 A CG ASN 67 A CG ASN 67 1 Y 1 A OD1 ASN 67 A OD1 ASN 67 1 Y 1 A ND2 ASN 67 A ND2 ASN 67 1 Y 1 B CG ARG 8 B CG ARG 8 1 Y 1 B CD ARG 8 B CD ARG 8 1 Y 1 B NE ARG 8 B NE ARG 8 1 Y 1 B CZ ARG 8 B CZ ARG 8 1 Y 1 B NH1 ARG 8 B NH1 ARG 8 1 Y 1 B NH2 ARG 8 B NH2 ARG 8 1 Y 1 B CG GLU 63 B CG GLU 63 1 Y 1 B CD GLU 63 B CD GLU 63 1 Y 1 B OE1 GLU 63 B OE1 GLU 63 1 Y 1 B OE2 GLU 63 B OE2 GLU 63 1 Y 1 B CG LYS 64 B CG LYS 64 1 Y 1 B CD LYS 64 B CD LYS 64 1 Y 1 B CE LYS 64 B CE LYS 64 1 Y 1 B NZ LYS 64 B NZ LYS 64 1 Y 1 B LYS 1 B LYS 1 1 Y 1 B PRO 2 B PRO 2 1 Y 1 B VAL 3 B VAL 3 1 Y 1 B SER 4 B SER 4 1 Y 1 B LEU 5 B LEU 5 1 Y 1 B SER 6 B SER 6 1 Y 1 B TYR 7 B TYR 7 1 Y 1 B ALA 65 B ALA 65 1 Y 1 B LEU 66 B LEU 66 1 Y 1 B ASN 67 B ASN 67 1 Y 1 A A O OG VAL SER 3 6 1.85 1 B LEU 62 -19.17 1 A A C N PRO VAL 2 3 1.04 1 A A C N VAL SER 3 4 1.98 1 A A C N TYR ARG 7 8 1.60 1 -16.63 2.20 117.20 100.57 B B B CA C N LEU LEU GLU 62 62 63 Y 1 21.64 2.70 111.00 132.64 B B B N CA C GLU GLU GLU 63 63 63 N 1 A A C N PRO VAL 2 3 -0.296 0.023 1.336 1.040 Y 1 A A C N TYR ARG 7 8 0.265 0.023 1.336 1.601 Y 1 B B C N LEU GLU 62 63 0.243 0.023 1.336 1.579 Y 1 A SER 6 -140.18 -25.53 1 A TYR 7 -108.99 78.48 1 A ALA 35 64.00 -166.93 1 A ASN 46 58.69 18.91 1 A LYS 54 -69.32 4.04 1 B ALA 33 104.45 -26.08 1 B ASN 44 70.19 -41.17 1 B GLU 63 26.59 157.57 BULK SOLVENT CORRECTION WAS USED DURING SLOWCOOL AND POSITIONAL REFINEMENT IN XPLOR BETWEEN 25-2.2 ANGSTROM RESOLUTION. 0.298 0.233 0.233 2.2 5 575 5753 10 95 RANDOM 1 THROUGHOUT 3 MULTIPLE ISOMORPHOUS REPLACEMENT WITH ANOMALOUS SCATTERING (MIRAS) 5 0.2 2.2 5 64 1059 5 0 990 0.006 1.4 26.7 1.2 0.3 0.26 2.3 52 85 8 9 92 13.9 2.2 25 1A15 8725 0 0.046 1 9.3 2.7 97.6 0.087 2.2 2.24 3.1 2.7 99 data reduction DENZO data scaling SCALEPACK model building X-PLOR 3.843 refinement X-PLOR 3.843 phasing X-PLOR 3.843 SDF-1ALPHA 1 N N 1 N N 2 N N 3 N N 3 N N A ARG 20 A ARG 20 HELX_P A ASN 22 A ASN 22 5 1 3 A TRP 57 A TRP 57 HELX_P A LYS 64 A LYS 64 1 2 8 B ARG 20 B ARG 20 HELX_P B ASN 22 B ASN 22 5 3 3 B ILE 58 B ILE 58 HELX_P B TYR 61 B TYR 61 1 4 4 disulf 2.389 A CYS 9 A SG CYS 9 1_555 A CYS 34 A SG CYS 34 1_555 disulf 2.350 A CYS 11 A SG CYS 11 1_555 A CYS 50 A SG CYS 50 1_555 disulf 2.386 B CYS 9 B SG CYS 9 1_555 B CYS 34 B SG CYS 34 1_555 disulf 2.347 B CYS 11 B SG CYS 11 1_555 B CYS 50 B SG CYS 50 1_555 CHEMOKINE CHEMOKINE, HUMAN STROMAL CELL-DERIVED FACTOR-1ALPHA SDF1_HUMAN UNP 1 1 P48061 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQ EYLEKALNKRFKM 22 88 1A15 1 67 P48061 A 1 1 67 22 88 1A15 1 67 P48061 B 1 1 67 1 ASN engineered mutation ALA 33 1A15 A P48061 UNP 54 33 2 ASN engineered mutation ALA 33 1A15 B P48061 UNP 54 33 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A GLN 48 A GLN 48 A ILE 51 A ILE 51 A ALA 35 A ALA 35 A LEU 42 A LEU 42 A VAL 23 A VAL 23 A THR 31 A THR 31 B GLN 48 B GLN 48 B CYS 50 B CYS 50 B ILE 38 B ILE 38 B LEU 42 B LEU 42 B VAL 23 B VAL 23 B ILE 28 B ILE 28 BINDING SITE FOR RESIDUE SO4 A 0 A SO4 0 Software 7 A ALA 19 A ALA 19 7 1_555 A ARG 20 A ARG 20 7 1_555 A ALA 21 A ALA 21 7 1_555 A HOH 82 D HOH 7 1_555 A HOH 84 D HOH 7 1_555 B LYS 24 B LYS 24 7 2_465 B ASN 46 B ASN 46 7 2_465 19 P 21 21 21