0.025747
0.000000
0.000000
0.000000
0.019814
0.000000
0.000000
0.000000
0.015451
0.00000
0.00000
0.00000
Dealwis, C.G.
Fernandez, E.J.
Lolis, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
38.840
50.470
64.720
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
95
6941
6946
10.1073/pnas.95.12.6941
9618518
Crystal structure of chemically synthesized [N33A] stromal cell-derived factor 1alpha, a potent ligand for the HIV-1 "fusin" coreceptor.
1998
10.2210/pdb1a15/pdb
pdb_00001a15
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
133
1
IMAGE PLATE
1997-09
MAR scanner 300 mm plate
M
x-ray
1
0.95
1.0
X12B
NSLS
0.95
SYNCHROTRON
NSLS BEAMLINE X12B
7806.254
STROMAL DERIVED FACTOR-1ALPHA
N33A
2
syn
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
86
nat
water
SDF-1
no
no
KPVSLSYRCPCRFFESHVARANVKHLKILNTPACALQIVARLKNNNRQVCIDPKLKWIQEYLEKALN
KPVSLSYRCPCRFFESHVARANVKHLKILNTPACALQIVARLKNNNRQVCIDPKLKWIQEYLEKALN
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.22
35
VAPOR DIFFUSION
8.5
PROTEIN CONCENTRATION 10MG/ML. WELL SOLUTION 1.9M AMMONIUM SULFATE 0.1M TRIS-HCL PH 8.5. CRYSTALLIZED USING VAPOR DIFFUSION., vapor diffusion
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
1998-08-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-12-22
REL
SO4
SULFATE ION
HOH
water
CHEMICALLY SYNTHESIZED
sample
SO4
0
2
SO4
SO4
0
A
HOH
1
3
HOH
HOH
68
A
HOH
6
3
HOH
HOH
69
A
HOH
7
3
HOH
HOH
70
A
HOH
12
3
HOH
HOH
71
A
HOH
15
3
HOH
HOH
72
A
HOH
16
3
HOH
HOH
73
A
HOH
20
3
HOH
HOH
74
A
HOH
31
3
HOH
HOH
75
A
HOH
33
3
HOH
HOH
76
A
HOH
36
3
HOH
HOH
77
A
HOH
38
3
HOH
HOH
78
A
HOH
39
3
HOH
HOH
79
A
HOH
40
3
HOH
HOH
80
A
HOH
41
3
HOH
HOH
81
A
HOH
43
3
HOH
HOH
82
A
HOH
44
3
HOH
HOH
83
A
HOH
45
3
HOH
HOH
84
A
HOH
49
3
HOH
HOH
85
A
HOH
50
3
HOH
HOH
86
A
HOH
51
3
HOH
HOH
87
A
HOH
53
3
HOH
HOH
88
A
HOH
54
3
HOH
HOH
89
A
HOH
55
3
HOH
HOH
90
A
HOH
56
3
HOH
HOH
91
A
HOH
57
3
HOH
HOH
92
A
HOH
58
3
HOH
HOH
93
A
HOH
59
3
HOH
HOH
94
A
HOH
60
3
HOH
HOH
95
A
HOH
61
3
HOH
HOH
96
A
HOH
64
3
HOH
HOH
97
A
HOH
67
3
HOH
HOH
98
A
HOH
68
3
HOH
HOH
99
A
HOH
69
3
HOH
HOH
100
A
HOH
70
3
HOH
HOH
101
A
HOH
71
3
HOH
HOH
102
A
HOH
75
3
HOH
HOH
103
A
HOH
76
3
HOH
HOH
104
A
HOH
77
3
HOH
HOH
105
A
HOH
78
3
HOH
HOH
106
A
HOH
83
3
HOH
HOH
107
A
HOH
2
3
HOH
HOH
68
B
HOH
3
3
HOH
HOH
69
B
HOH
4
3
HOH
HOH
70
B
HOH
5
3
HOH
HOH
71
B
HOH
8
3
HOH
HOH
72
B
HOH
9
3
HOH
HOH
73
B
HOH
10
3
HOH
HOH
74
B
HOH
11
3
HOH
HOH
75
B
HOH
13
3
HOH
HOH
76
B
HOH
14
3
HOH
HOH
77
B
HOH
17
3
HOH
HOH
78
B
HOH
18
3
HOH
HOH
79
B
HOH
19
3
HOH
HOH
80
B
HOH
21
3
HOH
HOH
81
B
HOH
22
3
HOH
HOH
82
B
HOH
23
3
HOH
HOH
83
B
HOH
24
3
HOH
HOH
84
B
HOH
25
3
HOH
HOH
85
B
HOH
26
3
HOH
HOH
86
B
HOH
27
3
HOH
HOH
87
B
HOH
28
3
HOH
HOH
88
B
HOH
29
3
HOH
HOH
89
B
HOH
30
3
HOH
HOH
90
B
HOH
32
3
HOH
HOH
91
B
HOH
34
3
HOH
HOH
92
B
HOH
35
3
HOH
HOH
93
B
HOH
37
3
HOH
HOH
94
B
HOH
42
3
HOH
HOH
95
B
HOH
46
3
HOH
HOH
96
B
HOH
47
3
HOH
HOH
97
B
HOH
48
3
HOH
HOH
98
B
HOH
52
3
HOH
HOH
99
B
HOH
62
3
HOH
HOH
100
B
HOH
63
3
HOH
HOH
101
B
HOH
65
3
HOH
HOH
102
B
HOH
66
3
HOH
HOH
103
B
HOH
72
3
HOH
HOH
104
B
HOH
73
3
HOH
HOH
105
B
HOH
74
3
HOH
HOH
106
B
HOH
79
3
HOH
HOH
107
B
HOH
80
3
HOH
HOH
108
B
HOH
81
3
HOH
HOH
109
B
HOH
82
3
HOH
HOH
110
B
HOH
84
3
HOH
HOH
111
B
HOH
85
3
HOH
HOH
112
B
HOH
86
3
HOH
HOH
113
B
LYS
1
n
1
LYS
1
A
PRO
2
n
2
PRO
2
A
VAL
3
n
3
VAL
3
A
SER
4
n
4
SER
4
A
LEU
5
n
5
LEU
5
A
SER
6
n
6
SER
6
A
TYR
7
n
7
TYR
7
A
ARG
8
n
8
ARG
8
A
CYS
9
n
9
CYS
9
A
PRO
10
n
10
PRO
10
A
CYS
11
n
11
CYS
11
A
ARG
12
n
12
ARG
12
A
PHE
13
n
13
PHE
13
A
PHE
14
n
14
PHE
14
A
GLU
15
n
15
GLU
15
A
SER
16
n
16
SER
16
A
HIS
17
n
17
HIS
17
A
VAL
18
n
18
VAL
18
A
ALA
19
n
19
ALA
19
A
ARG
20
n
20
ARG
20
A
ALA
21
n
21
ALA
21
A
ASN
22
n
22
ASN
22
A
VAL
23
n
23
VAL
23
A
LYS
24
n
24
LYS
24
A
HIS
25
n
25
HIS
25
A
LEU
26
n
26
LEU
26
A
LYS
27
n
27
LYS
27
A
ILE
28
n
28
ILE
28
A
LEU
29
n
29
LEU
29
A
ASN
30
n
30
ASN
30
A
THR
31
n
31
THR
31
A
PRO
32
n
32
PRO
32
A
ALA
33
n
33
ALA
33
A
CYS
34
n
34
CYS
34
A
ALA
35
n
35
ALA
35
A
LEU
36
n
36
LEU
36
A
GLN
37
n
37
GLN
37
A
ILE
38
n
38
ILE
38
A
VAL
39
n
39
VAL
39
A
ALA
40
n
40
ALA
40
A
ARG
41
n
41
ARG
41
A
LEU
42
n
42
LEU
42
A
LYS
43
n
43
LYS
43
A
ASN
44
n
44
ASN
44
A
ASN
45
n
45
ASN
45
A
ASN
46
n
46
ASN
46
A
ARG
47
n
47
ARG
47
A
GLN
48
n
48
GLN
48
A
VAL
49
n
49
VAL
49
A
CYS
50
n
50
CYS
50
A
ILE
51
n
51
ILE
51
A
ASP
52
n
52
ASP
52
A
PRO
53
n
53
PRO
53
A
LYS
54
n
54
LYS
54
A
LEU
55
n
55
LEU
55
A
LYS
56
n
56
LYS
56
A
TRP
57
n
57
TRP
57
A
ILE
58
n
58
ILE
58
A
GLN
59
n
59
GLN
59
A
GLU
60
n
60
GLU
60
A
TYR
61
n
61
TYR
61
A
LEU
62
n
62
LEU
62
A
GLU
63
n
63
GLU
63
A
LYS
64
n
64
LYS
64
A
ALA
65
n
65
ALA
65
A
LEU
66
n
66
LEU
66
A
ASN
67
n
67
ASN
67
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
ARG
8
n
8
ARG
8
B
CYS
9
n
9
CYS
9
B
PRO
10
n
10
PRO
10
B
CYS
11
n
11
CYS
11
B
ARG
12
n
12
ARG
12
B
PHE
13
n
13
PHE
13
B
PHE
14
n
14
PHE
14
B
GLU
15
n
15
GLU
15
B
SER
16
n
16
SER
16
B
HIS
17
n
17
HIS
17
B
VAL
18
n
18
VAL
18
B
ALA
19
n
19
ALA
19
B
ARG
20
n
20
ARG
20
B
ALA
21
n
21
ALA
21
B
ASN
22
n
22
ASN
22
B
VAL
23
n
23
VAL
23
B
LYS
24
n
24
LYS
24
B
HIS
25
n
25
HIS
25
B
LEU
26
n
26
LEU
26
B
LYS
27
n
27
LYS
27
B
ILE
28
n
28
ILE
28
B
LEU
29
n
29
LEU
29
B
ASN
30
n
30
ASN
30
B
THR
31
n
31
THR
31
B
PRO
32
n
32
PRO
32
B
ALA
33
n
33
ALA
33
B
CYS
34
n
34
CYS
34
B
ALA
35
n
35
ALA
35
B
LEU
36
n
36
LEU
36
B
GLN
37
n
37
GLN
37
B
ILE
38
n
38
ILE
38
B
VAL
39
n
39
VAL
39
B
ALA
40
n
40
ALA
40
B
ARG
41
n
41
ARG
41
B
LEU
42
n
42
LEU
42
B
LYS
43
n
43
LYS
43
B
ASN
44
n
44
ASN
44
B
ASN
45
n
45
ASN
45
B
ASN
46
n
46
ASN
46
B
ARG
47
n
47
ARG
47
B
GLN
48
n
48
GLN
48
B
VAL
49
n
49
VAL
49
B
CYS
50
n
50
CYS
50
B
ILE
51
n
51
ILE
51
B
ASP
52
n
52
ASP
52
B
PRO
53
n
53
PRO
53
B
LYS
54
n
54
LYS
54
B
LEU
55
n
55
LEU
55
B
LYS
56
n
56
LYS
56
B
TRP
57
n
57
TRP
57
B
ILE
58
n
58
ILE
58
B
GLN
59
n
59
GLN
59
B
GLU
60
n
60
GLU
60
B
TYR
61
n
61
TYR
61
B
LEU
62
n
62
LEU
62
B
GLU
63
n
63
GLU
63
B
LYS
64
n
64
LYS
64
B
n
65
65
B
n
66
66
B
n
67
67
B
author_and_software_defined_assembly
PISA
2
dimeric
1640
-19
8170
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
49
A
O
VAL
49
A
N
ALA
40
A
N
ALA
40
A
O
ALA
35
A
O
ALA
35
A
N
THR
31
A
N
THR
31
B
O
VAL
49
B
O
VAL
49
B
N
ALA
40
B
N
ALA
40
B
O
VAL
39
B
O
VAL
39
B
N
LYS
27
B
N
LYS
27
1
A
CG1
VAL
3
A
CG1
VAL
3
1
Y
1
A
CG2
VAL
3
A
CG2
VAL
3
1
Y
1
A
CG
ARG
8
A
CG
ARG
8
1
Y
1
A
CD
ARG
8
A
CD
ARG
8
1
Y
1
A
NE
ARG
8
A
NE
ARG
8
1
Y
1
A
CZ
ARG
8
A
CZ
ARG
8
1
Y
1
A
NH1
ARG
8
A
NH1
ARG
8
1
Y
1
A
NH2
ARG
8
A
NH2
ARG
8
1
Y
1
A
CG
ASN
67
A
CG
ASN
67
1
Y
1
A
OD1
ASN
67
A
OD1
ASN
67
1
Y
1
A
ND2
ASN
67
A
ND2
ASN
67
1
Y
1
B
CG
ARG
8
B
CG
ARG
8
1
Y
1
B
CD
ARG
8
B
CD
ARG
8
1
Y
1
B
NE
ARG
8
B
NE
ARG
8
1
Y
1
B
CZ
ARG
8
B
CZ
ARG
8
1
Y
1
B
NH1
ARG
8
B
NH1
ARG
8
1
Y
1
B
NH2
ARG
8
B
NH2
ARG
8
1
Y
1
B
CG
GLU
63
B
CG
GLU
63
1
Y
1
B
CD
GLU
63
B
CD
GLU
63
1
Y
1
B
OE1
GLU
63
B
OE1
GLU
63
1
Y
1
B
OE2
GLU
63
B
OE2
GLU
63
1
Y
1
B
CG
LYS
64
B
CG
LYS
64
1
Y
1
B
CD
LYS
64
B
CD
LYS
64
1
Y
1
B
CE
LYS
64
B
CE
LYS
64
1
Y
1
B
NZ
LYS
64
B
NZ
LYS
64
1
Y
1
B
LYS
1
B
LYS
1
1
Y
1
B
PRO
2
B
PRO
2
1
Y
1
B
VAL
3
B
VAL
3
1
Y
1
B
SER
4
B
SER
4
1
Y
1
B
LEU
5
B
LEU
5
1
Y
1
B
SER
6
B
SER
6
1
Y
1
B
TYR
7
B
TYR
7
1
Y
1
B
ALA
65
B
ALA
65
1
Y
1
B
LEU
66
B
LEU
66
1
Y
1
B
ASN
67
B
ASN
67
1
Y
1
A
A
O
OG
VAL
SER
3
6
1.85
1
B
LEU
62
-19.17
1
A
A
C
N
PRO
VAL
2
3
1.04
1
A
A
C
N
VAL
SER
3
4
1.98
1
A
A
C
N
TYR
ARG
7
8
1.60
1
-16.63
2.20
117.20
100.57
B
B
B
CA
C
N
LEU
LEU
GLU
62
62
63
Y
1
21.64
2.70
111.00
132.64
B
B
B
N
CA
C
GLU
GLU
GLU
63
63
63
N
1
A
A
C
N
PRO
VAL
2
3
-0.296
0.023
1.336
1.040
Y
1
A
A
C
N
TYR
ARG
7
8
0.265
0.023
1.336
1.601
Y
1
B
B
C
N
LEU
GLU
62
63
0.243
0.023
1.336
1.579
Y
1
A
SER
6
-140.18
-25.53
1
A
TYR
7
-108.99
78.48
1
A
ALA
35
64.00
-166.93
1
A
ASN
46
58.69
18.91
1
A
LYS
54
-69.32
4.04
1
B
ALA
33
104.45
-26.08
1
B
ASN
44
70.19
-41.17
1
B
GLU
63
26.59
157.57
BULK SOLVENT CORRECTION WAS USED DURING SLOWCOOL AND POSITIONAL REFINEMENT IN XPLOR BETWEEN 25-2.2 ANGSTROM RESOLUTION.
0.298
0.233
0.233
2.2
5
575
5753
10
95
RANDOM
1
THROUGHOUT
3
MULTIPLE ISOMORPHOUS REPLACEMENT WITH ANOMALOUS SCATTERING (MIRAS)
5
0.2
2.2
5
64
1059
5
0
990
0.006
1.4
26.7
1.2
0.3
0.26
2.3
52
85
8
9
92
13.9
2.2
25
1A15
8725
0
0.046
1
9.3
2.7
97.6
0.087
2.2
2.24
3.1
2.7
99
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
3.843
refinement
X-PLOR
3.843
phasing
X-PLOR
3.843
SDF-1ALPHA
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
A
ARG
20
A
ARG
20
HELX_P
A
ASN
22
A
ASN
22
5
1
3
A
TRP
57
A
TRP
57
HELX_P
A
LYS
64
A
LYS
64
1
2
8
B
ARG
20
B
ARG
20
HELX_P
B
ASN
22
B
ASN
22
5
3
3
B
ILE
58
B
ILE
58
HELX_P
B
TYR
61
B
TYR
61
1
4
4
disulf
2.389
A
CYS
9
A
SG
CYS
9
1_555
A
CYS
34
A
SG
CYS
34
1_555
disulf
2.350
A
CYS
11
A
SG
CYS
11
1_555
A
CYS
50
A
SG
CYS
50
1_555
disulf
2.386
B
CYS
9
B
SG
CYS
9
1_555
B
CYS
34
B
SG
CYS
34
1_555
disulf
2.347
B
CYS
11
B
SG
CYS
11
1_555
B
CYS
50
B
SG
CYS
50
1_555
CHEMOKINE
CHEMOKINE, HUMAN STROMAL CELL-DERIVED FACTOR-1ALPHA
SDF1_HUMAN
UNP
1
1
P48061
MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQ
EYLEKALNKRFKM
22
88
1A15
1
67
P48061
A
1
1
67
22
88
1A15
1
67
P48061
B
1
1
67
1
ASN
engineered mutation
ALA
33
1A15
A
P48061
UNP
54
33
2
ASN
engineered mutation
ALA
33
1A15
B
P48061
UNP
54
33
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
48
A
GLN
48
A
ILE
51
A
ILE
51
A
ALA
35
A
ALA
35
A
LEU
42
A
LEU
42
A
VAL
23
A
VAL
23
A
THR
31
A
THR
31
B
GLN
48
B
GLN
48
B
CYS
50
B
CYS
50
B
ILE
38
B
ILE
38
B
LEU
42
B
LEU
42
B
VAL
23
B
VAL
23
B
ILE
28
B
ILE
28
BINDING SITE FOR RESIDUE SO4 A 0
A
SO4
0
Software
7
A
ALA
19
A
ALA
19
7
1_555
A
ARG
20
A
ARG
20
7
1_555
A
ALA
21
A
ALA
21
7
1_555
A
HOH
82
D
HOH
7
1_555
A
HOH
84
D
HOH
7
1_555
B
LYS
24
B
LYS
24
7
2_465
B
ASN
46
B
ASN
46
7
2_465
19
P 21 21 21