1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Krapp, S. Kelly, G. Reischl, J. Weinzierl, R. Matthews, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 S C N 142 N C N 143 N C N 144 N C N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 N C N 164 N C N 165 N C N 166 N C N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N S N 213 N C N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C Y 231 N C Y 232 N C Y 233 N C Y 234 N C Y 235 N C Y 236 N C N 237 N O N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 N C N 254 N C N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C N 271 N O N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 R C N 285 N O N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C Y 302 N C Y 303 N C Y 304 N C Y 305 N N Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing Y 225 N doub Y 226 N sing Y 227 N sing N 228 N sing Y 229 N doub N 230 N sing Y 231 N doub N 232 N sing Y 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing Y 294 N doub Y 295 N sing Y 296 N sing N 297 N sing Y 298 N doub Y 299 N sing Y 300 N sing N 301 N sing Y 302 N sing Y 303 N doub N 304 N sing Y 305 N doub N 306 N sing Y 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing Y 322 N doub Y 323 N sing Y 324 N sing N 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 5 110 114 10.1038/nsb0298-110 9461075 Eukaryotic RNA polymerase subunit RPB8 is a new relative of the OB family. 1998 10.2210/pdb1a1d/pdb pdb_00001a1d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 16525.363 RNA POLYMERASE 2.7.7.6 SUBUNIT RPB8 1 man polymer no no MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATRSWR PPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATRSWR PPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia Escherichia coli sample 4932 Saccharomyces cerevisiae 511693 Escherichia coli BL21 BL21 chem_comp_atom chem_comp_bond database_2 pdbx_database_status repository Initial release Version format compliance Version format compliance Data collection Database references Other 1 0 1999-03-02 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-04-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site CA ATOMS ONLY Y BNL 1997-12-10 REL 50 1 6.3 298 K simulated annealing D2O BRUNGER refinement X-PLOR 500 Bruker DRX500 MET 1 n 1 MET 1 A SER 2 n 2 SER 2 A ASN 3 n 3 ASN 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A PHE 6 n 6 PHE 6 A ASP 7 n 7 ASP 7 A ASP 8 n 8 ASP 8 A ILE 9 n 9 ILE 9 A PHE 10 n 10 PHE 10 A GLN 11 n 11 GLN 11 A VAL 12 n 12 VAL 12 A SER 13 n 13 SER 13 A GLU 14 n 14 GLU 14 A VAL 15 n 15 VAL 15 A ASP 16 n 16 ASP 16 A PRO 17 n 17 PRO 17 A GLY 18 n 18 GLY 18 A ARG 19 n 19 ARG 19 A TYR 20 n 20 TYR 20 A ASN 21 n 21 ASN 21 A LYS 22 n 22 LYS 22 A VAL 23 n 23 VAL 23 A CYS 24 n 24 CYS 24 A ARG 25 n 25 ARG 25 A ILE 26 n 26 ILE 26 A GLU 27 n 27 GLU 27 A ALA 28 n 28 ALA 28 A ALA 29 n 29 ALA 29 A SER 30 n 30 SER 30 A THR 31 n 31 THR 31 A THR 32 n 32 THR 32 A GLN 33 n 33 GLN 33 A ASP 34 n 34 ASP 34 A GLN 35 n 35 GLN 35 A CYS 36 n 36 CYS 36 A LYS 37 n 37 LYS 37 A LEU 38 n 38 LEU 38 A THR 39 n 39 THR 39 A LEU 40 n 40 LEU 40 A ASP 41 n 41 ASP 41 A ILE 42 n 42 ILE 42 A ASN 43 n 43 ASN 43 A VAL 44 n 44 VAL 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A PHE 47 n 47 PHE 47 A PRO 48 n 48 PRO 48 A VAL 49 n 49 VAL 49 A ALA 50 n 50 ALA 50 A ALA 51 n 51 ALA 51 A GLN 52 n 52 GLN 52 A ASP 53 n 53 ASP 53 A SER 54 n 54 SER 54 A LEU 55 n 55 LEU 55 A THR 56 n 56 THR 56 A VAL 57 n 57 VAL 57 A THR 58 n 58 THR 58 A ILE 59 n 59 ILE 59 A ALA 60 n 60 ALA 60 A SER 61 n 61 SER 61 A SER 62 n 62 SER 62 A LEU 63 n 63 LEU 63 A ASN 64 n 64 ASN 64 A LEU 65 n 65 LEU 65 A GLU 66 n 66 GLU 66 A ASP 67 n 67 ASP 67 A THR 68 n 68 THR 68 A PRO 69 n 69 PRO 69 A ALA 70 n 70 ALA 70 A ASN 71 n 71 ASN 71 A ASP 72 n 72 ASP 72 A SER 73 n 73 SER 73 A SER 74 n 74 SER 74 A ALA 75 n 75 ALA 75 A THR 76 n 76 THR 76 A ARG 77 n 77 ARG 77 A SER 78 n 78 SER 78 A TRP 79 n 79 TRP 79 A ARG 80 n 80 ARG 80 A PRO 81 n 81 PRO 81 A PRO 82 n 82 PRO 82 A GLN 83 n 83 GLN 83 A ALA 84 n 84 ALA 84 A GLY 85 n 85 GLY 85 A ASP 86 n 86 ASP 86 A ARG 87 n 87 ARG 87 A SER 88 n 88 SER 88 A LEU 89 n 89 LEU 89 A ALA 90 n 90 ALA 90 A ASP 91 n 91 ASP 91 A ASP 92 n 92 ASP 92 A TYR 93 n 93 TYR 93 A ASP 94 n 94 ASP 94 A TYR 95 n 95 TYR 95 A VAL 96 n 96 VAL 96 A MET 97 n 97 MET 97 A TYR 98 n 98 TYR 98 A GLY 99 n 99 GLY 99 A THR 100 n 100 THR 100 A ALA 101 n 101 ALA 101 A TYR 102 n 102 TYR 102 A LYS 103 n 103 LYS 103 A PHE 104 n 104 PHE 104 A GLU 105 n 105 GLU 105 A GLU 106 n 106 GLU 106 A VAL 107 n 107 VAL 107 A SER 108 n 108 SER 108 A LYS 109 n 109 LYS 109 A ASP 110 n 110 ASP 110 A LEU 111 n 111 LEU 111 A ILE 112 n 112 ILE 112 A ALA 113 n 113 ALA 113 A VAL 114 n 114 VAL 114 A TYR 115 n 115 TYR 115 A TYR 116 n 116 TYR 116 A SER 117 n 117 SER 117 A PHE 118 n 118 PHE 118 A GLY 119 n 119 GLY 119 A GLY 120 n 120 GLY 120 A LEU 121 n 121 LEU 121 A LEU 122 n 122 LEU 122 A MET 123 n 123 MET 123 A ARG 124 n 124 ARG 124 A LEU 125 n 125 LEU 125 A GLU 126 n 126 GLU 126 A GLY 127 n 127 GLY 127 A ASN 128 n 128 ASN 128 A TYR 129 n 129 TYR 129 A ARG 130 n 130 ARG 130 A ASN 131 n 131 ASN 131 A LEU 132 n 132 LEU 132 A ASN 133 n 133 ASN 133 A ASN 134 n 134 ASN 134 A LEU 135 n 135 LEU 135 A LYS 136 n 136 LYS 136 A GLN 137 n 137 GLN 137 A GLU 138 n 138 GLU 138 A ASN 139 n 139 ASN 139 A ALA 140 n 140 ALA 140 A TYR 141 n 141 TYR 141 A LEU 142 n 142 LEU 142 A LEU 143 n 143 LEU 143 A ILE 144 n 144 ILE 144 A ARG 145 n 145 ARG 145 A ARG 146 n 146 ARG 146 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 model building X-PLOR refinement X-PLOR phasing X-PLOR YEAST RNA POLYMERASE SUBUNIT RPB8, NMR, MINIMIZED AVERAGE STRUCTURE, ALPHA CARBONS ONLY 1 Y N A LEU 63 A LEU 63 HELX_P A LEU 65 A LEU 65 5 1 3 A ALA 90 A ALA 90 HELX_P A TYR 93 A TYR 93 1 2 4 A ARG 130 A ARG 130 HELX_P A LEU 132 A LEU 132 5 3 3 NUCLEOTIDYLTRANSFERASE RPB8, RNA POLYMERASE, OB FOLD, EUKARYOTIC, YEAST, NUCLEOTIDYLTRANSFERASE RPB8_YEAST UNP 1 1 P20436 MSNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATRSWR PPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR 1 146 1A1D 1 146 P20436 A 1 1 146 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 7 A ASP 7 A PHE 10 A PHE 10 A LEU 55 A LEU 55 A THR 58 A THR 58 A TYR 141 A TYR 141 A ILE 144 A ILE 144 A TYR 95 A TYR 95 A TYR 98 A TYR 98 A CYS 24 A CYS 24 A ALA 29 A ALA 29 A LYS 37 A LYS 37 A ILE 42 A ILE 42 A LEU 122 A LEU 122 A GLY 127 A GLY 127 A ILE 112 A ILE 112 A SER 117 A SER 117 1 P 1