0.023256
0.000000
0.000000
0.000000
0.017889
0.000000
0.000000
0.000000
0.007788
0.00000
0.00000
0.00000
Elrod-Erickson, M.
Benson, T.E.
Pabo, C.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
43.000
55.900
128.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
Structure
STRUE6
2005
0969-2126
6
451
464
10.1016/S0969-2126(98)00047-1
9562555
High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition.
1998
UK
Structure
STRUE6
2005
0969-2126
4
1171
Zif268 Protein-DNA Complex Refined at 1.6 A: A Model System for Understanding Zinc Finger-DNA Interactions
1996
US
Science
SCIEAS
0038
0036-8075
263
671
Zinc Finger Phage: Affinity Selection of Fingers with New DNA-Binding Specificities
1994
US
Science
SCIEAS
0038
0036-8075
252
809
Zinc Finger-DNA Recognition: Crystal Structure of a Zif268-DNA Complex at 2.1 A
1991
10.2210/pdb1a1f/pdb
pdb_00001a1f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
130
1
YALE MIRRORS
IMAGE PLATE
1995-11
RIGAKU RAXIS IIC
YALE MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
3399.223
DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3')
1
syn
polymer
3310.161
DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3')
1
syn
polymer
10768.371
THREE-FINGER ZIF268 PEPTIDE
1
man
polymer
65.409
ZINC ION
3
syn
non-polymer
18.015
water
88
nat
water
no
no
(DA)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(DA)(DC)(DC)
AGCGTGGGACC
B
polydeoxyribonucleotide
no
no
(DT)(DG)(DG)(DT)(DC)(DC)(DC)(DA)(DC)(DG)(DC)
TGGTCCCACGC
C
polydeoxyribonucleotide
no
no
MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR
HTKIHLRQKD
MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR
HTKIHLRQKD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PDSNR
1
2.17
43.29
VAPOR DIFFUSION, HANGING DROP
7.5
20% PEG 400, 200MM MGCL2, 100 MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP
WATER
1
NACL
1
MES
1
PRECIPITATING SOLUTION
1
WATER
2
NACL
2
TRIS
2
PEG 3350
2
-19.334
1
19
B
2
C
61
2.781
B_DG2:DC61_C
1
1.275
-0.376
-0.621
0.176
12.278
1
19
B
3
C
60
2.905
B_DC3:DG60_C
2
3.419
0.600
-0.451
-0.196
-6.077
1
19
B
4
C
59
-2.218
B_DG4:DC59_C
3
-4.705
-0.465
-0.174
0.049
11.043
1
20
B
5
C
58
1.083
B_DT5:DA58_C
4
-2.887
0.251
-0.417
0.081
-9.152
1
19
B
6
C
57
1.659
B_DG6:DC57_C
5
1.222
-0.645
-0.712
-0.002
-6.851
1
19
B
7
C
56
-1.833
B_DG7:DC56_C
6
-8.881
-0.361
-0.341
-0.056
-0.921
1
19
B
8
C
55
-3.202
B_DG8:DC55_C
7
-5.084
-0.480
-0.079
-0.047
13.331
1
20
B
9
C
54
2.300
B_DA9:DT54_C
8
-10.124
0.189
0.292
0.170
8.214
1
19
B
10
C
53
3.434
B_DC10:DG53_C
9
-13.142
0.129
0.135
-0.054
4.405
1
19
B
11
C
52
6.731
B_DC11:DG52_C
10
-2.698
0.231
-0.663
-0.151
2.501
27.867
B
B
2
3
13.150
C
C
61
60
2.598
6.273
0.442
0.062
BB_DG2DC3:DG60DC61_CC
1
-2.379
4.988
27.063
-1.057
-1.368
3.507
34.134
B
B
3
4
18.028
C
C
60
59
3.628
10.395
-1.074
-0.206
BB_DC3DG4:DC59DG60_CC
2
-4.307
7.469
32.279
-2.201
1.063
2.953
32.198
B
B
4
5
0.084
C
C
59
58
2.939
0.046
0.763
-0.669
BB_DG4DT5:DA58DC59_CC
3
0.674
-1.215
32.191
-1.214
-1.268
3.584
35.766
B
B
5
6
17.118
C
C
58
57
3.790
10.371
-0.381
-0.215
BB_DT5DG6:DC57DA58_CC
4
-0.829
1.368
34.267
-2.073
0.483
3.176
30.733
B
B
6
7
10.945
C
C
57
56
3.287
5.749
-0.966
-0.863
BB_DG6DG7:DC56DC57_CC
5
-4.345
8.271
29.896
-2.758
0.969
3.059
35.780
B
B
7
8
7.532
C
C
56
55
3.092
4.603
-0.618
-0.503
BB_DG7DG8:DC55DC56_CC
6
-4.728
7.737
35.186
-1.447
0.361
2.846
34.252
B
B
8
9
2.281
C
C
55
54
2.922
1.342
0.784
-0.463
BB_DG8DA9:DT54DC55_CC
7
-2.259
3.839
34.154
-0.972
-1.645
3.477
32.583
B
B
9
10
-1.265
C
C
54
53
3.462
-0.710
0.618
-1.202
BB_DA9DC10:DG53DT54_CC
8
-0.489
0.871
32.572
-2.012
-1.192
3.073
27.536
B
B
10
11
6.161
C
C
53
52
3.394
2.900
-0.696
-0.411
BB_DC10DC11:DG52DG53_CC
9
6.605
-14.033
26.592
-1.579
3.089
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1998-06-10
1
1
2008-05-22
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1997-12-10
REL
ZN
ZINC ION
HOH
water
1AAY
PDB ENTRY 1AAY, WITHOUT WATERS AND WITHOUT SIDE CHAINS FOR RESIDUES 18 - 24
PDB
experimental model
ZN
201
4
ZN
ZN
201
A
ZN
202
4
ZN
ZN
202
A
ZN
203
4
ZN
ZN
203
A
HOH
315
5
HOH
HOH
315
B
HOH
318
5
HOH
HOH
318
B
HOH
322
5
HOH
HOH
322
B
HOH
324
5
HOH
HOH
324
B
HOH
325
5
HOH
HOH
325
B
HOH
326
5
HOH
HOH
326
B
HOH
334
5
HOH
HOH
334
B
HOH
335
5
HOH
HOH
335
B
HOH
336
5
HOH
HOH
336
B
HOH
340
5
HOH
HOH
340
B
HOH
345
5
HOH
HOH
345
B
HOH
355
5
HOH
HOH
355
B
HOH
365
5
HOH
HOH
365
B
HOH
366
5
HOH
HOH
366
B
HOH
375
5
HOH
HOH
375
B
HOH
379
5
HOH
HOH
379
B
HOH
380
5
HOH
HOH
380
B
HOH
381
5
HOH
HOH
381
B
HOH
382
5
HOH
HOH
382
B
HOH
383
5
HOH
HOH
383
B
HOH
384
5
HOH
HOH
384
B
HOH
385
5
HOH
HOH
385
B
HOH
388
5
HOH
HOH
388
B
HOH
330
5
HOH
HOH
330
C
HOH
331
5
HOH
HOH
331
C
HOH
332
5
HOH
HOH
332
C
HOH
333
5
HOH
HOH
333
C
HOH
337
5
HOH
HOH
337
C
HOH
338
5
HOH
HOH
338
C
HOH
339
5
HOH
HOH
339
C
HOH
341
5
HOH
HOH
341
C
HOH
342
5
HOH
HOH
342
C
HOH
346
5
HOH
HOH
346
C
HOH
349
5
HOH
HOH
349
C
HOH
350
5
HOH
HOH
350
C
HOH
351
5
HOH
HOH
351
C
HOH
356
5
HOH
HOH
356
C
HOH
360
5
HOH
HOH
360
C
HOH
361
5
HOH
HOH
361
C
HOH
362
5
HOH
HOH
362
C
HOH
363
5
HOH
HOH
363
C
HOH
364
5
HOH
HOH
364
C
HOH
367
5
HOH
HOH
367
C
HOH
369
5
HOH
HOH
369
C
HOH
301
5
HOH
HOH
301
A
HOH
302
5
HOH
HOH
302
A
HOH
303
5
HOH
HOH
303
A
HOH
304
5
HOH
HOH
304
A
HOH
305
5
HOH
HOH
305
A
HOH
306
5
HOH
HOH
306
A
HOH
307
5
HOH
HOH
307
A
HOH
308
5
HOH
HOH
308
A
HOH
309
5
HOH
HOH
309
A
HOH
310
5
HOH
HOH
310
A
HOH
311
5
HOH
HOH
311
A
HOH
312
5
HOH
HOH
312
A
HOH
313
5
HOH
HOH
313
A
HOH
314
5
HOH
HOH
314
A
HOH
316
5
HOH
HOH
316
A
HOH
317
5
HOH
HOH
317
A
HOH
319
5
HOH
HOH
319
A
HOH
320
5
HOH
HOH
320
A
HOH
321
5
HOH
HOH
321
A
HOH
323
5
HOH
HOH
323
A
HOH
327
5
HOH
HOH
327
A
HOH
328
5
HOH
HOH
328
A
HOH
329
5
HOH
HOH
329
A
HOH
343
5
HOH
HOH
343
A
HOH
344
5
HOH
HOH
344
A
HOH
347
5
HOH
HOH
347
A
HOH
348
5
HOH
HOH
348
A
HOH
352
5
HOH
HOH
352
A
HOH
353
5
HOH
HOH
353
A
HOH
354
5
HOH
HOH
354
A
HOH
357
5
HOH
HOH
357
A
HOH
358
5
HOH
HOH
358
A
HOH
359
5
HOH
HOH
359
A
HOH
368
5
HOH
HOH
368
A
HOH
370
5
HOH
HOH
370
A
HOH
371
5
HOH
HOH
371
A
HOH
372
5
HOH
HOH
372
A
HOH
373
5
HOH
HOH
373
A
HOH
374
5
HOH
HOH
374
A
HOH
376
5
HOH
HOH
376
A
HOH
377
5
HOH
HOH
377
A
HOH
378
5
HOH
HOH
378
A
HOH
386
5
HOH
HOH
386
A
HOH
387
5
HOH
HOH
387
A
A
1
n
1
DA
1
B
G
2
n
2
DG
2
B
C
3
n
3
DC
3
B
G
4
n
4
DG
4
B
T
5
n
5
DT
5
B
G
6
n
6
DG
6
B
G
7
n
7
DG
7
B
G
8
n
8
DG
8
B
A
9
n
9
DA
9
B
C
10
n
10
DC
10
B
C
11
n
11
DC
11
B
T
51
n
1
DT
51
C
G
52
n
2
DG
52
C
G
53
n
3
DG
53
C
T
54
n
4
DT
54
C
C
55
n
5
DC
55
C
C
56
n
6
DC
56
C
C
57
n
7
DC
57
C
A
58
n
8
DA
58
C
C
59
n
9
DC
59
C
G
60
n
10
DG
60
C
C
61
n
11
DC
61
C
n
1
101
A
n
2
102
A
ARG
103
n
3
ARG
103
A
PRO
104
n
4
PRO
104
A
TYR
105
n
5
TYR
105
A
ALA
106
n
6
ALA
106
A
CYS
107
n
7
CYS
107
A
PRO
108
n
8
PRO
108
A
VAL
109
n
9
VAL
109
A
GLU
110
n
10
GLU
110
A
SER
111
n
11
SER
111
A
CYS
112
n
12
CYS
112
A
ASP
113
n
13
ASP
113
A
ARG
114
n
14
ARG
114
A
ARG
115
n
15
ARG
115
A
PHE
116
n
16
PHE
116
A
SER
117
n
17
SER
117
A
ASP
118
n
18
ASP
118
A
SER
119
n
19
SER
119
A
SER
120
n
20
SER
120
A
ASN
121
n
21
ASN
121
A
LEU
122
n
22
LEU
122
A
THR
123
n
23
THR
123
A
ARG
124
n
24
ARG
124
A
HIS
125
n
25
HIS
125
A
ILE
126
n
26
ILE
126
A
ARG
127
n
27
ARG
127
A
ILE
128
n
28
ILE
128
A
HIS
129
n
29
HIS
129
A
THR
130
n
30
THR
130
A
GLY
131
n
31
GLY
131
A
GLN
132
n
32
GLN
132
A
LYS
133
n
33
LYS
133
A
PRO
134
n
34
PRO
134
A
PHE
135
n
35
PHE
135
A
GLN
136
n
36
GLN
136
A
CYS
137
n
37
CYS
137
A
ARG
138
n
38
ARG
138
A
ILE
139
n
39
ILE
139
A
CYS
140
n
40
CYS
140
A
MET
141
n
41
MET
141
A
ARG
142
n
42
ARG
142
A
ASN
143
n
43
ASN
143
A
PHE
144
n
44
PHE
144
A
SER
145
n
45
SER
145
A
ARG
146
n
46
ARG
146
A
SER
147
n
47
SER
147
A
ASP
148
n
48
ASP
148
A
HIS
149
n
49
HIS
149
A
LEU
150
n
50
LEU
150
A
THR
151
n
51
THR
151
A
THR
152
n
52
THR
152
A
HIS
153
n
53
HIS
153
A
ILE
154
n
54
ILE
154
A
ARG
155
n
55
ARG
155
A
THR
156
n
56
THR
156
A
HIS
157
n
57
HIS
157
A
THR
158
n
58
THR
158
A
GLY
159
n
59
GLY
159
A
GLU
160
n
60
GLU
160
A
LYS
161
n
61
LYS
161
A
PRO
162
n
62
PRO
162
A
PHE
163
n
63
PHE
163
A
ALA
164
n
64
ALA
164
A
CYS
165
n
65
CYS
165
A
ASP
166
n
66
ASP
166
A
ILE
167
n
67
ILE
167
A
CYS
168
n
68
CYS
168
A
GLY
169
n
69
GLY
169
A
ARG
170
n
70
ARG
170
A
LYS
171
n
71
LYS
171
A
PHE
172
n
72
PHE
172
A
ALA
173
n
73
ALA
173
A
ARG
174
n
74
ARG
174
A
SER
175
n
75
SER
175
A
ASP
176
n
76
ASP
176
A
GLU
177
n
77
GLU
177
A
ARG
178
n
78
ARG
178
A
LYS
179
n
79
LYS
179
A
ARG
180
n
80
ARG
180
A
HIS
181
n
81
HIS
181
A
THR
182
n
82
THR
182
A
LYS
183
n
83
LYS
183
A
ILE
184
n
84
ILE
184
A
HIS
185
n
85
HIS
185
A
LEU
186
n
86
LEU
186
A
n
87
187
A
n
88
188
A
n
89
189
A
n
90
190
A
author_defined_assembly
3
trimeric
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
A
CYS
112
C
SG
CYS
12
1_555
132.1
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
125
C
NE2
HIS
25
1_555
109.4
A
CYS
112
C
SG
CYS
12
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
125
C
NE2
HIS
25
1_555
105.5
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
129
C
NE2
HIS
29
1_555
107.1
A
CYS
112
C
SG
CYS
12
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
129
C
NE2
HIS
29
1_555
104.8
A
HIS
125
C
NE2
HIS
25
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
129
C
NE2
HIS
29
1_555
89.7
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
A
CYS
140
C
SG
CYS
40
1_555
119.3
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
153
C
NE2
HIS
53
1_555
108.3
A
CYS
140
C
SG
CYS
40
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
153
C
NE2
HIS
53
1_555
100.8
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
157
C
NE2
HIS
57
1_555
110.7
A
CYS
140
C
SG
CYS
40
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
157
C
NE2
HIS
57
1_555
115.4
A
HIS
153
C
NE2
HIS
53
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
157
C
NE2
HIS
57
1_555
99.5
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
A
CYS
168
C
SG
CYS
68
1_555
119.2
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
181
C
NE2
HIS
81
1_555
107.9
A
CYS
168
C
SG
CYS
68
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
181
C
NE2
HIS
81
1_555
103.3
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
185
C
NE2
HIS
85
1_555
107.4
A
CYS
168
C
SG
CYS
68
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
185
C
NE2
HIS
85
1_555
115.6
A
HIS
181
C
NE2
HIS
81
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
185
C
NE2
HIS
85
1_555
101.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
105
C
O
TYR
5
A
N
PHE
116
C
N
PHE
16
A
O
PHE
135
C
O
PHE
35
A
N
PHE
144
C
N
PHE
44
A
O
PHE
163
C
O
PHE
63
A
N
PHE
172
C
N
PHE
72
1
A
MET
101
C
MET
1
1
Y
1
A
GLU
102
C
GLU
2
1
Y
1
A
ARG
187
C
ARG
87
1
Y
1
A
GLN
188
C
GLN
88
1
Y
1
A
LYS
189
C
LYS
89
1
Y
1
A
ASP
190
C
ASP
90
1
Y
1
A
GLU
110
-31.62
122.00
PARHCSDX.PRO
TOPHCSDX.PRO
PARNDBX.DNA
TOPNDBX.DNA
36.4
16.162
0.
0.
20.534
0.
4.332
RMS DEVIATIONS FROM IDEAL VALUES (DNA)
0.27
0.009
0.225
0.225
2.1
20.
893
8173
10.9
87.0
BASED ON 1AAY TEST SET
100000.
0.0
1
RESTRAINED INDIVIDUAL
THROUGHOUT
0.
ISOMORPHOUS MOLECULAR REPLACEMENT
PDB ENTRY 1AAY, WITHOUT WATERS AND WITHOUT SIDE CHAINS FOR RESIDUES 18 - 24
2.1
20.
88
1234
3
445
698
0.006
1.3
22.751
1.226
1.207
1.5
2.251
2.0
1.888
2.0
3.564
2.5
0.411
0.044
0.359
2.20
89
807
8
9.9
76.6
2.1
20.0
1A1F
8185
-2.
0.064
1
22.6
2.4
87.0
2.1
2.17
10.9
0.093
1.8
76.0
model building
X-PLOR
refinement
X-PLOR
3.8
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
SER
119
C
SER
19
HELX_P
A
THR
130
C
THR
30
1
1
12
A
SER
147
C
SER
47
HELX_P
A
THR
158
C
THR
58
1
2
12
A
SER
175
C
SER
75
HELX_P
A
HIS
185
C
HIS
85
1
3
11
metalc
2.101
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.700
A
CYS
112
C
SG
CYS
12
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.239
A
HIS
125
C
NE2
HIS
25
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.176
A
HIS
129
C
NE2
HIS
29
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.337
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.262
A
CYS
140
C
SG
CYS
40
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.078
A
HIS
153
C
NE2
HIS
53
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.082
A
HIS
157
C
NE2
HIS
57
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.248
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
metalc
2.232
A
CYS
168
C
SG
CYS
68
1_555
A
ZN
203
F
ZN
ZN
1_555
metalc
2.117
A
HIS
181
C
NE2
HIS
81
1_555
A
ZN
203
F
ZN
ZN
1_555
metalc
2.046
A
HIS
185
C
NE2
HIS
85
1_555
A
ZN
203
F
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DG
2
A
N1
DG
2
1_555
C
DC
61
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
A
N2
DG
2
1_555
C
DC
61
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
A
O6
DG
2
1_555
C
DC
61
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N3
DC
3
1_555
C
DG
60
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N4
DC
3
1_555
C
DG
60
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
A
O2
DC
3
1_555
C
DG
60
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
B
DG
4
A
N1
DG
4
1_555
C
DC
59
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
4
A
N2
DG
4
1_555
C
DC
59
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
4
A
O6
DG
4
1_555
C
DC
59
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DT
5
A
N3
DT
5
1_555
C
DA
58
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
B
DT
5
A
O4
DT
5
1_555
C
DA
58
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N1
DG
6
1_555
C
DC
57
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N2
DG
6
1_555
C
DC
57
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
6
A
O6
DG
6
1_555
C
DC
57
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N1
DG
7
1_555
C
DC
56
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N2
DG
7
1_555
C
DC
56
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
A
O6
DG
7
1_555
C
DC
56
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
8
A
N1
DG
8
1_555
C
DC
55
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
8
A
N2
DG
8
1_555
C
DC
55
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
8
A
O6
DG
8
1_555
C
DC
55
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
B
DA
9
A
N1
DA
9
1_555
C
DT
54
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
B
DA
9
A
N6
DA
9
1_555
C
DT
54
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
B
DC
10
A
N3
DC
10
1_555
C
DG
53
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
10
A
N4
DC
10
1_555
C
DG
53
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
10
A
O2
DC
10
1_555
C
DG
53
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
11
A
N3
DC
11
1_555
C
DG
52
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
11
A
N4
DC
11
1_555
C
DG
52
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
11
A
O2
DC
11
1_555
C
DG
52
B
N2
DG
2
1_555
TRANSCRIPTION/DNA
COMPLEX (ZINC FINGER-DNA), ZINC FINGER, DNA-BINDING PROTEIN, TRANSCRIPTION-DNA COMPLEX
EGR1_MOUSE
UNP
3
P08046
1A1F
PDB
1
1A1F
1A1F
PDB
2
1A1F
308
396
1A1F
102
190
P08046
A
1
2
90
1
11
1A1F
1
11
1A1F
B
2
1
11
51
61
1A1F
51
61
1A1F
C
3
1
11
1
ARG
variant
ASP
118
1A1F
A
P08046
UNP
324
18
1
ASP
variant
SER
120
1A1F
A
P08046
UNP
326
20
1
GLU
variant
ASN
121
1A1F
A
P08046
UNP
327
21
2
2
2
anti-parallel
anti-parallel
anti-parallel
A
TYR
105
C
TYR
5
A
ALA
106
C
ALA
6
A
ARG
115
C
ARG
15
A
PHE
116
C
PHE
16
A
PHE
135
C
PHE
35
A
GLN
136
C
GLN
36
A
ASN
143
C
ASN
43
A
PHE
144
C
PHE
44
A
PHE
163
C
PHE
63
A
ALA
164
C
ALA
64
A
LYS
171
C
LYS
71
A
PHE
172
C
PHE
72
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
4
BINDING SITE FOR RESIDUE ZN A 202
A
ZN
202
Software
4
BINDING SITE FOR RESIDUE ZN A 203
A
ZN
203
Software
4
A
CYS
107
C
CYS
7
4
1_555
A
CYS
112
C
CYS
12
4
1_555
A
HIS
125
C
HIS
25
4
1_555
A
HIS
129
C
HIS
29
4
1_555
A
CYS
137
C
CYS
37
4
1_555
A
CYS
140
C
CYS
40
4
1_555
A
HIS
153
C
HIS
53
4
1_555
A
HIS
157
C
HIS
57
4
1_555
A
CYS
165
C
CYS
65
4
1_555
A
CYS
168
C
CYS
68
4
1_555
A
HIS
181
C
HIS
81
4
1_555
A
HIS
185
C
HIS
85
4
1_555
20
orthorhombic
C 2 2 21