0.022676 0.000000 0.000000 0.000000 0.017889 0.000000 0.000000 0.000000 0.007663 0.00000 0.00000 0.00000 Elrod-Erickson, M. Benson, T.E. Pabo, C.O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 44.100 55.900 130.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 R C N 452 N O N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C N 475 N O N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N N N 489 S C N 490 N C N 491 N O N 492 N C N 493 N C N 494 N C N 495 N O N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing UK Structure STRUE6 2005 0969-2126 6 451 464 10.1016/S0969-2126(98)00047-1 9562555 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. 1998 UK Structure STRUE6 2005 0969-2126 4 1171 Zif268 Protein-DNA Complex Refined at 1.6 A: A Model System for Understanding Zinc Finger-DNA Interactions 1996 US Science SCIEAS 0038 0036-8075 263 671 673 Zinc Finger Phage: Affinity Selection of Fingers with New DNA-Binding Specificities 1994 US Science SCIEAS 0038 0036-8075 252 809 817 Zinc Finger-DNA Recognition: Crystal Structure of a Zif268-DNA Complex at 2.1 A 1991 10.2210/pdb1a1h/pdb pdb_00001a1h 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 130.00 1 YALE MIRRORS IMAGE PLATE 1995-06 RIGAKU RAXIS IIC YALE MIRRORS M x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 3399.223 DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3') 1 syn polymer 3310.161 DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') 1 syn polymer 10724.361 QGSR ZINC FINGER PEPTIDE 1 man polymer 65.409 ZINC ION 3 syn non-polymer 18.015 water 149 nat water no no (DA)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(DC)(DA)(DC) AGCGTGGGCAC B polydeoxyribonucleotide no no (DT)(DG)(DT)(DG)(DC)(DC)(DC)(DA)(DC)(DG)(DC) TGTGCCCACGC C polydeoxyribonucleotide no no MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR HTKIHLRQKD MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR HTKIHLRQKD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia Escherichia coli sample 10090 Mus musculus 469008 Escherichia coli BL21(DE3) BL21 (DE3) PQGSR 1 2.31 46.68 VAPOR DIFFUSION 8.5 27.5-35% PEG 3350, 0-200 MM NACL, 100 MM TRIS PH 8.5, VAPOR DIFFUSION WATER 1 NACL 1 MES 1 PRECIPITATING SOLUTION 1 WATER 2 NACL 2 TRIS 2 PEG 3350 -10.507 1 19 B 2 C 61 1.155 B_DG2:DC61_C 1 -4.870 -0.272 -0.233 0.062 7.630 1 19 B 3 C 60 1.842 B_DC3:DG60_C 2 -3.022 0.581 -0.355 -0.241 -8.229 1 19 B 4 C 59 0.842 B_DG4:DC59_C 3 -7.275 -0.528 -0.303 -0.349 6.679 1 20 B 5 C 58 5.936 B_DT5:DA58_C 4 1.563 0.123 -0.471 -0.203 6.583 1 19 B 6 C 57 1.298 B_DG6:DC57_C 5 -6.860 -0.541 0.161 -0.345 3.240 1 19 B 7 C 56 -2.460 B_DG7:DC56_C 6 -7.306 -0.186 -0.096 -0.075 -3.607 1 19 B 8 C 55 0.023 B_DG8:DC55_C 7 -8.722 -0.206 -0.129 -0.136 7.476 1 19 B 9 C 54 4.183 B_DC9:DG54_C 8 -2.135 0.274 -0.299 -0.056 6.594 1 20 B 10 C 53 2.164 B_DA10:DT53_C 9 -8.960 0.187 0.232 0.161 10.837 1 19 B 11 C 52 5.666 B_DC11:DG52_C 10 -6.879 0.337 -0.173 0.058 2.883 23.698 B B 2 3 9.631 C C 61 60 2.910 3.934 0.588 -0.135 BB_DG2DC3:DG60DC61_CC 1 1.715 -4.199 23.312 -1.492 -0.925 3.415 35.681 B B 3 4 19.237 C C 60 59 3.576 11.538 -0.874 -0.223 BB_DC3DG4:DC59DG60_CC 2 -5.678 9.467 33.353 -2.215 0.516 2.970 28.727 B B 4 5 9.845 C C 59 58 3.074 4.861 0.421 -0.419 BB_DG4DT5:DA58DC59_CC 3 0.627 -1.269 28.314 -1.862 -0.717 3.486 33.498 B B 5 6 6.657 C C 58 57 3.366 3.803 -1.136 -0.178 BB_DT5DG6:DC57DA58_CC 4 -6.938 12.146 32.576 -0.975 0.757 3.277 35.371 B B 6 7 8.673 C C 57 56 3.393 5.248 -0.820 -0.874 BB_DG6DG7:DC56DC57_CC 5 -2.339 3.866 34.916 -2.233 0.996 3.510 37.036 B B 7 8 5.611 C C 56 55 3.558 3.558 -0.212 -0.406 BB_DG7DG8:DC55DC56_CC 6 -1.203 1.896 36.851 -1.156 0.159 2.927 31.763 B B 8 9 7.976 C C 55 54 2.958 4.347 1.061 -0.613 BB_DG8DC9:DG54DC55_CC 7 2.685 -4.926 31.360 -1.842 -1.492 3.546 32.363 B B 9 10 7.952 C C 54 53 3.398 4.405 -1.129 0.408 BB_DC9DA10:DT53DG54_CC 8 -4.654 8.402 31.739 -0.103 1.145 3.252 32.313 B B 10 11 1.985 C C 53 52 3.229 1.104 0.633 -0.496 BB_DA10DC11:DG52DT53_CC 9 2.703 -4.863 32.185 -1.085 -0.663 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1998-06-10 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1997-12-10 REL ZN ZINC ION HOH water ZN 201 4 ZN ZN 201 A ZN 202 4 ZN ZN 202 A ZN 203 4 ZN ZN 203 A HOH 301 5 HOH HOH 301 B HOH 302 5 HOH HOH 302 B HOH 303 5 HOH HOH 303 B HOH 305 5 HOH HOH 305 B HOH 306 5 HOH HOH 306 B HOH 307 5 HOH HOH 307 B HOH 308 5 HOH HOH 308 B HOH 309 5 HOH HOH 309 B HOH 312 5 HOH HOH 312 B HOH 313 5 HOH HOH 313 B HOH 315 5 HOH HOH 315 B HOH 316 5 HOH HOH 316 B HOH 317 5 HOH HOH 317 B HOH 319 5 HOH HOH 319 B HOH 320 5 HOH HOH 320 B HOH 321 5 HOH HOH 321 B HOH 366 5 HOH HOH 366 B HOH 367 5 HOH HOH 367 B HOH 370 5 HOH HOH 370 B HOH 371 5 HOH HOH 371 B HOH 372 5 HOH HOH 372 B HOH 389 5 HOH HOH 389 B HOH 398 5 HOH HOH 398 B HOH 399 5 HOH HOH 399 B HOH 406 5 HOH HOH 406 B HOH 408 5 HOH HOH 408 B HOH 410 5 HOH HOH 410 B HOH 411 5 HOH HOH 411 B HOH 412 5 HOH HOH 412 B HOH 413 5 HOH HOH 413 B HOH 414 5 HOH HOH 414 B HOH 416 5 HOH HOH 416 B HOH 417 5 HOH HOH 417 B HOH 419 5 HOH HOH 419 B HOH 422 5 HOH HOH 422 B HOH 423 5 HOH HOH 423 B HOH 424 5 HOH HOH 424 B HOH 425 5 HOH HOH 425 B HOH 433 5 HOH HOH 433 B HOH 434 5 HOH HOH 434 B HOH 304 5 HOH HOH 304 C HOH 310 5 HOH HOH 310 C HOH 311 5 HOH HOH 311 C HOH 314 5 HOH HOH 314 C HOH 318 5 HOH HOH 318 C HOH 352 5 HOH HOH 352 C HOH 353 5 HOH HOH 353 C HOH 354 5 HOH HOH 354 C HOH 357 5 HOH HOH 357 C HOH 358 5 HOH HOH 358 C HOH 359 5 HOH HOH 359 C HOH 360 5 HOH HOH 360 C HOH 362 5 HOH HOH 362 C HOH 363 5 HOH HOH 363 C HOH 384 5 HOH HOH 384 C HOH 387 5 HOH HOH 387 C HOH 388 5 HOH HOH 388 C HOH 395 5 HOH HOH 395 C HOH 396 5 HOH HOH 396 C HOH 401 5 HOH HOH 401 C HOH 402 5 HOH HOH 402 C HOH 403 5 HOH HOH 403 C HOH 404 5 HOH HOH 404 C HOH 405 5 HOH HOH 405 C HOH 420 5 HOH HOH 420 C HOH 426 5 HOH HOH 426 C HOH 322 5 HOH HOH 322 A HOH 323 5 HOH HOH 323 A HOH 324 5 HOH HOH 324 A HOH 325 5 HOH HOH 325 A HOH 326 5 HOH HOH 326 A HOH 327 5 HOH HOH 327 A HOH 328 5 HOH HOH 328 A HOH 329 5 HOH HOH 329 A HOH 330 5 HOH HOH 330 A HOH 331 5 HOH HOH 331 A HOH 332 5 HOH HOH 332 A HOH 333 5 HOH HOH 333 A HOH 334 5 HOH HOH 334 A HOH 335 5 HOH HOH 335 A HOH 336 5 HOH HOH 336 A HOH 337 5 HOH HOH 337 A HOH 338 5 HOH HOH 338 A HOH 339 5 HOH HOH 339 A HOH 340 5 HOH HOH 340 A HOH 341 5 HOH HOH 341 A HOH 342 5 HOH HOH 342 A HOH 343 5 HOH HOH 343 A HOH 344 5 HOH HOH 344 A HOH 345 5 HOH HOH 345 A HOH 346 5 HOH HOH 346 A HOH 347 5 HOH HOH 347 A HOH 348 5 HOH HOH 348 A HOH 349 5 HOH HOH 349 A HOH 350 5 HOH HOH 350 A HOH 351 5 HOH HOH 351 A HOH 355 5 HOH HOH 355 A HOH 356 5 HOH HOH 356 A HOH 361 5 HOH HOH 361 A HOH 364 5 HOH HOH 364 A HOH 365 5 HOH HOH 365 A HOH 368 5 HOH HOH 368 A HOH 369 5 HOH HOH 369 A HOH 373 5 HOH HOH 373 A HOH 374 5 HOH HOH 374 A HOH 375 5 HOH HOH 375 A HOH 376 5 HOH HOH 376 A HOH 377 5 HOH HOH 377 A HOH 378 5 HOH HOH 378 A HOH 379 5 HOH HOH 379 A HOH 380 5 HOH HOH 380 A HOH 381 5 HOH HOH 381 A HOH 382 5 HOH HOH 382 A HOH 383 5 HOH HOH 383 A HOH 385 5 HOH HOH 385 A HOH 386 5 HOH HOH 386 A HOH 390 5 HOH HOH 390 A HOH 391 5 HOH HOH 391 A HOH 392 5 HOH HOH 392 A HOH 393 5 HOH HOH 393 A HOH 394 5 HOH HOH 394 A HOH 397 5 HOH HOH 397 A HOH 400 5 HOH HOH 400 A HOH 407 5 HOH HOH 407 A HOH 409 5 HOH HOH 409 A HOH 415 5 HOH HOH 415 A HOH 418 5 HOH HOH 418 A HOH 421 5 HOH HOH 421 A HOH 427 5 HOH HOH 427 A HOH 428 5 HOH HOH 428 A HOH 429 5 HOH HOH 429 A HOH 430 5 HOH HOH 430 A HOH 431 5 HOH HOH 431 A HOH 432 5 HOH HOH 432 A HOH 435 5 HOH HOH 435 A HOH 436 5 HOH HOH 436 A HOH 437 5 HOH HOH 437 A HOH 438 5 HOH HOH 438 A HOH 439 5 HOH HOH 439 A HOH 440 5 HOH HOH 440 A HOH 441 5 HOH HOH 441 A HOH 442 5 HOH HOH 442 A HOH 443 5 HOH HOH 443 A HOH 444 5 HOH HOH 444 A HOH 445 5 HOH HOH 445 A HOH 446 5 HOH HOH 446 A HOH 447 5 HOH HOH 447 A HOH 448 5 HOH HOH 448 A HOH 449 5 HOH HOH 449 A A 1 n 1 DA 1 B G 2 n 2 DG 2 B C 3 n 3 DC 3 B G 4 n 4 DG 4 B T 5 n 5 DT 5 B G 6 n 6 DG 6 B G 7 n 7 DG 7 B G 8 n 8 DG 8 B C 9 n 9 DC 9 B A 10 n 10 DA 10 B C 11 n 11 DC 11 B T 51 n 1 DT 51 C G 52 n 2 DG 52 C T 53 n 3 DT 53 C G 54 n 4 DG 54 C C 55 n 5 DC 55 C C 56 n 6 DC 56 C C 57 n 7 DC 57 C A 58 n 8 DA 58 C C 59 n 9 DC 59 C G 60 n 10 DG 60 C C 61 n 11 DC 61 C n 1 101 A n 2 102 A ARG 103 n 3 ARG 103 A PRO 104 n 4 PRO 104 A TYR 105 n 5 TYR 105 A ALA 106 n 6 ALA 106 A CYS 107 n 7 CYS 107 A PRO 108 n 8 PRO 108 A VAL 109 n 9 VAL 109 A GLU 110 n 10 GLU 110 A SER 111 n 11 SER 111 A CYS 112 n 12 CYS 112 A ASP 113 n 13 ASP 113 A ARG 114 n 14 ARG 114 A ARG 115 n 15 ARG 115 A PHE 116 n 16 PHE 116 A SER 117 n 17 SER 117 A GLN 118 n 18 GLN 118 A SER 119 n 19 SER 119 A GLY 120 n 20 GLY 120 A SER 121 n 21 SER 121 A LEU 122 n 22 LEU 122 A THR 123 n 23 THR 123 A ARG 124 n 24 ARG 124 A HIS 125 n 25 HIS 125 A ILE 126 n 26 ILE 126 A ARG 127 n 27 ARG 127 A ILE 128 n 28 ILE 128 A HIS 129 n 29 HIS 129 A THR 130 n 30 THR 130 A GLY 131 n 31 GLY 131 A GLN 132 n 32 GLN 132 A LYS 133 n 33 LYS 133 A PRO 134 n 34 PRO 134 A PHE 135 n 35 PHE 135 A GLN 136 n 36 GLN 136 A CYS 137 n 37 CYS 137 A ARG 138 n 38 ARG 138 A ILE 139 n 39 ILE 139 A CYS 140 n 40 CYS 140 A MET 141 n 41 MET 141 A ARG 142 n 42 ARG 142 A ASN 143 n 43 ASN 143 A PHE 144 n 44 PHE 144 A SER 145 n 45 SER 145 A ARG 146 n 46 ARG 146 A SER 147 n 47 SER 147 A ASP 148 n 48 ASP 148 A HIS 149 n 49 HIS 149 A LEU 150 n 50 LEU 150 A THR 151 n 51 THR 151 A THR 152 n 52 THR 152 A HIS 153 n 53 HIS 153 A ILE 154 n 54 ILE 154 A ARG 155 n 55 ARG 155 A THR 156 n 56 THR 156 A HIS 157 n 57 HIS 157 A THR 158 n 58 THR 158 A GLY 159 n 59 GLY 159 A GLU 160 n 60 GLU 160 A LYS 161 n 61 LYS 161 A PRO 162 n 62 PRO 162 A PHE 163 n 63 PHE 163 A ALA 164 n 64 ALA 164 A CYS 165 n 65 CYS 165 A ASP 166 n 66 ASP 166 A ILE 167 n 67 ILE 167 A CYS 168 n 68 CYS 168 A GLY 169 n 69 GLY 169 A ARG 170 n 70 ARG 170 A LYS 171 n 71 LYS 171 A PHE 172 n 72 PHE 172 A ALA 173 n 73 ALA 173 A ARG 174 n 74 ARG 174 A SER 175 n 75 SER 175 A ASP 176 n 76 ASP 176 A GLU 177 n 77 GLU 177 A ARG 178 n 78 ARG 178 A LYS 179 n 79 LYS 179 A ARG 180 n 80 ARG 180 A HIS 181 n 81 HIS 181 A THR 182 n 82 THR 182 A LYS 183 n 83 LYS 183 A ILE 184 n 84 ILE 184 A HIS 185 n 85 HIS 185 A LEU 186 n 86 LEU 186 A ARG 187 n 87 ARG 187 A n 88 188 A n 89 189 A n 90 190 A author_defined_assembly 3 trimeric A CYS 107 C SG CYS 7 1_555 A ZN 201 D ZN ZN 1_555 A CYS 112 C SG CYS 12 1_555 147.0 A CYS 107 C SG CYS 7 1_555 A ZN 201 D ZN ZN 1_555 A HIS 125 C NE2 HIS 25 1_555 98.7 A CYS 112 C SG CYS 12 1_555 A ZN 201 D ZN ZN 1_555 A HIS 125 C NE2 HIS 25 1_555 110.6 A CYS 107 C SG CYS 7 1_555 A ZN 201 D ZN ZN 1_555 A HIS 129 C NE2 HIS 29 1_555 105.5 A CYS 112 C SG CYS 12 1_555 A ZN 201 D ZN ZN 1_555 A HIS 129 C NE2 HIS 29 1_555 84.0 A HIS 125 C NE2 HIS 25 1_555 A ZN 201 D ZN ZN 1_555 A HIS 129 C NE2 HIS 29 1_555 100.8 A CYS 137 C SG CYS 37 1_555 A ZN 202 E ZN ZN 1_555 A CYS 140 C SG CYS 40 1_555 119.4 A CYS 137 C SG CYS 37 1_555 A ZN 202 E ZN ZN 1_555 A HIS 153 C NE2 HIS 53 1_555 110.9 A CYS 140 C SG CYS 40 1_555 A ZN 202 E ZN ZN 1_555 A HIS 153 C NE2 HIS 53 1_555 107.8 A CYS 137 C SG CYS 37 1_555 A ZN 202 E ZN ZN 1_555 A HIS 157 C NE2 HIS 57 1_555 109.8 A CYS 140 C SG CYS 40 1_555 A ZN 202 E ZN ZN 1_555 A HIS 157 C NE2 HIS 57 1_555 107.0 A HIS 153 C NE2 HIS 53 1_555 A ZN 202 E ZN ZN 1_555 A HIS 157 C NE2 HIS 57 1_555 100.0 A CYS 165 C SG CYS 65 1_555 A ZN 203 F ZN ZN 1_555 A CYS 168 C SG CYS 68 1_555 115.4 A CYS 165 C SG CYS 65 1_555 A ZN 203 F ZN ZN 1_555 A HIS 181 C NE2 HIS 81 1_555 106.3 A CYS 168 C SG CYS 68 1_555 A ZN 203 F ZN ZN 1_555 A HIS 181 C NE2 HIS 81 1_555 104.9 A CYS 165 C SG CYS 65 1_555 A ZN 203 F ZN ZN 1_555 A HIS 185 C NE2 HIS 85 1_555 113.0 A CYS 168 C SG CYS 68 1_555 A ZN 203 F ZN ZN 1_555 A HIS 185 C NE2 HIS 85 1_555 109.7 A HIS 181 C NE2 HIS 81 1_555 A ZN 203 F ZN ZN 1_555 A HIS 185 C NE2 HIS 85 1_555 106.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 105 C O TYR 5 A N PHE 116 C N PHE 16 A O PHE 135 C O PHE 35 A N PHE 144 C N PHE 44 A N PHE 163 C N PHE 63 A O PHE 172 C O PHE 72 1 A MET 101 C MET 1 1 Y 1 A GLU 102 C GLU 2 1 Y 1 A GLN 188 C GLN 88 1 Y 1 A LYS 189 C LYS 89 1 Y 1 A ASP 190 C ASP 90 1 Y 1 A GLU 110 -45.38 -71.13 PARHCSDX.PRO TOPHCSDX.PRO PARNDBX.DNA TOPNDBX.DNA 32.10 1.2200 0.0000 0.0000 4.9500 0.0000 3.1500 0.2770000 0.006 0.2350000 0.2350000 1.600 20.000 2368 20810 11.400 95.700 BASED 100000.000 0.0100 1 RESTRAINED INDIVIDUAL THROUGHOUT 0.000 MULTIPLE ISOMORPHOUS REPLACEMENT 1.600 20.000 149 1311 3 445 714 0.004 0.09 19.3 1.29 0.802 1.500 1.420 2.000 1.380 2.000 2.420 2.500 0.3350000 0.02 0.3320000 1.67 292 2077 8 12.30 87.00 1.600 20.000 1A1H 20835 -2.000 0.0350000 1 45.2000 3.900 95.700 1.600 1.660 4.000 0.1470000 1.700 87.80 model building X-PLOR refinement X-PLOR 3.8 data reduction DENZO data scaling SCALEPACK phasing X-PLOR QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N A SER 119 C SER 19 HELX_P A THR 130 C THR 30 1 1 12 A SER 147 C SER 47 HELX_P A THR 158 C THR 58 1 2 12 A SER 175 C SER 75 HELX_P A HIS 185 C HIS 85 1 3 11 metalc 2.119 A CYS 107 C SG CYS 7 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.688 A CYS 112 C SG CYS 12 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.339 A HIS 125 C NE2 HIS 25 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.222 A HIS 129 C NE2 HIS 29 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.239 A CYS 137 C SG CYS 37 1_555 A ZN 202 E ZN ZN 1_555 metalc 2.283 A CYS 140 C SG CYS 40 1_555 A ZN 202 E ZN ZN 1_555 metalc 2.047 A HIS 153 C NE2 HIS 53 1_555 A ZN 202 E ZN ZN 1_555 metalc 2.075 A HIS 157 C NE2 HIS 57 1_555 A ZN 202 E ZN ZN 1_555 metalc 2.276 A CYS 165 C SG CYS 65 1_555 A ZN 203 F ZN ZN 1_555 metalc 2.322 A CYS 168 C SG CYS 68 1_555 A ZN 203 F ZN ZN 1_555 metalc 2.080 A HIS 181 C NE2 HIS 81 1_555 A ZN 203 F ZN ZN 1_555 metalc 1.997 A HIS 185 C NE2 HIS 85 1_555 A ZN 203 F ZN ZN 1_555 hydrog WATSON-CRICK B DG 2 A N1 DG 2 1_555 C DC 61 B N3 DC 11 1_555 hydrog WATSON-CRICK B DG 2 A N2 DG 2 1_555 C DC 61 B O2 DC 11 1_555 hydrog WATSON-CRICK B DG 2 A O6 DG 2 1_555 C DC 61 B N4 DC 11 1_555 hydrog WATSON-CRICK B DC 3 A N3 DC 3 1_555 C DG 60 B N1 DG 10 1_555 hydrog WATSON-CRICK B DC 3 A N4 DC 3 1_555 C DG 60 B O6 DG 10 1_555 hydrog WATSON-CRICK B DC 3 A O2 DC 3 1_555 C DG 60 B N2 DG 10 1_555 hydrog WATSON-CRICK B DG 4 A N1 DG 4 1_555 C DC 59 B N3 DC 9 1_555 hydrog WATSON-CRICK B DG 4 A N2 DG 4 1_555 C DC 59 B O2 DC 9 1_555 hydrog WATSON-CRICK B DG 4 A O6 DG 4 1_555 C DC 59 B N4 DC 9 1_555 hydrog WATSON-CRICK B DT 5 A N3 DT 5 1_555 C DA 58 B N1 DA 8 1_555 hydrog WATSON-CRICK B DT 5 A O4 DT 5 1_555 C DA 58 B N6 DA 8 1_555 hydrog WATSON-CRICK B DG 6 A N1 DG 6 1_555 C DC 57 B N3 DC 7 1_555 hydrog WATSON-CRICK B DG 6 A N2 DG 6 1_555 C DC 57 B O2 DC 7 1_555 hydrog WATSON-CRICK B DG 6 A O6 DG 6 1_555 C DC 57 B N4 DC 7 1_555 hydrog WATSON-CRICK B DG 7 A N1 DG 7 1_555 C DC 56 B N3 DC 6 1_555 hydrog WATSON-CRICK B DG 7 A N2 DG 7 1_555 C DC 56 B O2 DC 6 1_555 hydrog WATSON-CRICK B DG 7 A O6 DG 7 1_555 C DC 56 B N4 DC 6 1_555 hydrog WATSON-CRICK B DG 8 A N1 DG 8 1_555 C DC 55 B N3 DC 5 1_555 hydrog WATSON-CRICK B DG 8 A N2 DG 8 1_555 C DC 55 B O2 DC 5 1_555 hydrog WATSON-CRICK B DG 8 A O6 DG 8 1_555 C DC 55 B N4 DC 5 1_555 hydrog WATSON-CRICK B DC 9 A N3 DC 9 1_555 C DG 54 B N1 DG 4 1_555 hydrog WATSON-CRICK B DC 9 A N4 DC 9 1_555 C DG 54 B O6 DG 4 1_555 hydrog WATSON-CRICK B DC 9 A O2 DC 9 1_555 C DG 54 B N2 DG 4 1_555 hydrog WATSON-CRICK B DA 10 A N1 DA 10 1_555 C DT 53 B N3 DT 3 1_555 hydrog WATSON-CRICK B DA 10 A N6 DA 10 1_555 C DT 53 B O4 DT 3 1_555 hydrog WATSON-CRICK B DC 11 A N3 DC 11 1_555 C DG 52 B N1 DG 2 1_555 hydrog WATSON-CRICK B DC 11 A N4 DC 11 1_555 C DG 52 B O6 DG 2 1_555 hydrog WATSON-CRICK B DC 11 A O2 DC 11 1_555 C DG 52 B N2 DG 2 1_555 TRANSCRIPTION/DNA COMPLEX (ZINC FINGER-DNA), ZINC FINGER, DNA-BINDING PROTEIN, TRANSCRIPTION-DNA COMPLEX EGR1_MOUSE UNP 3 P08046 1A1H PDB 1 1A1H 1A1H PDB 2 1A1H 308 396 1A1H 102 190 P08046 A 1 2 90 1 11 1A1H 1 11 1A1H B 2 1 11 51 61 1A1H 51 61 1A1H C 3 1 11 1 ARG variant GLN 118 1A1H A P08046 UNP 324 18 1 ASP variant GLY 120 1A1H A P08046 UNP 326 20 1 GLU variant SER 121 1A1H A P08046 UNP 327 21 2 2 2 anti-parallel anti-parallel anti-parallel A TYR 105 C TYR 5 A ALA 106 C ALA 6 A ARG 115 C ARG 15 A PHE 116 C PHE 16 A PHE 135 C PHE 35 A GLN 136 C GLN 36 A ASN 143 C ASN 43 A PHE 144 C PHE 44 A PHE 163 C PHE 63 A ALA 164 C ALA 64 A LYS 171 C LYS 71 A PHE 172 C PHE 72 BINDING SITE FOR RESIDUE ZN A 201 A ZN 201 Software 4 BINDING SITE FOR RESIDUE ZN A 202 A ZN 202 Software 4 BINDING SITE FOR RESIDUE ZN A 203 A ZN 203 Software 4 A CYS 107 C CYS 7 4 1_555 A CYS 112 C CYS 12 4 1_555 A HIS 125 C HIS 25 4 1_555 A HIS 129 C HIS 29 4 1_555 A CYS 137 C CYS 37 4 1_555 A CYS 140 C CYS 40 4 1_555 A HIS 153 C HIS 53 4 1_555 A HIS 157 C HIS 57 4 1_555 A CYS 165 C CYS 65 4 1_555 A CYS 168 C CYS 68 4 1_555 A HIS 181 C HIS 81 4 1_555 A HIS 185 C HIS 85 4 1_555 20 C 2 2 21