0.023641 0.000000 0.000000 0.000000 0.017889 0.000000 0.000000 0.000000 0.007485 0.00000 0.00000 0.00000 Elrod-Erickson, M. Benson, T.E. Pabo, C.O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.300 55.900 133.600 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer UK Structure STRUE6 2005 0969-2126 6 451 464 10.1016/S0969-2126(98)00047-1 9562555 High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. 1998 UK Structure STRUE6 2005 0969-2126 4 1171 1180 Zif268 Protein-DNA Complex Refined at 1.6 A: A Model System for Understanding Zinc Finger-DNA Interactions 1996 US Science SCIEAS 0038 0036-8075 263 671 673 Zinc Finger Phage: Affinity Selection of Fingers with New DNA-Binding Specificities 1994 US Science SCIEAS 0038 0036-8075 252 809 817 Zinc Finger-DNA Recognition: Crystal Structure of a Zif268-DNA Complex at 2.1 A 1991 10.2210/pdb1a1j/pdb pdb_00001a1j 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 130.00 1 YALE MIRRORS IMAGE PLATE 1995-12-15 RIGAKU RAXIS IIC YALE MIRRORS M x-ray 1 1.0 ROTATING ANODE RIGAKU RU200 3430.233 DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3') 1 syn polymer 3279.151 DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') 1 syn polymer 10795.463 PROTEIN (RADR ZIF268 ZINC FINGER PEPTIDE) ZINC FINGER 1 man polymer 65.409 ZINC ION 3 syn non-polymer 18.015 water 153 nat water RADR ZIF268 ZINC FINGER PEPTIDE ZINC WATER no no (DA)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(DC)(DG)(DT) AGCGTGGGCGT B polydeoxyribonucleotide no no (DT)(DA)(DC)(DG)(DC)(DC)(DC)(DA)(DC)(DG)(DC) TACGCCCACGC C polydeoxyribonucleotide no no MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR HTKIHLRQKD MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR HTKIHLRQKD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia Escherichia coli sample 10090 Mus musculus 469008 Escherichia coli BL21(DE3) BL21 (DE3) PRADR 1 2.26 45.48 VAPOR DIFFUSION, HANGING DROP 6.2 35% PEG 3350, 200MM NACL, 25 MM MES PH 6.2, VAPOR DIFFUSION, HANGING DROP NACL 1 MES 1 PEG 3350 1 NACL 2 MES 2 PEG 3350 2 -12.766 1 19 B 2 C 61 5.765 B_DG2:DC61_C 1 -8.818 -0.282 -0.357 0.126 8.978 1 19 B 3 C 60 3.481 B_DC3:DG60_C 2 -0.624 0.715 -0.368 -0.159 -7.161 1 19 B 4 C 59 1.014 B_DG4:DC59_C 3 -9.767 -0.209 -0.213 -0.007 4.394 1 20 B 5 C 58 1.827 B_DT5:DA58_C 4 -2.273 0.097 -0.301 -0.028 0.808 1 19 B 6 C 57 1.326 B_DG6:DC57_C 5 -5.772 -0.155 0.170 0.237 1.858 1 19 B 7 C 56 -1.381 B_DG7:DC56_C 6 -11.630 -0.100 -0.069 -0.045 -9.042 1 19 B 8 C 55 2.584 B_DG8:DC55_C 7 -7.612 -0.386 -0.574 -0.134 12.617 1 19 B 9 C 54 4.844 B_DC9:DG54_C 8 -7.553 0.187 -0.578 0.087 -2.630 1 19 B 10 C 53 4.433 B_DG10:DC53_C 9 -12.524 -0.353 0.105 0.097 2.451 1 20 B 11 C 52 3.490 B_DT11:DA52_C 10 -10.095 -0.097 -0.278 0.309 2.486 26.861 B B 2 3 16.690 C C 61 60 2.700 7.649 0.910 -0.317 BB_DG2DC3:DG60DC61_CC 1 -0.507 1.106 25.763 -2.278 -2.065 3.409 33.339 B B 3 4 16.683 C C 60 59 3.563 9.416 -1.180 -0.523 BB_DC3DG4:DC59DG60_CC 2 -4.714 8.353 31.677 -2.625 1.198 3.132 29.230 B B 4 5 4.392 C C 59 58 3.153 2.213 0.478 -0.416 BB_DG4DT5:DA58DC59_CC 3 1.412 -2.802 29.114 -1.287 -0.653 3.538 34.125 B B 5 6 5.274 C C 58 57 3.465 3.070 -0.923 -0.328 BB_DT5DG6:DC57DA58_CC 4 -7.082 12.168 33.266 -1.087 0.354 3.155 33.771 B B 6 7 8.583 C C 57 56 3.258 4.969 -0.796 -0.581 BB_DG6DG7:DC56DC57_CC 5 -0.590 1.019 33.409 -1.792 1.275 3.420 36.188 B B 7 8 11.493 C C 56 55 3.522 7.081 0.172 -0.188 BB_DG7DG8:DC55DC56_CC 6 4.109 -6.670 35.280 -1.374 0.345 2.549 27.649 B B 8 9 15.303 C C 55 54 2.701 7.231 0.870 -0.327 BB_DG8DC9:DG54DC55_CC 7 0.766 -1.620 26.694 -2.118 -1.668 3.709 37.893 B B 9 10 10.878 C C 54 53 3.698 6.965 -0.720 0.025 BB_DC9DG10:DC53DG54_CC 8 -8.835 13.798 36.243 -0.997 -0.204 3.079 31.699 B B 10 11 2.472 C C 53 52 3.133 1.350 -0.742 -0.639 BB_DG10DT11:DA52DC53_CC 9 1.014 -1.857 31.656 -1.406 1.536 database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Refinement description 1 0 1998-06-17 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NDB Y BNL 1997-12-10 REL ZN ZINC ION HOH water 1AAY PDB ENTRY 1AAY, WITHOUT WATERS AND WITHOUT SIDE CHAINS FOR RESIDUES 18 - 24 PDB experimental model ZN 201 4 ZN ZN 201 A ZN 202 4 ZN ZN 202 A ZN 203 4 ZN ZN 203 A HOH 328 5 HOH HOH 328 B HOH 332 5 HOH HOH 332 B HOH 336 5 HOH HOH 336 B HOH 344 5 HOH HOH 344 B HOH 345 5 HOH HOH 345 B HOH 346 5 HOH HOH 346 B HOH 347 5 HOH HOH 347 B HOH 348 5 HOH HOH 348 B HOH 349 5 HOH HOH 349 B HOH 351 5 HOH HOH 351 B HOH 356 5 HOH HOH 356 B HOH 360 5 HOH HOH 360 B HOH 361 5 HOH HOH 361 B HOH 363 5 HOH HOH 363 B HOH 367 5 HOH HOH 367 B HOH 370 5 HOH HOH 370 B HOH 385 5 HOH HOH 385 B HOH 389 5 HOH HOH 389 B HOH 404 5 HOH HOH 404 B HOH 405 5 HOH HOH 405 B HOH 408 5 HOH HOH 408 B HOH 411 5 HOH HOH 411 B HOH 420 5 HOH HOH 420 B HOH 421 5 HOH HOH 421 B HOH 422 5 HOH HOH 422 B HOH 423 5 HOH HOH 423 B HOH 424 5 HOH HOH 424 B HOH 425 5 HOH HOH 425 B HOH 426 5 HOH HOH 426 B HOH 427 5 HOH HOH 427 B HOH 428 5 HOH HOH 428 B HOH 446 5 HOH HOH 446 B HOH 329 5 HOH HOH 329 C HOH 330 5 HOH HOH 330 C HOH 331 5 HOH HOH 331 C HOH 333 5 HOH HOH 333 C HOH 334 5 HOH HOH 334 C HOH 335 5 HOH HOH 335 C HOH 369 5 HOH HOH 369 C HOH 372 5 HOH HOH 372 C HOH 373 5 HOH HOH 373 C HOH 377 5 HOH HOH 377 C HOH 379 5 HOH HOH 379 C HOH 386 5 HOH HOH 386 C HOH 387 5 HOH HOH 387 C HOH 388 5 HOH HOH 388 C HOH 390 5 HOH HOH 390 C HOH 391 5 HOH HOH 391 C HOH 406 5 HOH HOH 406 C HOH 407 5 HOH HOH 407 C HOH 417 5 HOH HOH 417 C HOH 419 5 HOH HOH 419 C HOH 429 5 HOH HOH 429 C HOH 430 5 HOH HOH 430 C HOH 431 5 HOH HOH 431 C HOH 436 5 HOH HOH 436 C HOH 437 5 HOH HOH 437 C HOH 439 5 HOH HOH 439 C HOH 441 5 HOH HOH 441 C HOH 301 5 HOH HOH 301 A HOH 302 5 HOH HOH 302 A HOH 303 5 HOH HOH 303 A HOH 304 5 HOH HOH 304 A HOH 305 5 HOH HOH 305 A HOH 306 5 HOH HOH 306 A HOH 307 5 HOH HOH 307 A HOH 308 5 HOH HOH 308 A HOH 309 5 HOH HOH 309 A HOH 310 5 HOH HOH 310 A HOH 311 5 HOH HOH 311 A HOH 312 5 HOH HOH 312 A HOH 313 5 HOH HOH 313 A HOH 314 5 HOH HOH 314 A HOH 315 5 HOH HOH 315 A HOH 316 5 HOH HOH 316 A HOH 317 5 HOH HOH 317 A HOH 318 5 HOH HOH 318 A HOH 319 5 HOH HOH 319 A HOH 320 5 HOH HOH 320 A HOH 321 5 HOH HOH 321 A HOH 322 5 HOH HOH 322 A HOH 323 5 HOH HOH 323 A HOH 324 5 HOH HOH 324 A HOH 325 5 HOH HOH 325 A HOH 326 5 HOH HOH 326 A HOH 327 5 HOH HOH 327 A HOH 337 5 HOH HOH 337 A HOH 338 5 HOH HOH 338 A HOH 339 5 HOH HOH 339 A HOH 340 5 HOH HOH 340 A HOH 341 5 HOH HOH 341 A HOH 342 5 HOH HOH 342 A HOH 343 5 HOH HOH 343 A HOH 350 5 HOH HOH 350 A HOH 352 5 HOH HOH 352 A HOH 353 5 HOH HOH 353 A HOH 354 5 HOH HOH 354 A HOH 355 5 HOH HOH 355 A HOH 357 5 HOH HOH 357 A HOH 358 5 HOH HOH 358 A HOH 359 5 HOH HOH 359 A HOH 362 5 HOH HOH 362 A HOH 364 5 HOH HOH 364 A HOH 365 5 HOH HOH 365 A HOH 366 5 HOH HOH 366 A HOH 368 5 HOH HOH 368 A HOH 371 5 HOH HOH 371 A HOH 374 5 HOH HOH 374 A HOH 375 5 HOH HOH 375 A HOH 376 5 HOH HOH 376 A HOH 378 5 HOH HOH 378 A HOH 380 5 HOH HOH 380 A HOH 381 5 HOH HOH 381 A HOH 382 5 HOH HOH 382 A HOH 383 5 HOH HOH 383 A HOH 384 5 HOH HOH 384 A HOH 392 5 HOH HOH 392 A HOH 393 5 HOH HOH 393 A HOH 394 5 HOH HOH 394 A HOH 395 5 HOH HOH 395 A HOH 396 5 HOH HOH 396 A HOH 397 5 HOH HOH 397 A HOH 398 5 HOH HOH 398 A HOH 399 5 HOH HOH 399 A HOH 400 5 HOH HOH 400 A HOH 401 5 HOH HOH 401 A HOH 402 5 HOH HOH 402 A HOH 403 5 HOH HOH 403 A HOH 409 5 HOH HOH 409 A HOH 410 5 HOH HOH 410 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A HOH 415 5 HOH HOH 415 A HOH 416 5 HOH HOH 416 A HOH 418 5 HOH HOH 418 A HOH 432 5 HOH HOH 432 A HOH 433 5 HOH HOH 433 A HOH 434 5 HOH HOH 434 A HOH 435 5 HOH HOH 435 A HOH 438 5 HOH HOH 438 A HOH 440 5 HOH HOH 440 A HOH 442 5 HOH HOH 442 A HOH 443 5 HOH HOH 443 A HOH 444 5 HOH HOH 444 A HOH 445 5 HOH HOH 445 A HOH 447 5 HOH HOH 447 A HOH 448 5 HOH HOH 448 A HOH 449 5 HOH HOH 449 A HOH 450 5 HOH HOH 450 A HOH 451 5 HOH HOH 451 A HOH 452 5 HOH HOH 452 A HOH 453 5 HOH HOH 453 A A 1 n 1 DA 1 B G 2 n 2 DG 2 B C 3 n 3 DC 3 B G 4 n 4 DG 4 B T 5 n 5 DT 5 B G 6 n 6 DG 6 B G 7 n 7 DG 7 B G 8 n 8 DG 8 B C 9 n 9 DC 9 B G 10 n 10 DG 10 B T 11 n 11 DT 11 B T 51 n 1 DT 51 C A 52 n 2 DA 52 C C 53 n 3 DC 53 C G 54 n 4 DG 54 C C 55 n 5 DC 55 C C 56 n 6 DC 56 C C 57 n 7 DC 57 C A 58 n 8 DA 58 C C 59 n 9 DC 59 C G 60 n 10 DG 60 C C 61 n 11 DC 61 C n 1 101 A n 2 102 A ARG 103 n 3 ARG 103 A PRO 104 n 4 PRO 104 A TYR 105 n 5 TYR 105 A ALA 106 n 6 ALA 106 A CYS 107 n 7 CYS 107 A PRO 108 n 8 PRO 108 A VAL 109 n 9 VAL 109 A GLU 110 n 10 GLU 110 A SER 111 n 11 SER 111 A CYS 112 n 12 CYS 112 A ASP 113 n 13 ASP 113 A ARG 114 n 14 ARG 114 A ARG 115 n 15 ARG 115 A PHE 116 n 16 PHE 116 A SER 117 n 17 SER 117 A ARG 118 n 18 ARG 118 A SER 119 n 19 SER 119 A ALA 120 n 20 ALA 120 A ASP 121 n 21 ASP 121 A LEU 122 n 22 LEU 122 A THR 123 n 23 THR 123 A ARG 124 n 24 ARG 124 A HIS 125 n 25 HIS 125 A ILE 126 n 26 ILE 126 A ARG 127 n 27 ARG 127 A ILE 128 n 28 ILE 128 A HIS 129 n 29 HIS 129 A THR 130 n 30 THR 130 A GLY 131 n 31 GLY 131 A GLN 132 n 32 GLN 132 A LYS 133 n 33 LYS 133 A PRO 134 n 34 PRO 134 A PHE 135 n 35 PHE 135 A GLN 136 n 36 GLN 136 A CYS 137 n 37 CYS 137 A ARG 138 n 38 ARG 138 A ILE 139 n 39 ILE 139 A CYS 140 n 40 CYS 140 A MET 141 n 41 MET 141 A ARG 142 n 42 ARG 142 A ASN 143 n 43 ASN 143 A PHE 144 n 44 PHE 144 A SER 145 n 45 SER 145 A ARG 146 n 46 ARG 146 A SER 147 n 47 SER 147 A ASP 148 n 48 ASP 148 A HIS 149 n 49 HIS 149 A LEU 150 n 50 LEU 150 A THR 151 n 51 THR 151 A THR 152 n 52 THR 152 A HIS 153 n 53 HIS 153 A ILE 154 n 54 ILE 154 A ARG 155 n 55 ARG 155 A THR 156 n 56 THR 156 A HIS 157 n 57 HIS 157 A THR 158 n 58 THR 158 A GLY 159 n 59 GLY 159 A GLU 160 n 60 GLU 160 A LYS 161 n 61 LYS 161 A PRO 162 n 62 PRO 162 A PHE 163 n 63 PHE 163 A ALA 164 n 64 ALA 164 A CYS 165 n 65 CYS 165 A ASP 166 n 66 ASP 166 A ILE 167 n 67 ILE 167 A CYS 168 n 68 CYS 168 A GLY 169 n 69 GLY 169 A ARG 170 n 70 ARG 170 A LYS 171 n 71 LYS 171 A PHE 172 n 72 PHE 172 A ALA 173 n 73 ALA 173 A ARG 174 n 74 ARG 174 A SER 175 n 75 SER 175 A ASP 176 n 76 ASP 176 A GLU 177 n 77 GLU 177 A ARG 178 n 78 ARG 178 A LYS 179 n 79 LYS 179 A ARG 180 n 80 ARG 180 A HIS 181 n 81 HIS 181 A THR 182 n 82 THR 182 A LYS 183 n 83 LYS 183 A ILE 184 n 84 ILE 184 A HIS 185 n 85 HIS 185 A LEU 186 n 86 LEU 186 A n 87 187 A n 88 188 A n 89 189 A n 90 190 A author_defined_assembly 3 trimeric A CYS 107 C SG CYS 7 1_555 A ZN 201 D ZN ZN 1_555 A CYS 112 C SG CYS 12 1_555 110.5 A CYS 107 C SG CYS 7 1_555 A ZN 201 D ZN ZN 1_555 A HIS 125 C NE2 HIS 25 1_555 105.0 A CYS 112 C SG CYS 12 1_555 A ZN 201 D ZN ZN 1_555 A HIS 125 C NE2 HIS 25 1_555 105.9 A CYS 107 C SG CYS 7 1_555 A ZN 201 D ZN ZN 1_555 A HIS 129 C NE2 HIS 29 1_555 107.8 A CYS 112 C SG CYS 12 1_555 A ZN 201 D ZN ZN 1_555 A HIS 129 C NE2 HIS 29 1_555 119.2 A HIS 125 C NE2 HIS 25 1_555 A ZN 201 D ZN ZN 1_555 A HIS 129 C NE2 HIS 29 1_555 107.5 A CYS 137 C SG CYS 37 1_555 A ZN 202 E ZN ZN 1_555 A CYS 140 C SG CYS 40 1_555 118.7 A CYS 137 C SG CYS 37 1_555 A ZN 202 E ZN ZN 1_555 A HIS 153 C NE2 HIS 53 1_555 119.3 A CYS 140 C SG CYS 40 1_555 A ZN 202 E ZN ZN 1_555 A HIS 153 C NE2 HIS 53 1_555 98.9 A CYS 137 C SG CYS 37 1_555 A ZN 202 E ZN ZN 1_555 A HIS 157 C NE2 HIS 57 1_555 113.8 A CYS 140 C SG CYS 40 1_555 A ZN 202 E ZN ZN 1_555 A HIS 157 C NE2 HIS 57 1_555 114.3 A HIS 153 C NE2 HIS 53 1_555 A ZN 202 E ZN ZN 1_555 A HIS 157 C NE2 HIS 57 1_555 87.0 A CYS 165 C SG CYS 65 1_555 A ZN 203 F ZN ZN 1_555 A CYS 168 C SG CYS 68 1_555 116.7 A CYS 165 C SG CYS 65 1_555 A ZN 203 F ZN ZN 1_555 A HIS 181 C NE2 HIS 81 1_555 105.9 A CYS 168 C SG CYS 68 1_555 A ZN 203 F ZN ZN 1_555 A HIS 181 C NE2 HIS 81 1_555 103.7 A CYS 165 C SG CYS 65 1_555 A ZN 203 F ZN ZN 1_555 A HIS 185 C NE2 HIS 85 1_555 98.4 A CYS 168 C SG CYS 68 1_555 A ZN 203 F ZN ZN 1_555 A HIS 185 C NE2 HIS 85 1_555 124.3 A HIS 181 C NE2 HIS 81 1_555 A ZN 203 F ZN ZN 1_555 A HIS 185 C NE2 HIS 85 1_555 106.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 105 C O TYR 5 A N PHE 116 C N PHE 16 A O PHE 135 C O PHE 35 A N PHE 144 C N PHE 44 A N PHE 163 C N PHE 63 A O PHE 172 C O PHE 72 1 A MET 101 C MET 1 1 Y 1 A GLU 102 C GLU 2 1 Y 1 A ARG 187 C ARG 87 1 Y 1 A GLN 188 C GLN 88 1 Y 1 A LYS 189 C LYS 89 1 Y 1 A ASP 190 C ASP 90 1 Y PARHCSDX.PRO TOPHCSDX.PRO PARNDBX.DNA TOPNDBX.DNA 32.20 10.320 0.0000 0.0000 20.080 0.0000 18.030 0.2620000 0.008 0.2100000 0.2100000 2.000 20.000 1094 9959 10.900 89.600 RANDOM 100000.000 0.0000 1 RESTRAINED INDIVIDUAL THROUGHOUT 0.000 ISOMORPHOUS MOLECULAR REPLACEMENT PDB ENTRY 1AAY, WITHOUT WATERS AND WITHOUT SIDE CHAINS FOR RESIDUES 18 - 24 2.000 20.000 153 1313 3 445 712 0.008 1.3 23.2 1.2 0.705 1.500 1.152 2.000 1.199 2.000 1.945 2.500 0.3140000 0.03 0.2990000 2.09 123 1140 8 10.80 83.60 2.000 20.000 1A1J 9959 -2.000 0.0340000 1 39.5000 3.000 89.600 2.000 2.070 19.40 0.0540000 1.800 82.90 model building X-PLOR refinement X-PLOR 3.843 data reduction DENZO data scaling SCALEPACK phasing X-PLOR RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N A SER 119 C SER 19 HELX_P A THR 130 C THR 30 1 1 12 A SER 147 C SER 47 HELX_P A THR 158 C THR 58 1 2 12 A SER 175 C SER 75 HELX_P A HIS 185 C HIS 85 1 3 11 metalc 2.411 A CYS 107 C SG CYS 7 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.431 A CYS 112 C SG CYS 12 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.107 A HIS 125 C NE2 HIS 25 1_555 A ZN 201 D ZN ZN 1_555 metalc 1.954 A HIS 129 C NE2 HIS 29 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.185 A CYS 137 C SG CYS 37 1_555 A ZN 202 E ZN ZN 1_555 metalc 2.260 A CYS 140 C SG CYS 40 1_555 A ZN 202 E ZN ZN 1_555 metalc 2.260 A HIS 153 C NE2 HIS 53 1_555 A ZN 202 E ZN ZN 1_555 metalc 2.224 A HIS 157 C NE2 HIS 57 1_555 A ZN 202 E ZN ZN 1_555 metalc 2.403 A CYS 165 C SG CYS 65 1_555 A ZN 203 F ZN ZN 1_555 metalc 2.325 A CYS 168 C SG CYS 68 1_555 A ZN 203 F ZN ZN 1_555 metalc 2.117 A HIS 181 C NE2 HIS 81 1_555 A ZN 203 F ZN ZN 1_555 metalc 1.906 A HIS 185 C NE2 HIS 85 1_555 A ZN 203 F ZN ZN 1_555 hydrog WATSON-CRICK B DG 2 A N1 DG 2 1_555 C DC 61 B N3 DC 11 1_555 hydrog WATSON-CRICK B DG 2 A N2 DG 2 1_555 C DC 61 B O2 DC 11 1_555 hydrog WATSON-CRICK B DG 2 A O6 DG 2 1_555 C DC 61 B N4 DC 11 1_555 hydrog WATSON-CRICK B DC 3 A N3 DC 3 1_555 C DG 60 B N1 DG 10 1_555 hydrog WATSON-CRICK B DC 3 A N4 DC 3 1_555 C DG 60 B O6 DG 10 1_555 hydrog WATSON-CRICK B DC 3 A O2 DC 3 1_555 C DG 60 B N2 DG 10 1_555 hydrog WATSON-CRICK B DG 4 A N1 DG 4 1_555 C DC 59 B N3 DC 9 1_555 hydrog WATSON-CRICK B DG 4 A N2 DG 4 1_555 C DC 59 B O2 DC 9 1_555 hydrog WATSON-CRICK B DG 4 A O6 DG 4 1_555 C DC 59 B N4 DC 9 1_555 hydrog WATSON-CRICK B DT 5 A N3 DT 5 1_555 C DA 58 B N1 DA 8 1_555 hydrog WATSON-CRICK B DT 5 A O4 DT 5 1_555 C DA 58 B N6 DA 8 1_555 hydrog WATSON-CRICK B DG 6 A N1 DG 6 1_555 C DC 57 B N3 DC 7 1_555 hydrog WATSON-CRICK B DG 6 A N2 DG 6 1_555 C DC 57 B O2 DC 7 1_555 hydrog WATSON-CRICK B DG 6 A O6 DG 6 1_555 C DC 57 B N4 DC 7 1_555 hydrog WATSON-CRICK B DG 7 A N1 DG 7 1_555 C DC 56 B N3 DC 6 1_555 hydrog WATSON-CRICK B DG 7 A N2 DG 7 1_555 C DC 56 B O2 DC 6 1_555 hydrog WATSON-CRICK B DG 7 A O6 DG 7 1_555 C DC 56 B N4 DC 6 1_555 hydrog WATSON-CRICK B DG 8 A N1 DG 8 1_555 C DC 55 B N3 DC 5 1_555 hydrog WATSON-CRICK B DG 8 A N2 DG 8 1_555 C DC 55 B O2 DC 5 1_555 hydrog WATSON-CRICK B DG 8 A O6 DG 8 1_555 C DC 55 B N4 DC 5 1_555 hydrog WATSON-CRICK B DC 9 A N3 DC 9 1_555 C DG 54 B N1 DG 4 1_555 hydrog WATSON-CRICK B DC 9 A N4 DC 9 1_555 C DG 54 B O6 DG 4 1_555 hydrog WATSON-CRICK B DC 9 A O2 DC 9 1_555 C DG 54 B N2 DG 4 1_555 hydrog WATSON-CRICK B DG 10 A N1 DG 10 1_555 C DC 53 B N3 DC 3 1_555 hydrog WATSON-CRICK B DG 10 A N2 DG 10 1_555 C DC 53 B O2 DC 3 1_555 hydrog WATSON-CRICK B DG 10 A O6 DG 10 1_555 C DC 53 B N4 DC 3 1_555 hydrog WATSON-CRICK B DT 11 A N3 DT 11 1_555 C DA 52 B N1 DA 2 1_555 hydrog WATSON-CRICK B DT 11 A O4 DT 11 1_555 C DA 52 B N6 DA 2 1_555 TRANSCRIPTION/DNA ZINC FINGER-DNA COMPLEX, ZINC FINGER, DNA-BINDING PROTEIN, TRANSCRIPTION-DNA COMPLEX EGR1_MOUSE UNP 3 P08046 1A1J PDB 1 1A1J 1A1J PDB 2 1A1J 308 396 1A1J 102 190 P08046 A 1 2 90 1 11 1A1J 1 11 1A1J B 2 1 11 51 61 1A1J 51 61 1A1J C 3 1 11 1 ASP variant ALA 120 1A1J A P08046 UNP 326 20 1 GLU variant ASP 121 1A1J A P08046 UNP 327 21 2 2 2 anti-parallel anti-parallel anti-parallel A TYR 105 C TYR 5 A ALA 106 C ALA 6 A ARG 115 C ARG 15 A PHE 116 C PHE 16 A PHE 135 C PHE 35 A GLN 136 C GLN 36 A ASN 143 C ASN 43 A PHE 144 C PHE 44 A PHE 163 C PHE 63 A ALA 164 C ALA 64 A LYS 171 C LYS 71 A PHE 172 C PHE 72 BINDING SITE FOR RESIDUE ZN A 201 A ZN 201 Software 4 BINDING SITE FOR RESIDUE ZN A 202 A ZN 202 Software 4 BINDING SITE FOR RESIDUE ZN A 203 A ZN 203 Software 4 A CYS 107 C CYS 7 4 1_555 A CYS 112 C CYS 12 4 1_555 A HIS 125 C HIS 25 4 1_555 A HIS 129 C HIS 29 4 1_555 A CYS 137 C CYS 37 4 1_555 A CYS 140 C CYS 40 4 1_555 A HIS 153 C HIS 53 4 1_555 A HIS 157 C HIS 57 4 1_555 A CYS 165 C CYS 65 4 1_555 A CYS 168 C CYS 68 4 1_555 A HIS 181 C HIS 81 4 1_555 A HIS 185 C HIS 85 4 1_555 20 orthorhombic C 2 2 21