0.023419
0.000000
0.000000
0.000000
0.018018
0.000000
0.000000
0.000000
0.007669
0.00000
0.00000
0.00000
Elrod-Erickson, M.
Benson, T.E.
Pabo, C.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
42.700
55.500
130.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
Structure
STRUE6
2005
0969-2126
6
451
464
10.1016/S0969-2126(98)00047-1
9562555
High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition.
1998
UK
Structure
STRUE6
2005
0969-2126
4
1171
Zif268 Protein-DNA Complex Refined at 1.6 A: A Model System for Understanding Zinc Finger-DNA Interactions
1996
US
Science
SCIEAS
0038
0036-8075
263
671
Zinc Finger Phage: Affinity Selection of Fingers with New DNA-Binding Specificities
1994
US
Science
SCIEAS
0038
0036-8075
252
809
Zinc Finger-DNA Recognition: Crystal Structure of a Zif268-DNA Complex at 2.1 A
1991
10.2210/pdb1a1k/pdb
pdb_00001a1k
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
130.00
1
YALE MIRRORS
IMAGE PLATE
1997-06
RIGAKU RAXIS IIC
YALE MIRRORS
M
x-ray
1
1.0
ROTATING ANODE
RIGAKU RU200
3399.223
DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3')
1
syn
polymer
3310.161
DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3')
1
syn
polymer
10795.463
RADR ZIF268 VARIANT
ZINC FINGER
1
man
polymer
65.409
ZINC ION
3
syn
non-polymer
18.015
water
121
nat
water
no
no
(DA)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(DA)(DC)(DC)
AGCGTGGGACC
B
polydeoxyribonucleotide
no
no
(DT)(DG)(DG)(DT)(DC)(DC)(DC)(DA)(DC)(DG)(DC)
TGGTCCCACGC
C
polydeoxyribonucleotide
no
no
MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR
HTKIHLRQKD
MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR
HTKIHLRQKD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PRADR
1
2.21
44.26
6.2
25% PEG 1450, 25 MM MES PH 6.2
WATER
1
NACL
1
MES
1
PEG 3350
1
WATER
2
NACL
2
MES
2
PEG 3350
2
-4.770
1
19
B
2
C
61
2.120
B_DG2:DC61_C
1
-3.669
-0.429
-0.035
-0.206
10.222
1
19
B
3
C
60
1.303
B_DC3:DG60_C
2
-5.364
0.296
-0.267
-0.288
-5.664
1
19
B
4
C
59
0.564
B_DG4:DC59_C
3
-5.418
-0.390
-0.233
-0.227
2.953
1
20
B
5
C
58
4.819
B_DT5:DA58_C
4
-2.346
0.002
-0.107
-0.315
6.332
1
19
B
6
C
57
3.659
B_DG6:DC57_C
5
-4.765
-0.620
0.169
-0.299
7.577
1
19
B
7
C
56
-1.364
B_DG7:DC56_C
6
-7.006
-0.507
0.189
-0.076
3.443
1
19
B
8
C
55
2.162
B_DG8:DC55_C
7
-10.295
-0.306
-0.045
-0.255
3.236
1
20
B
9
C
54
2.893
B_DA9:DT54_C
8
-6.652
-0.016
0.119
-0.324
0.415
1
19
B
10
C
53
0.666
B_DC10:DG53_C
9
-9.422
-0.008
0.491
-0.231
4.353
1
19
B
11
C
52
0.630
B_DC11:DG52_C
10
-2.967
0.170
0.020
-0.078
2.776
25.741
B
B
2
3
15.115
C
C
61
60
2.890
6.652
0.741
-0.276
BB_DG2DC3:DG60DC61_CC
1
2.166
-4.922
24.788
-2.267
-1.128
3.432
37.412
B
B
3
4
15.328
C
C
60
59
3.567
9.708
-0.769
-0.323
BB_DC3DG4:DC59DG60_CC
2
-4.071
6.427
35.951
-1.898
0.614
2.957
26.468
B
B
4
5
13.450
C
C
59
58
3.133
6.105
0.398
-0.444
BB_DG4DT5:DA58DC59_CC
3
0.468
-1.031
25.763
-2.498
-0.753
3.403
33.585
B
B
5
6
6.084
C
C
58
57
3.303
3.492
-0.954
0.036
BB_DT5DG6:DC57DA58_CC
4
-5.847
10.186
32.906
-0.529
0.659
3.210
34.206
B
B
6
7
5.395
C
C
57
56
3.261
3.168
-0.734
-0.738
BB_DG6DG7:DC56DC57_CC
5
-1.537
2.618
34.030
-1.750
1.008
3.318
35.022
B
B
7
8
9.220
C
C
56
55
3.438
5.525
-0.027
-0.511
BB_DG7DG8:DC55DC56_CC
6
-1.164
1.942
34.578
-1.714
-0.137
3.103
36.408
B
B
8
9
3.572
C
C
55
54
3.142
2.230
0.524
-0.551
BB_DG8DA9:DT54DC55_CC
7
-0.046
0.074
36.342
-1.178
-0.845
3.319
31.055
B
B
9
10
6.450
C
C
54
53
3.379
3.432
-0.382
-0.541
BB_DA9DC10:DG53DT54_CC
8
-4.980
9.359
30.475
-1.692
-0.275
3.234
35.606
B
B
10
11
0.272
C
C
53
52
3.228
0.166
0.305
-0.624
BB_DC10DC11:DG52DG53_CC
9
5.523
-9.066
35.189
-1.045
0.300
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1998-06-10
1
1
2008-05-22
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
NDB
1997-12-10
REL
ZN
ZINC ION
HOH
water
1AAY
PDB ENTRY 1AAY, WITHOUT WATERS AND WITHOUT SIDE CHAINS FOR RESIDUES 18 - 24
PDB
experimental model
ZN
201
4
ZN
ZN
201
A
ZN
202
4
ZN
ZN
202
A
ZN
203
4
ZN
ZN
203
A
HOH
316
5
HOH
HOH
316
B
HOH
318
5
HOH
HOH
318
B
HOH
320
5
HOH
HOH
320
B
HOH
321
5
HOH
HOH
321
B
HOH
322
5
HOH
HOH
322
B
HOH
323
5
HOH
HOH
323
B
HOH
324
5
HOH
HOH
324
B
HOH
327
5
HOH
HOH
327
B
HOH
329
5
HOH
HOH
329
B
HOH
335
5
HOH
HOH
335
B
HOH
336
5
HOH
HOH
336
B
HOH
337
5
HOH
HOH
337
B
HOH
338
5
HOH
HOH
338
B
HOH
339
5
HOH
HOH
339
B
HOH
340
5
HOH
HOH
340
B
HOH
341
5
HOH
HOH
341
B
HOH
361
5
HOH
HOH
361
B
HOH
367
5
HOH
HOH
367
B
HOH
369
5
HOH
HOH
369
B
HOH
370
5
HOH
HOH
370
B
HOH
371
5
HOH
HOH
371
B
HOH
376
5
HOH
HOH
376
B
HOH
377
5
HOH
HOH
377
B
HOH
386
5
HOH
HOH
386
B
HOH
412
5
HOH
HOH
412
B
HOH
414
5
HOH
HOH
414
B
HOH
332
5
HOH
HOH
332
C
HOH
333
5
HOH
HOH
333
C
HOH
334
5
HOH
HOH
334
C
HOH
342
5
HOH
HOH
342
C
HOH
343
5
HOH
HOH
343
C
HOH
344
5
HOH
HOH
344
C
HOH
347
5
HOH
HOH
347
C
HOH
348
5
HOH
HOH
348
C
HOH
350
5
HOH
HOH
350
C
HOH
352
5
HOH
HOH
352
C
HOH
353
5
HOH
HOH
353
C
HOH
372
5
HOH
HOH
372
C
HOH
373
5
HOH
HOH
373
C
HOH
374
5
HOH
HOH
374
C
HOH
375
5
HOH
HOH
375
C
HOH
380
5
HOH
HOH
380
C
HOH
381
5
HOH
HOH
381
C
HOH
382
5
HOH
HOH
382
C
HOH
385
5
HOH
HOH
385
C
HOH
387
5
HOH
HOH
387
C
HOH
388
5
HOH
HOH
388
C
HOH
301
5
HOH
HOH
301
A
HOH
302
5
HOH
HOH
302
A
HOH
303
5
HOH
HOH
303
A
HOH
304
5
HOH
HOH
304
A
HOH
305
5
HOH
HOH
305
A
HOH
306
5
HOH
HOH
306
A
HOH
307
5
HOH
HOH
307
A
HOH
308
5
HOH
HOH
308
A
HOH
309
5
HOH
HOH
309
A
HOH
310
5
HOH
HOH
310
A
HOH
311
5
HOH
HOH
311
A
HOH
312
5
HOH
HOH
312
A
HOH
313
5
HOH
HOH
313
A
HOH
314
5
HOH
HOH
314
A
HOH
315
5
HOH
HOH
315
A
HOH
317
5
HOH
HOH
317
A
HOH
319
5
HOH
HOH
319
A
HOH
325
5
HOH
HOH
325
A
HOH
326
5
HOH
HOH
326
A
HOH
328
5
HOH
HOH
328
A
HOH
330
5
HOH
HOH
330
A
HOH
331
5
HOH
HOH
331
A
HOH
345
5
HOH
HOH
345
A
HOH
346
5
HOH
HOH
346
A
HOH
349
5
HOH
HOH
349
A
HOH
351
5
HOH
HOH
351
A
HOH
354
5
HOH
HOH
354
A
HOH
355
5
HOH
HOH
355
A
HOH
356
5
HOH
HOH
356
A
HOH
357
5
HOH
HOH
357
A
HOH
358
5
HOH
HOH
358
A
HOH
359
5
HOH
HOH
359
A
HOH
360
5
HOH
HOH
360
A
HOH
362
5
HOH
HOH
362
A
HOH
363
5
HOH
HOH
363
A
HOH
364
5
HOH
HOH
364
A
HOH
365
5
HOH
HOH
365
A
HOH
366
5
HOH
HOH
366
A
HOH
368
5
HOH
HOH
368
A
HOH
378
5
HOH
HOH
378
A
HOH
379
5
HOH
HOH
379
A
HOH
383
5
HOH
HOH
383
A
HOH
384
5
HOH
HOH
384
A
HOH
389
5
HOH
HOH
389
A
HOH
390
5
HOH
HOH
390
A
HOH
391
5
HOH
HOH
391
A
HOH
392
5
HOH
HOH
392
A
HOH
393
5
HOH
HOH
393
A
HOH
394
5
HOH
HOH
394
A
HOH
395
5
HOH
HOH
395
A
HOH
396
5
HOH
HOH
396
A
HOH
397
5
HOH
HOH
397
A
HOH
398
5
HOH
HOH
398
A
HOH
399
5
HOH
HOH
399
A
HOH
400
5
HOH
HOH
400
A
HOH
401
5
HOH
HOH
401
A
HOH
402
5
HOH
HOH
402
A
HOH
403
5
HOH
HOH
403
A
HOH
404
5
HOH
HOH
404
A
HOH
405
5
HOH
HOH
405
A
HOH
406
5
HOH
HOH
406
A
HOH
407
5
HOH
HOH
407
A
HOH
408
5
HOH
HOH
408
A
HOH
409
5
HOH
HOH
409
A
HOH
410
5
HOH
HOH
410
A
HOH
411
5
HOH
HOH
411
A
HOH
413
5
HOH
HOH
413
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
A
1
n
1
DA
1
B
G
2
n
2
DG
2
B
C
3
n
3
DC
3
B
G
4
n
4
DG
4
B
T
5
n
5
DT
5
B
G
6
n
6
DG
6
B
G
7
n
7
DG
7
B
G
8
n
8
DG
8
B
A
9
n
9
DA
9
B
C
10
n
10
DC
10
B
C
11
n
11
DC
11
B
T
51
n
1
DT
51
C
G
52
n
2
DG
52
C
G
53
n
3
DG
53
C
T
54
n
4
DT
54
C
C
55
n
5
DC
55
C
C
56
n
6
DC
56
C
C
57
n
7
DC
57
C
A
58
n
8
DA
58
C
C
59
n
9
DC
59
C
G
60
n
10
DG
60
C
C
61
n
11
DC
61
C
n
1
101
A
n
2
102
A
ARG
103
n
3
ARG
103
A
PRO
104
n
4
PRO
104
A
TYR
105
n
5
TYR
105
A
ALA
106
n
6
ALA
106
A
CYS
107
n
7
CYS
107
A
PRO
108
n
8
PRO
108
A
VAL
109
n
9
VAL
109
A
GLU
110
n
10
GLU
110
A
SER
111
n
11
SER
111
A
CYS
112
n
12
CYS
112
A
ASP
113
n
13
ASP
113
A
ARG
114
n
14
ARG
114
A
ARG
115
n
15
ARG
115
A
PHE
116
n
16
PHE
116
A
SER
117
n
17
SER
117
A
ARG
118
n
18
ARG
118
A
SER
119
n
19
SER
119
A
ALA
120
n
20
ALA
120
A
ASP
121
n
21
ASP
121
A
LEU
122
n
22
LEU
122
A
THR
123
n
23
THR
123
A
ARG
124
n
24
ARG
124
A
HIS
125
n
25
HIS
125
A
ILE
126
n
26
ILE
126
A
ARG
127
n
27
ARG
127
A
ILE
128
n
28
ILE
128
A
HIS
129
n
29
HIS
129
A
THR
130
n
30
THR
130
A
GLY
131
n
31
GLY
131
A
GLN
132
n
32
GLN
132
A
LYS
133
n
33
LYS
133
A
PRO
134
n
34
PRO
134
A
PHE
135
n
35
PHE
135
A
GLN
136
n
36
GLN
136
A
CYS
137
n
37
CYS
137
A
ARG
138
n
38
ARG
138
A
ILE
139
n
39
ILE
139
A
CYS
140
n
40
CYS
140
A
MET
141
n
41
MET
141
A
ARG
142
n
42
ARG
142
A
ASN
143
n
43
ASN
143
A
PHE
144
n
44
PHE
144
A
SER
145
n
45
SER
145
A
ARG
146
n
46
ARG
146
A
SER
147
n
47
SER
147
A
ASP
148
n
48
ASP
148
A
HIS
149
n
49
HIS
149
A
LEU
150
n
50
LEU
150
A
THR
151
n
51
THR
151
A
THR
152
n
52
THR
152
A
HIS
153
n
53
HIS
153
A
ILE
154
n
54
ILE
154
A
ARG
155
n
55
ARG
155
A
THR
156
n
56
THR
156
A
HIS
157
n
57
HIS
157
A
THR
158
n
58
THR
158
A
GLY
159
n
59
GLY
159
A
GLU
160
n
60
GLU
160
A
LYS
161
n
61
LYS
161
A
PRO
162
n
62
PRO
162
A
PHE
163
n
63
PHE
163
A
ALA
164
n
64
ALA
164
A
CYS
165
n
65
CYS
165
A
ASP
166
n
66
ASP
166
A
ILE
167
n
67
ILE
167
A
CYS
168
n
68
CYS
168
A
GLY
169
n
69
GLY
169
A
ARG
170
n
70
ARG
170
A
LYS
171
n
71
LYS
171
A
PHE
172
n
72
PHE
172
A
ALA
173
n
73
ALA
173
A
ARG
174
n
74
ARG
174
A
SER
175
n
75
SER
175
A
ASP
176
n
76
ASP
176
A
GLU
177
n
77
GLU
177
A
ARG
178
n
78
ARG
178
A
LYS
179
n
79
LYS
179
A
ARG
180
n
80
ARG
180
A
HIS
181
n
81
HIS
181
A
THR
182
n
82
THR
182
A
LYS
183
n
83
LYS
183
A
ILE
184
n
84
ILE
184
A
HIS
185
n
85
HIS
185
A
LEU
186
n
86
LEU
186
A
ARG
187
n
87
ARG
187
A
n
88
188
A
n
89
189
A
n
90
190
A
author_defined_assembly
3
trimeric
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
A
CYS
112
C
SG
CYS
12
1_555
109.8
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
125
C
NE2
HIS
25
1_555
98.6
A
CYS
112
C
SG
CYS
12
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
125
C
NE2
HIS
25
1_555
121.2
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
129
C
NE2
HIS
29
1_555
104.1
A
CYS
112
C
SG
CYS
12
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
129
C
NE2
HIS
29
1_555
119.4
A
HIS
125
C
NE2
HIS
25
1_555
A
ZN
201
D
ZN
ZN
1_555
A
HIS
129
C
NE2
HIS
29
1_555
100.6
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
A
CYS
140
C
SG
CYS
40
1_555
118.5
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
153
C
NE2
HIS
53
1_555
107.3
A
CYS
140
C
SG
CYS
40
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
153
C
NE2
HIS
53
1_555
107.8
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
157
C
NE2
HIS
57
1_555
111.1
A
CYS
140
C
SG
CYS
40
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
157
C
NE2
HIS
57
1_555
112.5
A
HIS
153
C
NE2
HIS
53
1_555
A
ZN
202
E
ZN
ZN
1_555
A
HIS
157
C
NE2
HIS
57
1_555
97.4
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
A
CYS
168
C
SG
CYS
68
1_555
119.9
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
181
C
NE2
HIS
81
1_555
110.4
A
CYS
168
C
SG
CYS
68
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
181
C
NE2
HIS
81
1_555
96.3
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
185
C
NE2
HIS
85
1_555
107.5
A
CYS
168
C
SG
CYS
68
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
185
C
NE2
HIS
85
1_555
116.8
A
HIS
181
C
NE2
HIS
81
1_555
A
ZN
203
F
ZN
ZN
1_555
A
HIS
185
C
NE2
HIS
85
1_555
104.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
105
C
O
TYR
5
A
N
PHE
116
C
N
PHE
16
A
O
PHE
135
C
O
PHE
35
A
N
PHE
144
C
N
PHE
44
A
N
PHE
163
C
N
PHE
63
A
O
PHE
172
C
O
PHE
72
1
A
MET
101
C
MET
1
1
Y
1
A
GLU
102
C
GLU
2
1
Y
1
A
GLN
188
C
GLN
88
1
Y
1
A
LYS
189
C
LYS
89
1
Y
1
A
ASP
190
C
ASP
90
1
Y
1
B
DC
3
0.060
SIDE CHAIN
1
-5.81
0.80
102.40
96.59
C
C
C
C3'
C2'
C1'
DG
DG
DG
52
52
52
N
PARHCSDX.PRO
TOPHCSDX.PRO
PARNDBX.DNA
TOPNDBX.DNA
31.90
0.7290
0.0000
0.0000
9.6540
0.0000
4.5260
0.2590000
0.008
0.2100000
0.2100000
1.900
20.000
1079
9890
10.900
78.500
BASED
100000.000
0.0000
1
RESTRAINED INDIVIDUAL
THROUGHOUT
0.000
ISOMORPHOUS MOLECULAR REPLACEMENT
PDB ENTRY 1AAY, WITHOUT WATERS AND WITHOUT SIDE CHAINS FOR RESIDUES 18 - 24
1.900
20.000
121
1277
3
445
708
0.006
1.14
19.8
1.40
0.820
1.500
1.449
2.000
1.395
2.000
2.385
2.500
0.3230000
0.03
0.3300000
1.99
119
773
8
13.30
58.20
1.900
20.000
1A1K
23142
-2.000
0.0340000
1
24.7000
2.300
79.900
1.900
1.970
3.100
0.2580000
1.900
63.80
model building
X-PLOR
refinement
X-PLOR
3.8
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
SER
119
C
SER
19
HELX_P
A
THR
130
C
THR
30
1
1
12
A
SER
147
C
SER
47
HELX_P
A
THR
158
C
THR
58
1
2
12
A
SER
175
C
SER
75
HELX_P
A
HIS
185
C
HIS
85
1
3
11
metalc
2.304
A
CYS
107
C
SG
CYS
7
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.307
A
CYS
112
C
SG
CYS
12
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.100
A
HIS
125
C
NE2
HIS
25
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
1.896
A
HIS
129
C
NE2
HIS
29
1_555
A
ZN
201
D
ZN
ZN
1_555
metalc
2.058
A
CYS
137
C
SG
CYS
37
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.189
A
CYS
140
C
SG
CYS
40
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.021
A
HIS
153
C
NE2
HIS
53
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.108
A
HIS
157
C
NE2
HIS
57
1_555
A
ZN
202
E
ZN
ZN
1_555
metalc
2.164
A
CYS
165
C
SG
CYS
65
1_555
A
ZN
203
F
ZN
ZN
1_555
metalc
2.281
A
CYS
168
C
SG
CYS
68
1_555
A
ZN
203
F
ZN
ZN
1_555
metalc
2.171
A
HIS
181
C
NE2
HIS
81
1_555
A
ZN
203
F
ZN
ZN
1_555
metalc
1.913
A
HIS
185
C
NE2
HIS
85
1_555
A
ZN
203
F
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DG
2
A
N1
DG
2
1_555
C
DC
61
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
A
N2
DG
2
1_555
C
DC
61
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
B
DG
2
A
O6
DG
2
1_555
C
DC
61
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N3
DC
3
1_555
C
DG
60
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
A
N4
DC
3
1_555
C
DG
60
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
3
A
O2
DC
3
1_555
C
DG
60
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
B
DG
4
A
N1
DG
4
1_555
C
DC
59
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
4
A
N2
DG
4
1_555
C
DC
59
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
4
A
O6
DG
4
1_555
C
DC
59
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DT
5
A
N3
DT
5
1_555
C
DA
58
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
B
DT
5
A
O4
DT
5
1_555
C
DA
58
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N1
DG
6
1_555
C
DC
57
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
6
A
N2
DG
6
1_555
C
DC
57
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
6
A
O6
DG
6
1_555
C
DC
57
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N1
DG
7
1_555
C
DC
56
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
A
N2
DG
7
1_555
C
DC
56
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
A
O6
DG
7
1_555
C
DC
56
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
8
A
N1
DG
8
1_555
C
DC
55
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
8
A
N2
DG
8
1_555
C
DC
55
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
B
DG
8
A
O6
DG
8
1_555
C
DC
55
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
B
DA
9
A
N1
DA
9
1_555
C
DT
54
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
B
DA
9
A
N6
DA
9
1_555
C
DT
54
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
B
DC
10
A
N3
DC
10
1_555
C
DG
53
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
10
A
N4
DC
10
1_555
C
DG
53
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
10
A
O2
DC
10
1_555
C
DG
53
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
11
A
N3
DC
11
1_555
C
DG
52
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
11
A
N4
DC
11
1_555
C
DG
52
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
11
A
O2
DC
11
1_555
C
DG
52
B
N2
DG
2
1_555
TRANSCRIPTION/DNA
COMPLEX (ZINC FINGER-DNA), ZINC FINGER, DNA-BINDING PROTEIN, TRANSCRIPTION-DNA COMPLEX
EGR1_MOUSE
UNP
3
P08046
1A1K
PDB
1
1A1K
1A1K
PDB
2
1A1K
308
396
1A1K
102
190
P08046
A
1
2
90
1
11
1A1K
1
11
1A1K
B
2
1
11
51
61
1A1K
51
61
1A1K
C
3
1
11
1
ASP
variant
ALA
120
1A1K
A
P08046
UNP
326
20
1
GLU
variant
ASP
121
1A1K
A
P08046
UNP
327
21
2
2
2
anti-parallel
anti-parallel
anti-parallel
A
TYR
105
C
TYR
5
A
ALA
106
C
ALA
6
A
ARG
115
C
ARG
15
A
PHE
116
C
PHE
16
A
PHE
135
C
PHE
35
A
GLN
136
C
GLN
36
A
ASN
143
C
ASN
43
A
PHE
144
C
PHE
44
A
PHE
163
C
PHE
63
A
ALA
164
C
ALA
64
A
LYS
171
C
LYS
71
A
PHE
172
C
PHE
72
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
4
BINDING SITE FOR RESIDUE ZN A 202
A
ZN
202
Software
4
BINDING SITE FOR RESIDUE ZN A 203
A
ZN
203
Software
4
A
CYS
107
C
CYS
7
4
1_555
A
CYS
112
C
CYS
12
4
1_555
A
HIS
125
C
HIS
25
4
1_555
A
HIS
129
C
HIS
29
4
1_555
A
CYS
137
C
CYS
37
4
1_555
A
CYS
140
C
CYS
40
4
1_555
A
HIS
153
C
HIS
53
4
1_555
A
HIS
157
C
HIS
57
4
1_555
A
CYS
165
C
CYS
65
4
1_555
A
CYS
168
C
CYS
68
4
1_555
A
HIS
181
C
HIS
81
4
1_555
A
HIS
185
C
HIS
85
4
1_555
20
C 2 2 21